Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)

Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting...

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Veröffentlicht in:The Journal of biological chemistry 2012-01, Vol.287 (5), p.3009-3018
Hauptverfasser: Piacente, Francesco, Marin, Margherita, Molinaro, Antonio, De Castro, Cristina, Seltzer, Virginie, Salis, Annalisa, Damonte, Gianluca, Bernardi, Cinzia, Claverie, Jean-Michel, Abergel, Chantal, Tonetti, Michela
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container_issue 5
container_start_page 3009
container_title The Journal of biological chemistry
container_volume 287
creator Piacente, Francesco
Marin, Margherita
Molinaro, Antonio
De Castro, Cristina
Seltzer, Virginie
Salis, Annalisa
Damonte, Gianluca
Bernardi, Cinzia
Claverie, Jean-Michel
Abergel, Chantal
Tonetti, Michela
description Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed. Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure. Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers. Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery. Significance: These results contribute to shed light on the origin of viral glycosylation systems.
doi_str_mv 10.1074/jbc.M111.314559
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Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed. Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure. Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers. Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery. 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Currently published by Elsevier Inc; originally published by American Society for Biochemistry and Molecular Biology.</rights><rights>2012 by The American Society for Biochemistry and Molecular Biology, Inc. 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</citedby><cites>FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270958/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3270958/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22157758$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Piacente, Francesco</creatorcontrib><creatorcontrib>Marin, Margherita</creatorcontrib><creatorcontrib>Molinaro, Antonio</creatorcontrib><creatorcontrib>De Castro, Cristina</creatorcontrib><creatorcontrib>Seltzer, Virginie</creatorcontrib><creatorcontrib>Salis, Annalisa</creatorcontrib><creatorcontrib>Damonte, Gianluca</creatorcontrib><creatorcontrib>Bernardi, Cinzia</creatorcontrib><creatorcontrib>Claverie, Jean-Michel</creatorcontrib><creatorcontrib>Abergel, Chantal</creatorcontrib><creatorcontrib>Tonetti, Michela</creatorcontrib><title>Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)</title><title>The Journal of biological chemistry</title><addtitle>J Biol Chem</addtitle><description>Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. 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Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed. Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure. Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers. Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery. 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Marin, Margherita ; Molinaro, Antonio ; De Castro, Cristina ; Seltzer, Virginie ; Salis, Annalisa ; Damonte, Gianluca ; Bernardi, Cinzia ; Claverie, Jean-Michel ; Abergel, Chantal ; Tonetti, Michela</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c508t-5ccee8dca5eb8c4749e119e88f2f16bc6181699ded0d6e8eac3d89edb24ff1b43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>4-Amino-4,6-dideoxyglucose</topic><topic>Acanthamoeba - virology</topic><topic>Aminotransferase</topic><topic>Carbohydrate Biosynthesis</topic><topic>DNA Viruses</topic><topic>DNA, Viral - genetics</topic><topic>DNA, Viral - metabolism</topic><topic>Evolution, Molecular</topic><topic>GC-MS</topic><topic>Genes, Viral - physiology</topic><topic>Glucosamine - analogs &amp; derivatives</topic><topic>Glucosamine - genetics</topic><topic>Glucosamine - metabolism</topic><topic>Glycobiology and Extracellular Matrices</topic><topic>Glycosylation</topic><topic>Mimiviridae - enzymology</topic><topic>Mimiviridae - genetics</topic><topic>Mimivirus</topic><topic>NCLDV</topic><topic>NMR</topic><topic>Transaminases - genetics</topic><topic>Transaminases - metabolism</topic><topic>Uridine Diphosphate Sugars - genetics</topic><topic>Uridine Diphosphate Sugars - metabolism</topic><topic>Viosamine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Piacente, Francesco</creatorcontrib><creatorcontrib>Marin, Margherita</creatorcontrib><creatorcontrib>Molinaro, Antonio</creatorcontrib><creatorcontrib>De Castro, Cristina</creatorcontrib><creatorcontrib>Seltzer, Virginie</creatorcontrib><creatorcontrib>Salis, Annalisa</creatorcontrib><creatorcontrib>Damonte, Gianluca</creatorcontrib><creatorcontrib>Bernardi, Cinzia</creatorcontrib><creatorcontrib>Claverie, Jean-Michel</creatorcontrib><creatorcontrib>Abergel, Chantal</creatorcontrib><creatorcontrib>Tonetti, Michela</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The Journal of biological chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Piacente, Francesco</au><au>Marin, Margherita</au><au>Molinaro, Antonio</au><au>De Castro, Cristina</au><au>Seltzer, Virginie</au><au>Salis, Annalisa</au><au>Damonte, Gianluca</au><au>Bernardi, Cinzia</au><au>Claverie, Jean-Michel</au><au>Abergel, Chantal</au><au>Tonetti, Michela</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)</atitle><jtitle>The Journal of biological chemistry</jtitle><addtitle>J Biol Chem</addtitle><date>2012-01-27</date><risdate>2012</risdate><volume>287</volume><issue>5</issue><spage>3009</spage><epage>3018</epage><pages>3009-3018</pages><issn>0021-9258</issn><eissn>1083-351X</eissn><abstract>Mimivirus is one the largest DNA virus identified so far, infecting several Acanthamoeba species. Analysis of its genome revealed the presence of a nine-gene cluster containing genes potentially involved in glycan formation. All of these genes are co-expressed at late stages of infection, suggesting their role in the formation of the long fibers covering the viral surface. Among them, we identified the L136 gene as a pyridoxal phosphate-dependent sugar aminotransferase. This enzyme was shown to catalyze the formation of UDP-4-amino-4,6-dideoxy-d-glucose (UDP-viosamine) from UDP-4-keto-6-deoxy-d-glucose, a key compound involved also in the biosynthesis of l-rhamnose. This finding further supports the hypothesis that Mimivirus encodes a glycosylation system that is completely independent of the amoebal host. Viosamine, together with rhamnose, (N-acetyl)glucosamine, and glucose, was found as a major component of the viral glycans. Most of the sugars were associated with the fibers, confirming a capsular-like nature of the viral surface. Phylogenetic analysis clearly indicated that L136 was not a recent acquisition from bacteria through horizontal gene transfer, but it was acquired very early during evolution. Implications for the origin of the glycosylation machinery in giant DNA virus are also discussed. Background: Mimivirus is highly glycosylated; however, nothing is known about its glycan composition and structure. Results: We identified a Mimivirus UDP-viosamine synthetic pathway, and we determined the sugar composition of viral fibers. Conclusion: Our data give further support to the presence of a Mimivirus-encoded glycosylation machinery. Significance: These results contribute to shed light on the origin of viral glycosylation systems.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>22157758</pmid><doi>10.1074/jbc.M111.314559</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record>
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subjects 4-Amino-4,6-dideoxyglucose
Acanthamoeba - virology
Aminotransferase
Carbohydrate Biosynthesis
DNA Viruses
DNA, Viral - genetics
DNA, Viral - metabolism
Evolution, Molecular
GC-MS
Genes, Viral - physiology
Glucosamine - analogs & derivatives
Glucosamine - genetics
Glucosamine - metabolism
Glycobiology and Extracellular Matrices
Glycosylation
Mimiviridae - enzymology
Mimiviridae - genetics
Mimivirus
NCLDV
NMR
Transaminases - genetics
Transaminases - metabolism
Uridine Diphosphate Sugars - genetics
Uridine Diphosphate Sugars - metabolism
Viosamine
title Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine)
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