OriDB, the DNA replication origin database updated and extended
OriDB (http://www.oridb.org/) is a database containing collated genome-wide mapping studies of confirmed and predicted replication origin sites. The original database collated and curated Saccharomyces cerevisiae origin mapping studies. Here, we report that the OriDB database and web site have been...
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| Veröffentlicht in: | Nucleic acids research 2012-01, Vol.40 (D1), p.D682-D686 |
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| container_title | Nucleic acids research |
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| creator | Siow, Cheuk C. Nieduszynska, Sian R. Müller, Carolin A. Nieduszynski, Conrad A. |
| description | OriDB (http://www.oridb.org/) is a database containing collated genome-wide mapping studies of confirmed and predicted replication origin sites. The original database collated and curated Saccharomyces cerevisiae origin mapping studies. Here, we report that the OriDB database and web site have been revamped to improve user accessibility to curated data sets, to greatly increase the number of curated origin mapping studies, and to include the collation of replication origin sites in the fission yeast Schizosaccharomyces pombe. The revised database structure underlies these improvements and will facilitate further expansion in the future. The updated OriDB for S. cerevisiae is available at http://cerevisiae.oridb.org/ and for S. pombe at http://pombe.oridb.org/. |
| doi_str_mv | 10.1093/nar/gkr1091 |
| format | Article |
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The original database collated and curated Saccharomyces cerevisiae origin mapping studies. Here, we report that the OriDB database and web site have been revamped to improve user accessibility to curated data sets, to greatly increase the number of curated origin mapping studies, and to include the collation of replication origin sites in the fission yeast Schizosaccharomyces pombe. The revised database structure underlies these improvements and will facilitate further expansion in the future. 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The original database collated and curated Saccharomyces cerevisiae origin mapping studies. Here, we report that the OriDB database and web site have been revamped to improve user accessibility to curated data sets, to greatly increase the number of curated origin mapping studies, and to include the collation of replication origin sites in the fission yeast Schizosaccharomyces pombe. The revised database structure underlies these improvements and will facilitate further expansion in the future. The updated OriDB for S. cerevisiae is available at http://cerevisiae.oridb.org/ and for S. pombe at http://pombe.oridb.org/.</description><subject>Databases, Nucleic Acid</subject><subject>DNA, Fungal - biosynthesis</subject><subject>DNA, Fungal - chemistry</subject><subject>Genome, Fungal</subject><subject>Replication Origin</subject><subject>Saccharomyces cerevisiae</subject><subject>Saccharomyces cerevisiae - genetics</subject><subject>Schizosaccharomyces - genetics</subject><subject>Schizosaccharomyces pombe</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>TOX</sourceid><sourceid>EIF</sourceid><recordid>eNqFkbtPwzAQhy0EoqUwsSNPMECon3ksIChPqaILzJbtXFtDmgQ7QfDfk6oFwQK64U66T5_u9ENon5JTSjI-LLUfzl58N9MN1Kc8ZpHIYraJ-oQTGVEi0h7aCeGZECqoFNuoxxhdVtxH5xPvri5PcDMHfPVwgT3UhbO6cVWJK-9mrsS5brTRAXBbdyPkWJc5hvcGyhzyXbQ11UWAvXUfoKeb68fRXTSe3N6PLsaRlSRrIgsksYmQnPNMGJlRawRAypLUZkBpyrRIpRVAjBWakyQnCUwh1sZwanhC-ACdrbx1axaQWygbrwtVe7fQ_kNV2qnfm9LN1ax6U5wJSWXSCY7WAl-9thAatXDBQlHoEqo2qIyRlMhYsv9JymKe8Zh25PGKtL4KwcP0-x5K1DIb1WWj1tl09MHPF77ZrzA64HAFVG39p-kT5XSXVg</recordid><startdate>20120101</startdate><enddate>20120101</enddate><creator>Siow, Cheuk C.</creator><creator>Nieduszynska, Sian R.</creator><creator>Müller, Carolin A.</creator><creator>Nieduszynski, Conrad A.</creator><general>Oxford University Press</general><scope>TOX</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>20120101</creationdate><title>OriDB, the DNA replication origin database updated and extended</title><author>Siow, Cheuk C. ; Nieduszynska, Sian R. ; Müller, Carolin A. ; Nieduszynski, Conrad A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c509t-ce07c74533394b591cb4ee8278c9e1182a485c4e0bc4a307d07efe6abb31b3703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Databases, Nucleic Acid</topic><topic>DNA, Fungal - biosynthesis</topic><topic>DNA, Fungal - chemistry</topic><topic>Genome, Fungal</topic><topic>Replication Origin</topic><topic>Saccharomyces cerevisiae</topic><topic>Saccharomyces cerevisiae - genetics</topic><topic>Schizosaccharomyces - genetics</topic><topic>Schizosaccharomyces pombe</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Siow, Cheuk C.</creatorcontrib><creatorcontrib>Nieduszynska, Sian R.</creatorcontrib><creatorcontrib>Müller, Carolin A.</creatorcontrib><creatorcontrib>Nieduszynski, Conrad A.</creatorcontrib><collection>Oxford Journals Open Access Collection</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Siow, Cheuk C.</au><au>Nieduszynska, Sian R.</au><au>Müller, Carolin A.</au><au>Nieduszynski, Conrad A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>OriDB, the DNA replication origin database updated and extended</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2012-01-01</date><risdate>2012</risdate><volume>40</volume><issue>D1</issue><spage>D682</spage><epage>D686</epage><pages>D682-D686</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>OriDB (http://www.oridb.org/) is a database containing collated genome-wide mapping studies of confirmed and predicted replication origin sites. 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| ispartof | Nucleic acids research, 2012-01, Vol.40 (D1), p.D682-D686 |
| issn | 0305-1048 1362-4962 |
| language | eng |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Databases, Nucleic Acid DNA, Fungal - biosynthesis DNA, Fungal - chemistry Genome, Fungal Replication Origin Saccharomyces cerevisiae Saccharomyces cerevisiae - genetics Schizosaccharomyces - genetics Schizosaccharomyces pombe |
| title | OriDB, the DNA replication origin database updated and extended |
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