Solanum lycopersicum cytokinin response factor (SlCRF)genes: characterization of CRF domain-containing ERF genes in tomato
Cytokinin is an influential hormone in growth and developmental processes across many plant species. While several cytokinin-regulated genes have been well characterized inArabidopsis, few have been identified in tomato,Solanum lycopersicum. Here a tomato family of 11 highly related cytokinin respon...
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| Veröffentlicht in: | Journal of experimental botany 2012-01, Vol.63 (2), p.973-982 |
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| description | Cytokinin is an influential hormone in growth and developmental processes across many plant species. While several cytokinin-regulated genes have been well characterized inArabidopsis, few have been identified in tomato,Solanum lycopersicum. Here a tomato family of 11 highly related cytokinin response factor genes designated asSlCRF1–SlCRF11 (Solanum lycopersicum cytokinin response factor)are identified and characterized.SlCRFs are AP2/ERF transcription factors and generally orthologous toArabidopsisCRF clade members (AtCRFs). SomeSlCRFgenes lack a directArabidopsisorthologue and oneSlCRF has a unique protein domain arrangement not seen in any other CRF protein. Expression analysis ofSlCRF1–SlCRF11revealed differential patterns and levels across plant tissues examined (leaf, stem, root and flower). SeveralSlCRFs show induction by cytokinin to various degrees, similar toAtCRFs. Additionally it is shown that someSlCRFs can be regulated by other factors, including NaCl, ethylene, methyl jasmonate, and salicylic acid. Examination ofSlCRF proteins in transientAgrobacteriuminfiltration experiments indicates they can be nuclear localizedin planta. Using a bimolecular fluorescence complementation (split-yellow fluorescent protein) system, it is also shown thatSlCRF proteins can interact to form homo- and heterodimers. Overall this work indicates that someSlCRFs resemble previously identified CRFs in terms of structure, expression, and cytokinin regulation. However,SlCRFs have novel CRF protein forms and responses to abiotic factors, suggesting they may have a diverse set of roles in stress and hormone regulation in tomato. |
| doi_str_mv | 10.1093/jxb/err325 |
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While several cytokinin-regulated genes have been well characterized inArabidopsis, few have been identified in tomato,Solanum lycopersicum. Here a tomato family of 11 highly related cytokinin response factor genes designated asSlCRF1–SlCRF11 (Solanum lycopersicum cytokinin response factor)are identified and characterized.SlCRFs are AP2/ERF transcription factors and generally orthologous toArabidopsisCRF clade members (AtCRFs). SomeSlCRFgenes lack a directArabidopsisorthologue and oneSlCRF has a unique protein domain arrangement not seen in any other CRF protein. Expression analysis ofSlCRF1–SlCRF11revealed differential patterns and levels across plant tissues examined (leaf, stem, root and flower). SeveralSlCRFs show induction by cytokinin to various degrees, similar toAtCRFs. Additionally it is shown that someSlCRFs can be regulated by other factors, including NaCl, ethylene, methyl jasmonate, and salicylic acid. Examination ofSlCRF proteins in transientAgrobacteriuminfiltration experiments indicates they can be nuclear localizedin planta. Using a bimolecular fluorescence complementation (split-yellow fluorescent protein) system, it is also shown thatSlCRF proteins can interact to form homo- and heterodimers. Overall this work indicates that someSlCRFs resemble previously identified CRFs in terms of structure, expression, and cytokinin regulation. However,SlCRFs have novel CRF protein forms and responses to abiotic factors, suggesting they may have a diverse set of roles in stress and hormone regulation in tomato.</description><identifier>ISSN: 0022-0957</identifier><identifier>EISSN: 1460-2431</identifier><identifier>DOI: 10.1093/jxb/err325</identifier><identifier>PMID: 22068146</identifier><identifier>CODEN: JEBOA6</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Agrobacterium ; Amino Acid Sequence ; Arabidopsis ; Arabidopsis - genetics ; Arabidopsis - metabolism ; Biological and medical sciences ; Complementary DNA ; Cytokinins ; Cytokinins - metabolism ; Cytokinins - pharmacology ; drug effects ; ethylene ; flowers ; Flowers - genetics ; Flowers - metabolism ; fluorescence ; Fundamental and applied biological sciences. Psychology ; Gene expression regulation ; Gene Expression Regulation, Plant ; Gene Expression Regulation, Plant - genetics ; Genes ; genetics ; growth and development ; Hormones ; leaves ; Lycopersicon esculentum - drug effects ; Lycopersicon esculentum - genetics ; Lycopersicon esculentum - metabolism ; metabolism ; methyl