The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay
SPO11 is a key protein for promoting meiotic recombination, by generating chromatin locus- and timing-specific DNA double-strand breaks (DSBs). The DSB activity of SPO11 was shown by genetic analyses, but whether SPO11 exerts DSB-forming activity by itself is still an unanswered question. DSB format...
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creator | Shingu, Yoshinori Tokai, Takeshi Agawa, Yasuo Toyota, Kentaro Ahamed, Selina Kawagishi-Kobayashi, Makiko Komatsu, Akira Mikawa, Tsutomu Yamamoto, Masa-Toshi Wakasa, Kyo Shibata, Takehiko Kusano, Kohji |
description | SPO11 is a key protein for promoting meiotic recombination, by generating chromatin locus- and timing-specific DNA double-strand breaks (DSBs). The DSB activity of SPO11 was shown by genetic analyses, but whether SPO11 exerts DSB-forming activity by itself is still an unanswered question. DSB formation by SPO11 has not been detected by biochemical means, probably because of a lack of proper protein-folding, posttranslational modifications, and/or specific SPO11-interacting proteins required for this activity. In addition, plants have multiple SPO11-homologues.
To determine whether SPO11 can cleave DNA by itself, and to identify which plant SPO11 homologue cleaves DNA, we developed a Drosophila bioassay system that detects the DSB signals generated by a plant SPO11 homologue expressed ectopically. We cytologically and genetically demonstrated the DSB activities of Arabidopsis AtSPO11-1 and AtSPO11-2, which are required for meiosis, in the absence of other plant proteins. Using this bioassay, we further found that a novel SPO11-homologue, OsSPO11D, which has no counterpart in Arabidopsis, displays prominent DSB-forming activity. Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
The Drosophila bioassay system successfully demonstrated that some plant SPO11 orthologues have intrinsic DSB activities. Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function. |
doi_str_mv | 10.1186/1471-2199-13-1 |
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To determine whether SPO11 can cleave DNA by itself, and to identify which plant SPO11 homologue cleaves DNA, we developed a Drosophila bioassay system that detects the DSB signals generated by a plant SPO11 homologue expressed ectopically. We cytologically and genetically demonstrated the DSB activities of Arabidopsis AtSPO11-1 and AtSPO11-2, which are required for meiosis, in the absence of other plant proteins. Using this bioassay, we further found that a novel SPO11-homologue, OsSPO11D, which has no counterpart in Arabidopsis, displays prominent DSB-forming activity. Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
The Drosophila bioassay system successfully demonstrated that some plant SPO11 orthologues have intrinsic DSB activities. Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.</description><identifier>ISSN: 1471-2199</identifier><identifier>EISSN: 1471-2199</identifier><identifier>DOI: 10.1186/1471-2199-13-1</identifier><identifier>PMID: 22248237</identifier><language>eng</language><publisher>England: BioMed Central Ltd</publisher><subject>Amino Acid Sequence ; Animals ; Anthers ; Arabidopsis ; Arabidopsis - metabolism ; Arabidopsis Proteins - genetics ; Arabidopsis Proteins - metabolism ; Biological Assay ; Chromatin ; Chromosomes ; Deoxyribonucleic acid ; DNA ; DNA Breaks, Double-Stranded ; DNA damage ; DNA Topoisomerases - genetics ; DNA Topoisomerases - metabolism ; Drosophila ; Drosophila - growth & development ; Endodeoxyribonucleases - genetics ; Endodeoxyribonucleases - metabolism ; Genes ; Genetic analysis ; Genetic recombination ; Meiosis ; Molecular Sequence Data ; Oocytes - metabolism ; Oryza - metabolism ; Oryza sativa ; Physiological aspects ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Pollen ; Proteins ; Recombination ; RNA, Messenger - metabolism ; Transgenes ; Yeast</subject><ispartof>BMC molecular biology, 2012-01, Vol.13 (1), p.1-1, Article 1</ispartof><rights>COPYRIGHT 2012 BioMed Central Ltd.</rights><rights>2012 Shingu et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</rights><rights>Copyright ©2012 Shingu et al; licensee BioMed Central Ltd. 2012 Shingu et al; licensee BioMed Central Ltd.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b674t-9d32058003345bfcec8e28b5cf658c5d145a042d4c7c68994eb5284e258df07d3</citedby><cites>FETCH-LOGICAL-b674t-9d32058003345bfcec8e28b5cf658c5d145a042d4c7c68994eb5284e258df07d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273433/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273433/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,24800,27923,27924,53790,53792,75509,75510</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22248237$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shingu, Yoshinori</creatorcontrib><creatorcontrib>Tokai, Takeshi</creatorcontrib><creatorcontrib>Agawa, Yasuo</creatorcontrib><creatorcontrib>Toyota, Kentaro</creatorcontrib><creatorcontrib>Ahamed, Selina</creatorcontrib><creatorcontrib>Kawagishi-Kobayashi, Makiko</creatorcontrib><creatorcontrib>Komatsu, Akira</creatorcontrib><creatorcontrib>Mikawa, Tsutomu</creatorcontrib><creatorcontrib>Yamamoto, Masa-Toshi</creatorcontrib><creatorcontrib>Wakasa, Kyo</creatorcontrib><creatorcontrib>Shibata, Takehiko</creatorcontrib><creatorcontrib>Kusano, Kohji</creatorcontrib><title>The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay</title><title>BMC molecular biology</title><addtitle>BMC Mol Biol</addtitle><description>SPO11 is a key protein for promoting meiotic recombination, by generating chromatin locus- and timing-specific DNA double-strand breaks (DSBs). The DSB activity of SPO11 was shown by genetic analyses, but whether SPO11 exerts DSB-forming activity by itself is still an unanswered question. DSB formation by SPO11 has not been detected by biochemical means, probably because of a lack of proper protein-folding, posttranslational modifications, and/or specific SPO11-interacting proteins required for this activity. In addition, plants have multiple SPO11-homologues.
