Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium

Although approximately 20 common genetic susceptibility loci have been identified for breast cancer risk through genome-wide association studies (GWASs), genetic risk variants reported to date explain only a small fraction of heritability for this common cancer. We conducted a four-stage GWAS includ...

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Veröffentlicht in:Human molecular genetics 2011-12, Vol.20 (24), p.4991-4999
Hauptverfasser: Cai, Qiuyin, Long, Jirong, Lu, Wei, Qu, Shimian, Wen, Wanqing, Kang, Daehee, Lee, Ji-Young, Chen, Kexin, Shen, Hongbing, Shen, Chen-Yang, Sung, Hyuna, Matsuo, Keitaro, Haiman, Christopher A., Khoo, Ui Soon, Ren, Zefang, Iwasaki, Motoki, Gu, Kai, Xiang, Yong-Bing, Choi, Ji-Yeob, Park, Sue K., Zhang, Lina, Hu, Zhibin, Wu, Pei-Ei, Noh, Dong-Young, Tajima, Kazuo, Henderson, Brian E., Chan, Kelvin Y.K., Su, Fengxi, Kasuga, Yoshio, Wang, Wenjing, Cheng, Jia-Rong, Yoo, Keun-Young, Lee, Jong-Young, Zheng, Hong, Liu, Yao, Shieh, Ya-Lan, Kim, Sung-Won, Lee, Jong Won, Iwata, Hiroji, Le Marchand, Loic, Chan, Sum Yin, Xie, Xiaoming, Tsugane, Shoichiro, Lee, Min Hyuk, Wang, Shenming, Li, Guoliang, Levy, Shawn, Huang, Bo, Shi, Jiajun, Delahanty, Ryan, Zheng, Ying, Li, Chun, Gao, Yu-Tang, Shu, Xiao-Ou, Zheng, Wei
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container_end_page 4999
container_issue 24
container_start_page 4991
container_title Human molecular genetics
container_volume 20
creator Cai, Qiuyin
Long, Jirong
Lu, Wei
Qu, Shimian
Wen, Wanqing
Kang, Daehee
Lee, Ji-Young
Chen, Kexin
Shen, Hongbing
Shen, Chen-Yang
Sung, Hyuna
Matsuo, Keitaro
Haiman, Christopher A.
Khoo, Ui Soon
Ren, Zefang
Iwasaki, Motoki
Gu, Kai
Xiang, Yong-Bing
Choi, Ji-Yeob
Park, Sue K.
Zhang, Lina
Hu, Zhibin
Wu, Pei-Ei
Noh, Dong-Young
Tajima, Kazuo
Henderson, Brian E.
Chan, Kelvin Y.K.
Su, Fengxi
Kasuga, Yoshio
Wang, Wenjing
Cheng, Jia-Rong
Yoo, Keun-Young
Lee, Jong-Young
Zheng, Hong
Liu, Yao
Shieh, Ya-Lan
Kim, Sung-Won
Lee, Jong Won
Iwata, Hiroji
Le Marchand, Loic
Chan, Sum Yin
Xie, Xiaoming
Tsugane, Shoichiro
Lee, Min Hyuk
Wang, Shenming
Li, Guoliang
Levy, Shawn
Huang, Bo
Shi, Jiajun
Delahanty, Ryan
Zheng, Ying
Li, Chun
Gao, Yu-Tang
Shu, Xiao-Ou
Zheng, Wei
description Although approximately 20 common genetic susceptibility loci have been identified for breast cancer risk through genome-wide association studies (GWASs), genetic risk variants reported to date explain only a small fraction of heritability for this common cancer. We conducted a four-stage GWAS including 17 153 cases and 16 943 controls among East-Asian women to search for new genetic risk factors for breast cancer. After analyzing 684 457 SNPs in 2062 cases and 2066 controls (Stage I), we selected for replication among 5969 Chinese women (4146 cases and 1823 controls) the top 49 SNPs that had neither been reported previously nor were in strong linkage disequilibrium with reported SNPs (Stage II). Three SNPs were further evaluated in up to 13 152 Chinese and Japanese women (6436 cases and 6716 controls) (Stage III). Finally, two SNPs were evaluated in 10 847 Korean women (4509 cases and 6338 controls) (Stage IV). SNP rs10822013 on chromosome 10q21.2, located in the zinc finger protein 365 (ZNF365) gene, showed a consistent association with breast cancer risk in all four stages with a combined per-risk allele odds ratio of 1.10 (95% CI: 1.07-1.14) (P-value for trend = 5.87 × 10−9). In vitro electrophoretic mobility shift assays demonstrated the potential functional significance of rs10822013. Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.