jasmonate ; Molecular Sequence Data ; pharmacology ; Phylogeny ; Plant interaction ; Plant Leaves ; Plant Leaves - genetics ; Plant Leaves - metabolism ; Plant physiology and development ; Plant Proteins ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Plant Roots ; Plant Roots - genetics ; Plant Roots - metabolism ; Plant Stems ; Plant Stems - genetics ; Plant Stems - metabolism ; plant tissues ; Plants ; Protein Binding ; Protein Interaction Mapping ; Protein Multimerization ; Protein Structure, Tertiary ; Proteins ; Protoplasts ; RESEARCH PAPER ; Research Papers ; Reverse transcriptase polymerase chain reaction ; RNA, Plant ; RNA, Plant - genetics ; roots ; salicylic acid ; Sequence Alignment ; Sequence Homology, Amino Acid ; Signal Transduction ; Signal Transduction - genetics ; sodium chloride ; Sodium Chloride - pharmacology ; Solanum lycopersicum ; somatotropin ; stems ; tomatoes ; transcription factors ; Transcription Factors - genetics ; Transcription Factors - metabolism</subject><ispartof>Journal of experimental botany, 2012-01, Vol.63 (2), p.973-982</ispartof><rights>2011 The Author(s)</rights><rights>2015 INIST-CNRS</rights><rights>2011 The Author(s). 2012</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c462t-b214dfee5401faa609398f5dddbc0961a7c127d6011607a8727b9a25b32f74393</citedby><cites>FETCH-LOGICAL-c462t-b214dfee5401faa609398f5dddbc0961a7c127d6011607a8727b9a25b32f74393</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/26205419$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/26205419$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,27903,27904,57995,58228</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25538519$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22068146$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shi, Xiuling</creatorcontrib><creatorcontrib>Gupta, Sarika</creatorcontrib><creatorcontrib>Rashotte, Aaron M.</creatorcontrib><title>Solanum lycopersicum cytokinin response factor (SlCRF)genes: characterization of CRF domain-containing ERF genes in tomato</title><title>Journal of experimental botany</title><addtitle>J Exp Bot</addtitle><description>Cytokinin is an influential hormone in growth and developmental processes across many plant species. While several cytokinin-regulated genes have been well characterized inArabidopsis, few have been identified in tomato,Solanum lycopersicum. Here a tomato family of 11 highly related cytokinin response factor genes designated asSlCRF1–SlCRF11 (Solanum lycopersicum cytokinin response factor)are identified and characterized.SlCRFs are AP2/ERF transcription factors and generally orthologous toArabidopsisCRF clade members (AtCRFs). SomeSlCRFgenes lack a directArabidopsisorthologue and oneSlCRF has a unique protein domain arrangement not seen in any other CRF protein. Expression analysis ofSlCRF1–SlCRF11revealed differential patterns and levels across plant tissues examined (leaf, stem, root and flower). SeveralSlCRFs show induction by cytokinin to various degrees, similar toAtCRFs. Additionally it is shown that someSlCRFs can be regulated by other factors, including NaCl, ethylene, methyl jasmonate, and salicylic acid. Examination ofSlCRF proteins in transientAgrobacteriuminfiltration experiments indicates they can be nuclear localizedin planta. Using a bimolecular fluorescence complementation (split-yellow fluorescent protein) system, it is also shown thatSlCRF proteins can interact to form homo- and heterodimers. Overall this work indicates that someSlCRFs resemble previously identified CRFs in terms of structure, expression, and cytokinin regulation. However,SlCRFs have novel CRF protein forms and responses to abiotic factors, suggesting they may have a diverse set of roles in stress and hormone regulation in tomato.</description><subject>Agrobacterium</subject><subject>Amino Acid Sequence</subject><subject>Arabidopsis</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis - metabolism</subject><subject>Biological and medical sciences</subject><subject>Complementary DNA</subject><subject>Cytokinins</subject><subject>Cytokinins - metabolism</subject><subject>Cytokinins - pharmacology</subject><subject>drug effects</subject><subject>ethylene</subject><subject>flowers</subject><subject>Flowers - genetics</subject><subject>Flowers - metabolism</subject><subject>fluorescence</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene expression regulation</subject><subject>Gene Expression Regulation, Plant</subject><subject>Gene Expression Regulation, Plant - genetics</subject><subject>Genes</subject><subject>genetics</subject><subject>growth and development</subject><subject>Hormones</subject><subject>leaves</subject><subject>Lycopersicon esculentum - drug effects</subject><subject>Lycopersicon esculentum - genetics</subject><subject>Lycopersicon esculentum - metabolism</subject><subject>metabolism</subject><subject>methyl jasmonate</subject><subject>Molecular Sequence Data</subject><subject>pharmacology</subject><subject>Phylogeny</subject><subject>Plant interaction</subject><subject>Plant Leaves</subject><subject>Plant Leaves - genetics</subject><subject>Plant Leaves - metabolism</subject><subject>Plant physiology and development</subject><subject>Plant Proteins</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Plant Roots</subject><subject>Plant Roots - genetics</subject><subject>Plant Roots - metabolism</subject><subject>Plant Stems</subject><subject>Plant Stems - genetics</subject><subject>Plant Stems - metabolism</subject><subject>plant tissues</subject><subject>Plants</subject><subject>Protein Binding</subject><subject>Protein Interaction Mapping</subject><subject>Protein Multimerization</subject><subject>Protein Structure, Tertiary</subject><subject>Proteins</subject><subject>Protoplasts</subject><subject>RESEARCH PAPER</subject><subject>Research Papers</subject><subject>Reverse transcriptase polymerase chain reaction</subject><subject>RNA, Plant</subject><subject>RNA, Plant - genetics</subject><subject>roots</subject><subject>salicylic acid</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><subject>Signal Transduction</subject><subject>Signal Transduction - genetics</subject><subject>sodium chloride</subject><subject>Sodium Chloride - pharmacology</subject><subject>Solanum lycopersicum</subject><subject>somatotropin</subject><subject>stems</subject><subject>tomatoes</subject><subject>transcription factors</subject><subject>Transcription Factors - genetics</subject><subject>Transcription Factors - metabolism</subject><issn>0022-0957</issn><issn>1460-2431</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1LAzEQxYMotlYv3pVexCqsnXxuF0GQYlUoCFbPIZvN1q3bTU22Yv97U1pbvXgawvvx5k0eQscYrjAktDv5SrvGOUr4DmpiJiAijOJd1AQgJIKExw104P0EADhwvo8ahIDoBbKJrke2VNV82i4X2s6M84UOD72o7XtRFVXbGT-zlTftXOnaunZnVPafBxdjUxl_iPZyVXpztJ4t9Dq4e-k_RMOn-8f-7TDSTJA6SglmWW4MZ4BzpUSInPRynmVZqiERWMUakzgTgLGAWPViEqeJIjylJI8ZTWgL3ax8Z_N0ajJtqtqpUs5cMVVuIa0q5F-lKt7k2H7K8CNMJCQYnK8NnP2YG1_LaeG1KcPlxs69TDAXlEK8XNX5l8QMIIQFCgG9XKHaWe-dyTeBMMhlLzL0Ile9BPj09wkb9KeIAJytAeW1KnOnKl34Lcc57XG8DHiy4iY-1LHVBQHOgv4NZZKgFQ</recordid><startdate>20120101</startdate><enddate>20120101</enddate><creator>Shi, Xiuling</creator><creator>Gupta, Sarika</creator><creator>Rashotte, Aaron M.</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7S9</scope><scope>L.6</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20120101</creationdate><title>Solanum lycopersicum cytokinin response factor (SlCRF)genes</title><author>Shi, Xiuling ; Gupta, Sarika ; Rashotte, Aaron M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c462t-b214dfee5401faa609398f5dddbc0961a7c127d6011607a8727b9a25b32f74393</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Agrobacterium</topic><topic>Amino Acid Sequence</topic><topic>Arabidopsis</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis - metabolism</topic><topic>Biological and medical sciences</topic><topic>Complementary DNA</topic><topic>Cytokinins</topic><topic>Cytokinins - metabolism</topic><topic>Cytokinins - pharmacology</topic><topic>drug effects</topic><topic>ethylene</topic><topic>flowers</topic><topic>Flowers - genetics</topic><topic>Flowers - metabolism</topic><topic>fluorescence</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene expression regulation</topic><topic>Gene Expression Regulation, Plant</topic><topic>Gene Expression Regulation, Plant - genetics</topic><topic>Genes</topic><topic>genetics</topic><topic>growth and development</topic><topic>Hormones</topic><topic>leaves</topic><topic>Lycopersicon esculentum - drug effects</topic><topic>Lycopersicon esculentum - genetics</topic><topic>Lycopersicon esculentum - metabolism</topic><topic>metabolism</topic><topic>methyl jasmonate</topic><topic>Molecular Sequence Data</topic><topic>pharmacology</topic><topic>Phylogeny</topic><topic>Plant interaction</topic><topic>Plant Leaves</topic><topic>Plant Leaves - genetics</topic><topic>Plant Leaves - metabolism</topic><topic>Plant physiology and development</topic><topic>Plant Proteins</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Plant Roots</topic><topic>Plant Roots - genetics</topic><topic>Plant Roots - metabolism</topic><topic>Plant Stems</topic><topic>Plant Stems - genetics</topic><topic>Plant Stems - metabolism</topic><topic>plant tissues</topic><topic>Plants</topic><topic>Protein Binding</topic><topic>Protein Interaction Mapping</topic><topic>Protein Multimerization</topic><topic>Protein Structure, Tertiary</topic><topic>Proteins</topic><topic>Protoplasts</topic><topic>RESEARCH PAPER</topic><topic>Research Papers</topic><topic>Reverse transcriptase polymerase chain reaction</topic><topic>RNA, Plant</topic><topic>RNA, Plant - genetics</topic><topic>roots</topic><topic>salicylic acid</topic><topic>Sequence Alignment</topic><topic>Sequence Homology, Amino Acid</topic><topic>Signal Transduction</topic><topic>Signal Transduction - genetics</topic><topic>sodium chloride</topic><topic>Sodium Chloride - pharmacology</topic><topic>Solanum lycopersicum</topic><topic>somatotropin</topic><topic>stems</topic><topic>tomatoes</topic><topic>transcription factors</topic><topic>Transcription Factors - genetics</topic><topic>Transcription Factors - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shi, Xiuling</creatorcontrib><creatorcontrib>Gupta, Sarika</creatorcontrib><creatorcontrib>Rashotte, Aaron M.