To determine whether SPO11 can cleave DNA by itself, and to identify which plant SPO11 homologue cleaves DNA, we developed a Drosophila bioassay system that detects the DSB signals generated by a plant SPO11 homologue expressed ectopically. We cytologically and genetically demonstrated the DSB activities of Arabidopsis AtSPO11-1 and AtSPO11-2, which are required for meiosis, in the absence of other plant proteins. Using this bioassay, we further found that a novel SPO11-homologue, OsSPO11D, which has no counterpart in Arabidopsis, displays prominent DSB-forming activity. Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
The Drosophila bioassay system successfully demonstrated that some plant SPO11 orthologues have intrinsic DSB activities. Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Anthers</subject><subject>Arabidopsis</subject><subject>Arabidopsis - metabolism</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Arabidopsis Proteins - metabolism</subject><subject>Biological Assay</subject><subject>Chromatin</subject><subject>Chromosomes</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Breaks, Double-Stranded</subject><subject>DNA damage</subject><subject>DNA Topoisomerases - genetics</subject><subject>DNA Topoisomerases - metabolism</subject><subject>Drosophila</subject><subject>Drosophila - growth & development</subject><subject>Endodeoxyribonucleases - genetics</subject><subject>Endodeoxyribonucleases - metabolism</subject><subject>Genes</subject><subject>Genetic analysis</subject><subject>Genetic recombination</subject><subject>Meiosis</subject><subject>Molecular Sequence Data</subject><subject>Oocytes - metabolism</subject><subject>Oryza - metabolism</subject><subject>Oryza sativa</subject><subject>Physiological aspects</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Pollen</subject><subject>Proteins</subject><subject>Recombination</subject><subject>RNA, Messenger - metabolism</subject><subject>Transgenes</subject><subject>Yeast</subject><issn>1471-2199</issn><issn>1471-2199</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kk1v1DAQhiMEomXhyhFZcAAOKf5M7AvSqnxVqlREy9ly7MmuSxJv7WTF_nu82rLqQkG2ZGvm8evx6ymK5wSfECKrd4TXpKREqZKwkjwojveBh3f2R8WTlK4xJrVk8nFxRCnlkrL6uEhXS0AuTE0HZRqjGRw41EQwP8o2xN4PC2Ts6Nd-3KDQolVnhhFdfr0gJKEMI4OGsIYORW9hF0cR1mC6rcwmpz_EkMJq6TuDGh9MSmbztHjUmi7Bs9t1Vnz_9PHq9Et5fvH57HR-XjZVzcdSOUaxkBgzxkXTWrASqGyEbSshrXCEC4M5ddzWtpJKcWgElRyokK7FtWOz4v1OdzU1PTgLQ35gp1fR9yZudDBeH2YGv9SLsNaM1owzlgXmO4Fc-T8EDjM29Hprut6argnLc1a8vi0ihpsJ0qh7nyx02UgIU9KKYlYJIWUm3_yXJJhKTHklRUZf_oFehykO2Uyt8s2KCUwz9GoHLfJvaD-0Iddot5p6TmtFhMKsztTJPVQeDnpvwwCtz_GDA28PDmRmhJ_jwkwp6bPLb_eK29wFKUK7945gve3fv916cffL9vjvhmW_AIsH6EQ</recordid><startdate>20120116</startdate><enddate>20120116</enddate><creator>Shingu, Yoshinori</creator><creator>Tokai, Takeshi</creator><creator>Agawa, Yasuo</creator><creator>Toyota, Kentaro</creator><creator>Ahamed, Selina</creator><creator>Kawagishi-Kobayashi, Makiko</creator><creator>Komatsu, Akira</creator><creator>Mikawa, Tsutomu</creator><creator>Yamamoto, Masa-Toshi</creator><creator>Wakasa, Kyo</creator><creator>Shibata, Takehiko</creator><creator>Kusano, Kohji</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20120116</creationdate><title>The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay</title><author>Shingu, Yoshinori ; Tokai, Takeshi ; Agawa, Yasuo ; Toyota, Kentaro ; Ahamed, Selina ; Kawagishi-Kobayashi, Makiko ; Komatsu, Akira ; Mikawa, Tsutomu ; Yamamoto, Masa-Toshi ; Wakasa, Kyo ; Shibata, Takehiko ; Kusano, Kohji</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b674t-9d32058003345bfcec8e28b5cf658c5d145a042d4c7c68994eb5284e258df07d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Anthers</topic><topic>Arabidopsis</topic><topic>Arabidopsis - metabolism</topic><topic>Arabidopsis Proteins - genetics</topic><topic>Arabidopsis Proteins - metabolism</topic><topic>Biological Assay</topic><topic>Chromatin</topic><topic>Chromosomes</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA Breaks, Double-Stranded</topic><topic>DNA damage</topic><topic>DNA Topoisomerases - genetics</topic><topic>DNA Topoisomerases - metabolism</topic><topic>Drosophila</topic><topic>Drosophila - growth & development</topic><topic>Endodeoxyribonucleases - genetics</topic><topic>Endodeoxyribonucleases - metabolism</topic><topic>Genes</topic><topic>Genetic analysis</topic><topic>Genetic recombination</topic><topic>Meiosis</topic><topic>Molecular Sequence Data</topic><topic>Oocytes - metabolism</topic><topic>Oryza - metabolism</topic><topic>Oryza sativa</topic><topic>Physiological aspects</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Pollen</topic><topic>Proteins</topic><topic>Recombination</topic><topic>RNA, Messenger - metabolism</topic><topic>Transgenes</topic><topic>Yeast</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shingu, Yoshinori</creatorcontrib><creatorcontrib>Tokai, Takeshi</creatorcontrib><creatorcontrib>Agawa, Yasuo</creatorcontrib><creatorcontrib>Toyota, Kentaro</creatorcontrib><creatorcontrib>Ahamed, Selina</creatorcontrib><creatorcontrib>Kawagishi-Kobayashi, Makiko</creatorcontrib><creatorcontrib>Komatsu, Akira</creatorcontrib><creatorcontrib>Mikawa, Tsutomu</creatorcontrib><creatorcontrib>Yamamoto, Masa-Toshi</creatorcontrib><creatorcontrib>Wakasa, Kyo</creatorcontrib><creatorcontrib>Shibata, Takehiko</creatorcontrib><creatorcontrib>Kusano, Kohji</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection (ProQuest)</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>BMC molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shingu, Yoshinori</au><au>Tokai, Takeshi</au><au>Agawa, Yasuo</au><au>Toyota, Kentaro</au><au>Ahamed, Selina</au><au>Kawagishi-Kobayashi, Makiko</au><au>Komatsu, Akira</au><au>Mikawa, Tsutomu</au><au>Yamamoto, Masa-Toshi</au><au>Wakasa, Kyo</au><au>Shibata, Takehiko</au><au>Kusano, Kohji</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay</atitle><jtitle>BMC molecular biology</jtitle><addtitle>BMC Mol Biol</addtitle><date>2012-01-16</date><risdate>2012</risdate><volume>13</volume><issue>1</issue><spage>1</spage><epage>1</epage><pages>1-1</pages><artnum>1</artnum><issn>1471-2199</issn><eissn>1471-2199</eissn><abstract>SPO11 is a key protein for promoting meiotic recombination, by generating chromatin locus- and timing-specific DNA double-strand breaks (DSBs). The DSB activity of SPO11 was shown by genetic analyses, but whether SPO11 exerts DSB-forming activity by itself is still an unanswered question. DSB formation by SPO11 has not been detected by biochemical means, probably because of a lack of proper protein-folding, posttranslational modifications, and/or specific SPO11-interacting proteins required for this activity. In addition, plants have multiple SPO11-homologues.
To determine whether SPO11 can cleave DNA by itself, and to identify which plant SPO11 homologue cleaves DNA, we developed a Drosophila bioassay system that detects the DSB signals generated by a plant SPO11 homologue expressed ectopically. We cytologically and genetically demonstrated the DSB activities of Arabidopsis AtSPO11-1 and AtSPO11-2, which are required for meiosis, in the absence of other plant proteins. Using this bioassay, we further found that a novel SPO11-homologue, OsSPO11D, which has no counterpart in Arabidopsis, displays prominent DSB-forming activity. Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
The Drosophila bioassay system successfully demonstrated that some plant SPO11 orthologues have intrinsic DSB activities. Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>22248237</pmid><doi>10.1186/1471-2199-13-1</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Animals Anthers Arabidopsis Arabidopsis - metabolism Arabidopsis Proteins - genetics Arabidopsis Proteins - metabolism Biological Assay Chromatin Chromosomes Deoxyribonucleic acid DNA DNA Breaks, Double-Stranded DNA damage DNA Topoisomerases - genetics DNA Topoisomerases - metabolism Drosophila Drosophila - growth & development Endodeoxyribonucleases - genetics Endodeoxyribonucleases - metabolism Genes Genetic analysis Genetic recombination Meiosis Molecular Sequence Data Oocytes - metabolism Oryza - metabolism Oryza sativa Physiological aspects Plant Proteins - genetics Plant Proteins - metabolism Pollen Proteins Recombination RNA, Messenger - metabolism Transgenes Yeast |
title | The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay |
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