Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli
The complete range of published sequences for riboaomal RNA (or rDNA), totalling well over 50,000 bases, has been used to derive refined models for the secondary structures of both 16S and 23S RNA from E. coli. Particular attention has been paid to resolving the differences between the various publi...
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| Veröffentlicht in: | Nucleic acids research 1983-11, Vol.11 (21), p.7263-7286 |
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| container_title | Nucleic acids research |
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| creator | Maly, Peter Brimacombe, Richard |
| description | The complete range of published sequences for riboaomal RNA (or rDNA), totalling well over 50,000 bases, has been used to derive refined models for the secondary structures of both 16S and 23S RNA from E. coli. Particular attention has been paid to resolving the differences between the various published secondary structures for these molecules. The structures are described in terms of 133 helical regions (45 for 16S RNA and 88 for 23S RNA). Of these, approximately 20 are still tentative or unconfirmed. A further 20 represent helical regions which definitely exist, but where the detailed base-pairing is still open to discussion. Over 90 of the helical regions are however now precisely established, at least to within one or two base pairs. |
| doi_str_mv | 10.1093/nar/11.21.7263 |
| format | Article |
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Particular attention has been paid to resolving the differences between the various published secondary structures for these molecules. The structures are described in terms of 133 helical regions (45 for 16S RNA and 88 for 23S RNA). Of these, approximately 20 are still tentative or unconfirmed. A further 20 represent helical regions which definitely exist, but where the detailed base-pairing is still open to discussion. 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Particular attention has been paid to resolving the differences between the various published secondary structures for these molecules. The structures are described in terms of 133 helical regions (45 for 16S RNA and 88 for 23S RNA). Of these, approximately 20 are still tentative or unconfirmed. A further 20 represent helical regions which definitely exist, but where the detailed base-pairing is still open to discussion. Over 90 of the helical regions are however now precisely established, at least to within one or two base pairs.</description><subject>Animals</subject><subject>Base Composition</subject><subject>Escherichia coli</subject><subject>Escherichia coli - genetics</subject><subject>Humans</subject><subject>Macromolecular Substances</subject><subject>Models, Molecular</subject><subject>Nucleic Acid Conformation</subject><subject>RNA, Ribosomal - genetics</subject><subject>Species Specificity</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1983</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1v1DAQxS1EVZaWKzckn7hl67ETfxw4VFXbRVSt1C6i4mI5zoQ1JHFrJwj-e1LtakVPPY1G7_dGM_MIeQ9sCcyIk8GlE4Alh6XiUrwiCxCSF6WR_DVZMMGqAlip35C3Of9kDEqoykNyKEVlWKUX5P4W2zBgQzP6ODQu_aV5TJMfp4S0jw12mbYx0XGDFOQddUNDubijKdQxx9519Pb6lMaWnme_wRT8JjjqYxeOyUHruozvdvWIfL04X5-tiquby89np1eFL8tyLFqjAUXNmlp6psBoI2tELRvglTdlJZVkQjdNi1qgEq7WtZx7qHzNsFJGHJFP27kPU91j43EYk-vsQwr9fIyNLtjnyhA29kf8bQWXpeaz_-POn-LjhHm0fcgeu84NGKdsNVNacCNfBMEIOX9avQwKBUwpNoPLLehTzDlhu98amH0K187hWgDLwT6FOxs-_H_rHt-lOevFVg95xD972aVfViqhKru6_26_rL9dsOvVpV2Lf4Kvr0o</recordid><startdate>19831111</startdate><enddate>19831111</enddate><creator>Maly, Peter</creator><creator>Brimacombe, Richard</creator><general>Oxford University Press</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7TM</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19831111</creationdate><title>Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli</title><author>Maly, Peter ; Brimacombe, Richard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c444t-f981e3b0db6c0719896bee86d125c945676038ddfe83e73ab8b638d15cb0e5793</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1983</creationdate><topic>Animals</topic><topic>Base Composition</topic><topic>Escherichia coli</topic><topic>Escherichia coli - genetics</topic><topic>Humans</topic><topic>Macromolecular Substances</topic><topic>Models, Molecular</topic><topic>Nucleic Acid Conformation</topic><topic>RNA, Ribosomal - genetics</topic><topic>Species Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Maly, Peter</creatorcontrib><creatorcontrib>Brimacombe, Richard</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Maly, Peter</au><au>Brimacombe, Richard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>1983-11-11</date><risdate>1983</risdate><volume>11</volume><issue>21</issue><spage>7263</spage><epage>7286</epage><pages>7263-7286</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>The complete range of published sequences for riboaomal RNA (or rDNA), totalling well over 50,000 bases, has been used to derive refined models for the secondary structures of both 16S and 23S RNA from E. coli. 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| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 1983-11, Vol.11 (21), p.7263-7286 |
| issn | 0305-1048 1362-4962 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_326482 |
| source | Oxford University Press Journals Digital Archive legacy; MEDLINE; PubMed Central |
| subjects | Animals Base Composition Escherichia coli Escherichia coli - genetics Humans Macromolecular Substances Models, Molecular Nucleic Acid Conformation RNA, Ribosomal - genetics Species Specificity |
| title | Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coli |
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