Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test
Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in o...
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creator | Bardwell, David A. Adjiman, Claire S. Arnautova, Yelena A. Bartashevich, Ekaterina Boerrigter, Stephan X. M. Braun, Doris E. Cruz-Cabeza, Aurora J. Day, Graeme M. Della Valle, Raffaele G. Desiraju, Gautam R. van Eijck, Bouke P. Facelli, Julio C. Ferraro, Marta B. Grillo, Damian Habgood, Matthew Hofmann, Detlef W. M. Hofmann, Fridolin Jose, K. V. Jovan Karamertzanis, Panagiotis G. Kazantsev, Andrei V. Kendrick, John Kuleshova, Liudmila N. Leusen, Frank J. J. Maleev, Andrey V. Misquitta, Alston J. Mohamed, Sharmarke Needs, Richard J. Neumann, Marcus A. Nikylov, Denis Orendt, Anita M. Pal, Rumpa Pantelides, Constantinos C. Pickard, Chris J. Price, Louise S. Price, Sarah L. Scheraga, Harold A. van de Streek, Jacco Thakur, Tejender S. Tiwari, Siddharth Venuti, Elisabetta Zhitkov, Ilia K. |
description | Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi‐flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion‐corrected density functional theory (DFT‐D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome. |
doi_str_mv | 10.1107/S0108768111042868 |
format | Article |
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M. ; Braun, Doris E. ; Cruz-Cabeza, Aurora J. ; Day, Graeme M. ; Della Valle, Raffaele G. ; Desiraju, Gautam R. ; van Eijck, Bouke P. ; Facelli, Julio C. ; Ferraro, Marta B. ; Grillo, Damian ; Habgood, Matthew ; Hofmann, Detlef W. M. ; Hofmann, Fridolin ; Jose, K. V. Jovan ; Karamertzanis, Panagiotis G. ; Kazantsev, Andrei V. ; Kendrick, John ; Kuleshova, Liudmila N. ; Leusen, Frank J. J. ; Maleev, Andrey V. ; Misquitta, Alston J. ; Mohamed, Sharmarke ; Needs, Richard J. ; Neumann, Marcus A. ; Nikylov, Denis ; Orendt, Anita M. ; Pal, Rumpa ; Pantelides, Constantinos C. ; Pickard, Chris J. ; Price, Louise S. ; Price, Sarah L. ; Scheraga, Harold A. ; van de Streek, Jacco ; Thakur, Tejender S. ; Tiwari, Siddharth ; Venuti, Elisabetta ; Zhitkov, Ilia K.</creator><creatorcontrib>Bardwell, David A. ; Adjiman, Claire S. ; Arnautova, Yelena A. ; Bartashevich, Ekaterina ; Boerrigter, Stephan X. M. ; Braun, Doris E. ; Cruz-Cabeza, Aurora J. ; Day, Graeme M. ; Della Valle, Raffaele G. ; Desiraju, Gautam R. ; van Eijck, Bouke P. ; Facelli, Julio C. ; Ferraro, Marta B. ; Grillo, Damian ; Habgood, Matthew ; Hofmann, Detlef W. M. ; Hofmann, Fridolin ; Jose, K. V. Jovan ; Karamertzanis, Panagiotis G. ; Kazantsev, Andrei V. ; Kendrick, John ; Kuleshova, Liudmila N. ; Leusen, Frank J. J. ; Maleev, Andrey V. ; Misquitta, Alston J. ; Mohamed, Sharmarke ; Needs, Richard J. ; Neumann, Marcus A. ; Nikylov, Denis ; Orendt, Anita M. ; Pal, Rumpa ; Pantelides, Constantinos C. ; Pickard, Chris J. ; Price, Louise S. ; Price, Sarah L. ; Scheraga, Harold A. ; van de Streek, Jacco ; Thakur, Tejender S. ; Tiwari, Siddharth ; Venuti, Elisabetta ; Zhitkov, Ilia K.</creatorcontrib><description>Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi‐flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion‐corrected density functional theory (DFT‐D) are able to reliably do so. The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.</description><identifier>ISSN: 0108-7681</identifier><identifier>ISSN: 2052-5192</identifier><identifier>EISSN: 1600-5740</identifier><identifier>EISSN: 2052-5206</identifier><identifier>DOI: 10.1107/S0108768111042868</identifier><identifier>PMID: 22101543</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>blind test ; Crystal structure ; crystal structure prediction ; Crystallography ; Crystallography, X-Ray - methods ; Databases, Factual ; Models, Molecular ; Molecules ; Organic Chemicals - chemistry ; polymorph ; prediction ; Research Papers</subject><ispartof>Acta crystallographica. Section B, Structural science, 2011-12, Vol.67 (6), p.535-551</ispartof><rights>David A. Bardwell et al. 2011</rights><rights>2011 International Union of Crystallography. Printed in Singapore – all rights reserved.</rights><rights>David A. Bardwell et al. 2011</rights><rights>David A. 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J.</creatorcontrib><creatorcontrib>Maleev, Andrey V.</creatorcontrib><creatorcontrib>Misquitta, Alston J.</creatorcontrib><creatorcontrib>Mohamed, Sharmarke</creatorcontrib><creatorcontrib>Needs, Richard J.</creatorcontrib><creatorcontrib>Neumann, Marcus A.</creatorcontrib><creatorcontrib>Nikylov, Denis</creatorcontrib><creatorcontrib>Orendt, Anita M.</creatorcontrib><creatorcontrib>Pal, Rumpa</creatorcontrib><creatorcontrib>Pantelides, Constantinos C.</creatorcontrib><creatorcontrib>Pickard, Chris J.</creatorcontrib><creatorcontrib>Price, Louise S.</creatorcontrib><creatorcontrib>Price, Sarah L.