doi_str_mv 10.1093/hmg/ddr405
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In vitro electrophoretic mobility shift assays demonstrated the potential functional significance of rs10822013. Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.</description><identifier>ISSN: 0964-6906</identifier><identifier>EISSN: 1460-2083</identifier><identifier>DOI: 10.1093/hmg/ddr405</identifier><identifier>PMID: 21908515</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Adult ; Aged ; Alleles ; Asia ; Association Studies ; Biological and medical sciences ; Breast Neoplasms - genetics ; Cell Line, Tumor ; Chromosomes, Human, Pair 10 - genetics ; Female ; Fundamental and applied biological sciences. Psychology ; Genetic Predisposition to Disease ; Genetics of eukaryotes. Biological and molecular evolution ; Genome-Wide Association Study ; Gynecology. Andrology. Obstetrics ; Humans ; Mammary gland diseases ; Medical sciences ; Menopause - genetics ; Middle Aged ; Molecular and cellular biology ; Odds Ratio ; Polymorphism, Single Nucleotide - genetics ; Tumors</subject><ispartof>Human molecular genetics, 2011-12, Vol.20 (24), p.4991-4999</ispartof><rights>The Author 2011. Published by Oxford University Press. All rights reserved. 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We conducted a four-stage GWAS including 17 153 cases and 16 943 controls among East-Asian women to search for new genetic risk factors for breast cancer. After analyzing 684 457 SNPs in 2062 cases and 2066 controls (Stage I), we selected for replication among 5969 Chinese women (4146 cases and 1823 controls) the top 49 SNPs that had neither been reported previously nor were in strong linkage disequilibrium with reported SNPs (Stage II). Three SNPs were further evaluated in up to 13 152 Chinese and Japanese women (6436 cases and 6716 controls) (Stage III). Finally, two SNPs were evaluated in 10 847 Korean women (4509 cases and 6338 controls) (Stage IV). SNP rs10822013 on chromosome 10q21.2, located in the zinc finger protein 365 (ZNF365) gene, showed a consistent association with breast cancer risk in all four stages with a combined per-risk allele odds ratio of 1.10 (95% CI: 1.07-1.14) (P-value for trend = 5.87 × 10−9). In vitro electrophoretic mobility shift assays demonstrated the potential functional significance of rs10822013. Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.</description><subject>Adult</subject><subject>Aged</subject><subject>Alleles</subject><subject>Asia</subject><subject>Association Studies</subject><subject>Biological and medical sciences</subject><subject>Breast Neoplasms - genetics</subject><subject>Cell Line, Tumor</subject><subject>Chromosomes, Human, Pair 10 - genetics</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genome-Wide Association Study</subject><subject>Gynecology. Andrology. Obstetrics</subject><subject>Humans</subject><subject>Mammary gland diseases</subject><subject>Medical sciences</subject><subject>Menopause - genetics</subject><subject>Middle Aged</subject><subject>Molecular and cellular biology</subject><subject>Odds Ratio</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Tumors</subject><issn>0964-6906</issn><issn>1460-2083</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kctu1EAQRVsIRCaBDR-AesMGyUn1e8wCKYzyQIrEBtZWuV3ONIzdQ3c7KBu-PUbOAzasSqo695aqLmNvBBwLqNXJdrg-6bqkwTxjK6EtVBLW6jlbQW11ZWuwB-ww5-8AwmrlXrIDKWpYG2FW7PcFjXGg6lfoiGPO0QcsIY48l6m75XN3LKEPlHmbCHPhHkdPiaeQf_AbTAHHwrFwAT-lOJYfeKI87UrmfYoDL1vipzkg_7SIN4t4E8ccUwnT8Iq96HGX6fV9PWLfzs--bi6rqy8XnzenV5XXTpSKEMg7a9Aq0tpLZVyNstVCOCNlD05Qa3RNSraidX1roXYtOfAkwbraqiP2cfHdT-1AnZ-vSrhr9ikMmG6biKH5dzKGbXMdbxolpTBazgbvFwOfYs6J-ketgOZPCs2cQrOkMMNv_972iD68fQbe3QOYPe76NP8l5CfOSKfMGp64OO3_t_AOy6mfKQ</recordid><startdate>20111215</startdate><enddate>20111215</enddate><creator>Cai, Qiuyin</creator><creator>Long, Jirong</creator><creator>Lu, Wei</creator><creator>Qu, Shimian</creator><creator>Wen, Wanqing</creator><creator>Kang, Daehee</creator><creator>Lee, Ji-Young</creator><creator>Chen, Kexin</creator><creator>Shen, Hongbing</creator><creator>Shen, Chen-Yang</creator><creator>Sung, Hyuna</creator><creator>Matsuo, Keitaro</creator><creator>Haiman, Christopher A.