</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of experimental botany</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shi, Xiuling</au><au>Gupta, Sarika</au><au>Rashotte, Aaron M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Solanum lycopersicum cytokinin response factor (SlCRF)genes: characterization of CRF domain-containing ERF genes in tomato</atitle><jtitle>Journal of experimental botany</jtitle><addtitle>J Exp Bot</addtitle><date>2012-01-01</date><risdate>2012</risdate><volume>63</volume><issue>2</issue><spage>973</spage><epage>982</epage><pages>973-982</pages><issn>0022-0957</issn><eissn>1460-2431</eissn><coden>JEBOA6</coden><abstract>Cytokinin is an influential hormone in growth and developmental processes across many plant species. While several cytokinin-regulated genes have been well characterized inArabidopsis, few have been identified in tomato,Solanum lycopersicum. Here a tomato family of 11 highly related cytokinin response factor genes designated asSlCRF1–SlCRF11 (Solanum lycopersicum cytokinin response factor)are identified and characterized.SlCRFs are AP2/ERF transcription factors and generally orthologous toArabidopsisCRF clade members (AtCRFs). SomeSlCRFgenes lack a directArabidopsisorthologue and oneSlCRF has a unique protein domain arrangement not seen in any other CRF protein. Expression analysis ofSlCRF1–SlCRF11revealed differential patterns and levels across plant tissues examined (leaf, stem, root and flower). SeveralSlCRFs show induction by cytokinin to various degrees, similar toAtCRFs. Additionally it is shown that someSlCRFs can be regulated by other factors, including NaCl, ethylene, methyl jasmonate, and salicylic acid. Examination ofSlCRF proteins in transientAgrobacteriuminfiltration experiments indicates they can be nuclear localizedin planta. Using a bimolecular fluorescence complementation (split-yellow fluorescent protein) system, it is also shown thatSlCRF proteins can interact to form homo- and heterodimers. Overall this work indicates that someSlCRFs resemble previously identified CRFs in terms of structure, expression, and cytokinin regulation. However,SlCRFs have novel CRF protein forms and responses to abiotic factors, suggesting they may have a diverse set of roles in stress and hormone regulation in tomato.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>22068146</pmid><doi>10.1093/jxb/err325</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Agrobacterium Amino Acid Sequence Arabidopsis Arabidopsis - genetics Arabidopsis - metabolism Biological and medical sciences Complementary DNA Cytokinins Cytokinins - metabolism Cytokinins - pharmacology drug effects ethylene flowers Flowers - genetics Flowers - metabolism fluorescence Fundamental and applied biological sciences. Psychology Gene expression regulation Gene Expression Regulation, Plant Gene Expression Regulation, Plant - genetics Genes genetics growth and development Hormones leaves Lycopersicon esculentum - drug effects Lycopersicon esculentum - genetics Lycopersicon esculentum - metabolism metabolism methyl jasmonate Molecular Sequence Data pharmacology Phylogeny Plant interaction Plant Leaves Plant Leaves - genetics Plant Leaves - metabolism Plant physiology and development Plant Proteins Plant Proteins - genetics Plant Proteins - metabolism Plant Roots Plant Roots - genetics Plant Roots - metabolism Plant Stems Plant Stems - genetics Plant Stems - metabolism plant tissues Plants Protein Binding Protein Interaction Mapping Protein Multimerization Protein Structure, Tertiary Proteins Protoplasts RESEARCH PAPER Research Papers Reverse transcriptase polymerase chain reaction RNA, Plant RNA, Plant - genetics roots salicylic acid Sequence Alignment Sequence Homology, Amino Acid Signal Transduction Signal Transduction - genetics sodium chloride Sodium Chloride - pharmacology Solanum lycopersicum somatotropin stems tomatoes transcription factors Transcription Factors - genetics Transcription Factors - metabolism |
| title | Solanum lycopersicum cytokinin response factor (SlCRF)genes: characterization of CRF domain-containing ERF genes in tomato |
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