</creatorcontrib><creatorcontrib>Scheraga, Harold A.</creatorcontrib><creatorcontrib>van de Streek, Jacco</creatorcontrib><creatorcontrib>Thakur, Tejender S.</creatorcontrib><creatorcontrib>Tiwari, Siddharth</creatorcontrib><creatorcontrib>Venuti, Elisabetta</creatorcontrib><creatorcontrib>Zhitkov, Ilia K.</creatorcontrib><title>Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test</title><title>Acta crystallographica. Section B, Structural science</title><addtitle>Acta Cryst. B</addtitle><description>Following on from the success of the previous crystal structure prediction blind tests (CSP1999, CSP2001, CSP2004 and CSP2007), a fifth such collaborative project (CSP2010) was organized at the Cambridge Crystallographic Data Centre. A range of methodologies was used by the participating groups in order to evaluate the ability of the current computational methods to predict the crystal structures of the six organic molecules chosen as targets for this blind test. The first four targets, two rigid molecules, one semi‐flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. 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The results also highlight the many challenges posed by more complex systems and show that there are still issues to be overcome.</description><subject>blind test</subject><subject>Crystal structure</subject><subject>crystal structure prediction</subject><subject>Crystallography</subject><subject>Crystallography, X-Ray - methods</subject><subject>Databases, Factual</subject><subject>Models, Molecular</subject><subject>Molecules</subject><subject>Organic Chemicals - chemistry</subject><subject>polymorph</subject><subject>prediction</subject><subject>Research Papers</subject><issn>0108-7681</issn><issn>2052-5192</issn><issn>1600-5740</issn><issn>2052-5206</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EokvhB3BBFhdOgXHir1yQ2hUURAVCLCBOluPYXZdsHGyHdv89Xras-Dhw8oze530140HoIYGnhIB49gEISMElKR2tJZe30IJwgIoJCrfRYidXO_0I3UvpEgAokXAXHdU1AcJos0D9Klzp2Cds4jZlPeCU42zyHC2eou29yT6MODhswmYa7DUO8UKP3vzswzwWZ4U1jnYKMeOC5rXFzru8xt3gxx5nm_J9dMfpIdkHN-8x-vjyxWr5qjp_d_Z6eXJeGV5zXvHG9bQjwIiUjrZtqUXXOEbbUohOU8KkrJ1tGRjphO2ZNa2WvTQ1daZum2P0fJ87zd3G9saOOepBTdFvdNyqoL36Uxn9Wl2E76qpy4_QugQ8uQmI4dtcJlcbn4wdBj3aMCfVAuOCM2gK-fgv8jLMcSzbFUgCZYJDgcgeMjGkFK07jEJA7S6o_rlg8Tz6fYeD49fJCiD3wJUf7Pb_ierky-npG0aAF2u1t_qU7fXBquNXxUUjmPr89ky1Ysk_LflKvW9-AJ8-tlg</recordid><startdate>201112</startdate><enddate>201112</enddate><creator>Bardwell, David A.</creator><creator>Adjiman, Claire S.</creator><creator>Arnautova, Yelena A.</creator><creator>Bartashevich, Ekaterina</creator><creator>Boerrigter, Stephan X. 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The first four targets, two rigid molecules, one semi‐flexible molecule and a 1:1 salt, matched the criteria for the targets from CSP2007, while the last two targets belonged to two new challenging categories – a larger, much more flexible molecule and a hydrate with more than one polymorph. Each group submitted three predictions for each target it attempted. There was at least one successful prediction for each target, and two groups were able to successfully predict the structure of the large flexible molecule as their first place submission. The results show that while not as many groups successfully predicted the structures of the three smallest molecules as in CSP2007, there is now evidence that methodologies such as dispersion‐corrected density functional theory (DFT‐D) are able to reliably do so. 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issn | 0108-7681 2052-5192 1600-5740 2052-5206 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3222142 |
source | Wiley Online Library - AutoHoldings Journals; MEDLINE; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry |
subjects | blind test Crystal structure crystal structure prediction Crystallography Crystallography, X-Ray - methods Databases, Factual Models, Molecular Molecules Organic Chemicals - chemistry polymorph prediction Research Papers |
title | Towards crystal structure prediction of complex organic compounds - a report on the fifth blind test |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-21T20%3A51%3A48IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Towards%20crystal%20structure%20prediction%20of%20complex%20organic%20compounds%20-%20a%20report%20on%20the%20fifth%20blind%20test&rft.jtitle=Acta%20crystallographica.%20Section%20B,%20Structural%20science&rft.au=Bardwell,%20David%20A.&rft.date=2011-12&rft.volume=67&rft.issue=6&rft.spage=535&rft.epage=551&rft.pages=535-551&rft.issn=0108-7681&rft.eissn=1600-5740&rft_id=info:doi/10.1107/S0108768111042868&rft_dat=%3Cproquest_pubme%3E2526662031%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=908045760&rft_id=info:pmid/22101543&rfr_iscdi=true |