</creator><creator>Khoo, Ui Soon</creator><creator>Ren, Zefang</creator><creator>Iwasaki, Motoki</creator><creator>Gu, Kai</creator><creator>Xiang, Yong-Bing</creator><creator>Choi, Ji-Yeob</creator><creator>Park, Sue K.</creator><creator>Zhang, Lina</creator><creator>Hu, Zhibin</creator><creator>Wu, Pei-Ei</creator><creator>Noh, Dong-Young</creator><creator>Tajima, Kazuo</creator><creator>Henderson, Brian E.</creator><creator>Chan, Kelvin Y.K.</creator><creator>Su, Fengxi</creator><creator>Kasuga, Yoshio</creator><creator>Wang, Wenjing</creator><creator>Cheng, Jia-Rong</creator><creator>Yoo, Keun-Young</creator><creator>Lee, Jong-Young</creator><creator>Zheng, Hong</creator><creator>Liu, Yao</creator><creator>Shieh, Ya-Lan</creator><creator>Kim, Sung-Won</creator><creator>Lee, Jong Won</creator><creator>Iwata, Hiroji</creator><creator>Le Marchand, Loic</creator><creator>Chan, Sum Yin</creator><creator>Xie, Xiaoming</creator><creator>Tsugane, Shoichiro</creator><creator>Lee, Min Hyuk</creator><creator>Wang, Shenming</creator><creator>Li, Guoliang</creator><creator>Levy, Shawn</creator><creator>Huang, Bo</creator><creator>Shi, Jiajun</creator><creator>Delahanty, Ryan</creator><creator>Zheng, Ying</creator><creator>Li, Chun</creator><creator>Gao, Yu-Tang</creator><creator>Shu, Xiao-Ou</creator><creator>Zheng, Wei</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>20111215</creationdate><title>Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium</title><author>Cai, Qiuyin ; Long, Jirong ; Lu, Wei ; Qu, Shimian ; Wen, Wanqing ; Kang, Daehee ; Lee, Ji-Young ; Chen, Kexin ; Shen, Hongbing ; Shen, Chen-Yang ; Sung, Hyuna ; Matsuo, Keitaro ; Haiman, Christopher A. ; Khoo, Ui Soon ; Ren, Zefang ; Iwasaki, Motoki ; Gu, Kai ; Xiang, Yong-Bing ; Choi, Ji-Yeob ; Park, Sue K. ; Zhang, Lina ; Hu, Zhibin ; Wu, Pei-Ei ; Noh, Dong-Young ; Tajima, Kazuo ; Henderson, Brian E. ; Chan, Kelvin Y.K. ; Su, Fengxi ; Kasuga, Yoshio ; Wang, Wenjing ; Cheng, Jia-Rong ; Yoo, Keun-Young ; Lee, Jong-Young ; Zheng, Hong ; Liu, Yao ; Shieh, Ya-Lan ; Kim, Sung-Won ; Lee, Jong Won ; Iwata, Hiroji ; Le Marchand, Loic ; Chan, Sum Yin ; Xie, Xiaoming ; Tsugane, Shoichiro ; Lee, Min Hyuk ; Wang, Shenming ; Li, Guoliang ; Levy, Shawn ; Huang, Bo ; Shi, Jiajun ; Delahanty, Ryan ; Zheng, Ying ; Li, Chun ; Gao, Yu-Tang ; Shu, Xiao-Ou ; Zheng, Wei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c471t-ea0ec765a63e44c23579a2b4117522f071eb549e32b1b7fb6097be70ce2067963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Alleles</topic><topic>Asia</topic><topic>Association Studies</topic><topic>Biological and medical sciences</topic><topic>Breast Neoplasms - genetics</topic><topic>Cell Line, Tumor</topic><topic>Chromosomes, Human, Pair 10 - genetics</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. 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Wei</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Human molecular genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cai, Qiuyin</au><au>Long, Jirong</au><au>Lu, Wei</au><au>Qu, Shimian</au><au>Wen, Wanqing</au><au>Kang, Daehee</au><au>Lee, Ji-Young</au><au>Chen, Kexin</au><au>Shen, Hongbing</au><au>Shen, Chen-Yang</au><au>Sung, Hyuna</au><au>Matsuo, Keitaro</au><au>Haiman, Christopher A.