Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)
Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting...
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creator | Piacente, Francesco Marin, Margherita Molinaro, Antonio De Castro, Cristina Seltzer, Virginie Salis, Annalisa Damonte, Gianluca Bernardi, Cinzia Claverie, Jean-Michel Abergel, Chantal Tonetti, Michela |
description | Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed.
Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure.
Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers.
Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery.
Significance: These results contribute to shed light on the origin of viral glycosylation systems. |
doi_str_mv | 10.1074/jbc.M111.314559 |
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Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure.
Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers.
Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery.
Significance: These results contribute to shed light on the origin of viral glycosylation systems.</description><identifier>ISSN: 0021-9258</identifier><identifier>EISSN: 1083-351X</identifier><identifier>DOI: 10.1074/jbc.M111.314559</identifier><identifier>PMID: 22157758</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>4-Amino-4,6-dideoxyglucose ; Acanthamoeba - virology ; Aminotransferase ; Carbohydrate Biosynthesis ; DNA Viruses ; DNA, Viral - genetics ; DNA, Viral - metabolism ; Evolution, Molecular ; GC-MS ; Genes, Viral - physiology ; Glucosamine - analogs & derivatives ; Glucosamine - genetics ; Glucosamine - metabolism ; Glycobiology and Extracellular Matrices ; Glycosylation ; Mimiviridae - enzymology ; Mimiviridae - genetics ; Mimivirus ; NCLDV ; NMR ; Transaminases - genetics ; Transaminases - metabolism ; Uridine Diphosphate Sugars - genetics ; Uridine Diphosphate Sugars - metabolism ; Viosamine</subject><ispartof>The Journal of biological chemistry, 2012-01, Vol.287 (5), p.3009-3018</ispartof><rights>2012 © 2012 ASBMB. Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.</rights><rights>2012 by The American Society for Biochemistry and Molecular Biology, Inc. 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</citedby><cites>FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270958/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270958/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22157758$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Piacente, Francesco</creatorcontrib><creatorcontrib>Marin, Margherita</creatorcontrib><creatorcontrib>Molinaro, Antonio</creatorcontrib><creatorcontrib>De Castro, Cristina</creatorcontrib><creatorcontrib>Seltzer, Virginie</creatorcontrib><creatorcontrib>Salis, Annalisa</creatorcontrib><creatorcontrib>Damonte, Gianluca</creatorcontrib><creatorcontrib>Bernardi, Cinzia</creatorcontrib><creatorcontrib>Claverie, Jean-Michel</creatorcontrib><creatorcontrib>Abergel, Chantal</creatorcontrib><creatorcontrib>Tonetti, Michela</creatorcontrib><title>Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)</title><title>The Journal of biological chemistry</title><addtitle>J Biol Chem</addtitle><description>Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed.
Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure.
Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers.
Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery.
Significance: These results contribute to shed light on the origin of viral glycosylation systems.</description><subject>4-Amino-4,6-dideoxyglucose</subject><subject>Acanthamoeba - virology</subject><subject>Aminotransferase</subject><subject>Carbohydrate Biosynthesis</subject><subject>DNA Viruses</subject><subject>DNA, Viral - genetics</subject><subject>DNA, Viral - metabolism</subject><subject>Evolution, Molecular</subject><subject>GC-MS</subject><subject>Genes, Viral - physiology</subject><subject>Glucosamine - analogs & derivatives</subject><subject>Glucosamine - genetics</subject><subject>Glucosamine - metabolism</subject><subject>Glycobiology and Extracellular Matrices</subject><subject>Glycosylation</subject><subject>Mimiviridae - enzymology</subject><subject>Mimiviridae - genetics</subject><subject>Mimivirus</subject><subject>NCLDV</subject><subject>NMR</subject><subject>Transaminases - genetics</subject><subject>Transaminases - metabolism</subject><subject>Uridine Diphosphate Sugars - genetics</subject><subject>Uridine Diphosphate Sugars - metabolism</subject><subject>Viosamine</subject><issn>0021-9258</issn><issn>1083-351X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp1kUFv1DAQRi0EokvhzA35Bkh460nixL4gLaUUpBaQoBU3y7Enu66SuNjJwv57XLZUcMCXsTRvPlvzCHkKfAm8qY6uWrs8B4BlCZUQ6h5ZAJclKwV8u08WnBfAVCHkAXmU0hXPp1LwkBwUBYimEXJB5lNvxom-_biilz7OiZ77wW9_305GGxwm-tlMmx9mR7sQ6Rsf0m6cNph8oqGjF-OcZtPTL_PaRFqx1eDHwKpXNXPeYfi5Y46t-9mGhPTFZR42GcCXj8mDzvQJn9zWQ3Lx7uTr8Xt29un0w_HqjFnB5cSEtYjSWSOwlbZqKoUACqXsig7q1tYgoVbKoeOuRonGlk4qdG1RdR20VXlIXu9zr-d2QGdxnKLp9XX0g4k7HYzX_3ZGv9HrsNVl0XAlZA54fhsQw_cZ06QHnyz2vRkxzEkrkKrMyywzebQnbQwpRezuXgGub1zp7ErfuNJ7V3ni2d-fu-P_yMmA2gOYV7T1GHWyHkeLzke0k3bB_zf8F27Wpb8</recordid><startdate>20120127</startdate><enddate>20120127</enddate><creator>Piacente, Francesco</creator><creator>Marin, Margherita</creator><creator>Molinaro, Antonio</creator><creator>De Castro, Cristina</creator><creator>Seltzer, Virginie</creator><creator>Salis, Annalisa</creator><creator>Damonte, Gianluca</creator><creator>Bernardi, Cinzia</creator><creator>Claverie, Jean-Michel</creator><creator>Abergel, Chantal</creator><creator>Tonetti, Michela</creator><general>Elsevier Inc</general><general>American Society for Biochemistry and Molecular Biology</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20120127</creationdate><title>Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)</title><author>Piacente, Francesco ; Marin, Margherita ; Molinaro, Antonio ; De Castro, Cristina ; Seltzer, Virginie ; Salis, Annalisa ; Damonte, Gianluca ; Bernardi, Cinzia ; Claverie, Jean-Michel ; Abergel, Chantal ; Tonetti, Michela</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>4-Amino-4,6-dideoxyglucose</topic><topic>Acanthamoeba - virology</topic><topic>Aminotransferase</topic><topic>Carbohydrate Biosynthesis</topic><topic>DNA Viruses</topic><topic>DNA, Viral - genetics</topic><topic>DNA, Viral - metabolism</topic><topic>Evolution, Molecular</topic><topic>GC-MS</topic><topic>Genes, Viral - physiology</topic><topic>Glucosamine - analogs & derivatives</topic><topic>Glucosamine - genetics</topic><topic>Glucosamine - metabolism</topic><topic>Glycobiology and Extracellular Matrices</topic><topic>Glycosylation</topic><topic>Mimiviridae - enzymology</topic><topic>Mimiviridae - genetics</topic><topic>Mimivirus</topic><topic>NCLDV</topic><topic>NMR</topic><topic>Transaminases - genetics</topic><topic>Transaminases - metabolism</topic><topic>Uridine Diphosphate Sugars - genetics</topic><topic>Uridine Diphosphate Sugars - metabolism</topic><topic>Viosamine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Piacente, Francesco</creatorcontrib><creatorcontrib>Marin, Margherita</creatorcontrib><creatorcontrib>Molinaro, Antonio</creatorcontrib><creatorcontrib>De Castro, Cristina</creatorcontrib><creatorcontrib>Seltzer, Virginie</creatorcontrib><creatorcontrib>Salis, Annalisa</creatorcontrib><creatorcontrib>Damonte, Gianluca</creatorcontrib><creatorcontrib>Bernardi, Cinzia</creatorcontrib><creatorcontrib>Claverie, Jean-Michel</creatorcontrib><creatorcontrib>Abergel, Chantal</creatorcontrib><creatorcontrib>Tonetti, Michela</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The Journal of biological chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Piacente, Francesco</au><au>Marin, Margherita</au><au>Molinaro, Antonio</au><au>De Castro, Cristina</au><au>Seltzer, Virginie</au><au>Salis, Annalisa</au><au>Damonte, Gianluca</au><au>Bernardi, Cinzia</au><au>Claverie, Jean-Michel</au><au>Abergel, Chantal</au><au>Tonetti, Michela</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)</atitle><jtitle>The Journal of biological chemistry</jtitle><addtitle>J Biol Chem</addtitle><date>2012-01-27</date><risdate>2012</risdate><volume>287</volume><issue>5</issue><spage>3009</spage><epage>3018</epage><pages>3009-3018</pages><issn>0021-9258</issn><eissn>1083-351X</eissn><abstract>Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed.
Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure.
Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers.
Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery.
Significance: These results contribute to shed light on the origin of viral glycosylation systems.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>22157758</pmid><doi>10.1074/jbc.M111.314559</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 4-Amino-4,6-dideoxyglucose Acanthamoeba - virology Aminotransferase Carbohydrate Biosynthesis DNA Viruses DNA, Viral - genetics DNA, Viral - metabolism Evolution, Molecular GC-MS Genes, Viral - physiology Glucosamine - analogs & derivatives Glucosamine - genetics Glucosamine - metabolism Glycobiology and Extracellular Matrices Glycosylation Mimiviridae - enzymology Mimiviridae - genetics Mimivirus NCLDV NMR Transaminases - genetics Transaminases - metabolism Uridine Diphosphate Sugars - genetics Uridine Diphosphate Sugars - metabolism Viosamine |
title | Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine) |
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