</au><au>Khoo, Ui Soon</au><au>Ren, Zefang</au><au>Iwasaki, Motoki</au><au>Gu, Kai</au><au>Xiang, Yong-Bing</au><au>Choi, Ji-Yeob</au><au>Park, Sue K.</au><au>Zhang, Lina</au><au>Hu, Zhibin</au><au>Wu, Pei-Ei</au><au>Noh, Dong-Young</au><au>Tajima, Kazuo</au><au>Henderson, Brian E.</au><au>Chan, Kelvin Y.K.</au><au>Su, Fengxi</au><au>Kasuga, Yoshio</au><au>Wang, Wenjing</au><au>Cheng, Jia-Rong</au><au>Yoo, Keun-Young</au><au>Lee, Jong-Young</au><au>Zheng, Hong</au><au>Liu, Yao</au><au>Shieh, Ya-Lan</au><au>Kim, Sung-Won</au><au>Lee, Jong Won</au><au>Iwata, Hiroji</au><au>Le Marchand, Loic</au><au>Chan, Sum Yin</au><au>Xie, Xiaoming</au><au>Tsugane, Shoichiro</au><au>Lee, Min Hyuk</au><au>Wang, Shenming</au><au>Li, Guoliang</au><au>Levy, Shawn</au><au>Huang, Bo</au><au>Shi, Jiajun</au><au>Delahanty, Ryan</au><au>Zheng, Ying</au><au>Li, Chun</au><au>Gao, Yu-Tang</au><au>Shu, Xiao-Ou</au><au>Zheng, Wei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium</atitle><jtitle>Human molecular genetics</jtitle><addtitle>Hum Mol Genet</addtitle><date>2011-12-15</date><risdate>2011</risdate><volume>20</volume><issue>24</issue><spage>4991</spage><epage>4999</epage><pages>4991-4999</pages><issn>0964-6906</issn><eissn>1460-2083</eissn><abstract>Although approximately 20 common genetic susceptibility loci have been identified for breast cancer risk through genome-wide association studies (GWASs), genetic risk variants reported to date explain only a small fraction of heritability for this common cancer. We conducted a four-stage GWAS including 17 153 cases and 16 943 controls among East-Asian women to search for new genetic risk factors for breast cancer. After analyzing 684 457 SNPs in 2062 cases and 2066 controls (Stage I), we selected for replication among 5969 Chinese women (4146 cases and 1823 controls) the top 49 SNPs that had neither been reported previously nor were in strong linkage disequilibrium with reported SNPs (Stage II). Three SNPs were further evaluated in up to 13 152 Chinese and Japanese women (6436 cases and 6716 controls) (Stage III). Finally, two SNPs were evaluated in 10 847 Korean women (4509 cases and 6338 controls) (Stage IV). SNP rs10822013 on chromosome 10q21.2, located in the zinc finger protein 365 (ZNF365) gene, showed a consistent association with breast cancer risk in all four stages with a combined per-risk allele odds ratio of 1.10 (95% CI: 1.07-1.14) (P-value for trend = 5.87 × 10−9). In vitro electrophoretic mobility shift assays demonstrated the potential functional significance of rs10822013. Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>21908515</pmid><doi>10.1093/hmg/ddr405</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
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issn 0964-6906
1460-2083
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source Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection
subjects Adult
Aged
Alleles
Asia
Association Studies
Biological and medical sciences
Breast Neoplasms - genetics
Cell Line, Tumor
Chromosomes, Human, Pair 10 - genetics
Female
Fundamental and applied biological sciences. Psychology
Genetic Predisposition to Disease
Genetics of eukaryotes. Biological and molecular evolution
Genome-Wide Association Study
Gynecology. Andrology. Obstetrics
Humans
Mammary gland diseases
Medical sciences
Menopause - genetics
Middle Aged
Molecular and cellular biology
Odds Ratio
Polymorphism, Single Nucleotide - genetics
Tumors
title Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium
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