Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
The methodologies used to generate genome and metagenome annotations are diverse and vary between groups and laboratories. Descriptions of the annotation process are helpful in interpreting genome annotation data. Some groups have produced Standard Operating Procedures (SOPs) that describe the annot...
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| Veröffentlicht in: | Omics (Larchmont, N.Y.) N.Y.), 2008-06, Vol.12 (2), p.137-141 |
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| creator | Angiuoli, Samuel V. Gussman, Aaron Klimke, William Cochrane, Guy Field, Dawn Garrity, George M. Kodira, Chinnappa D. Kyrpides, Nikos Madupu, Ramana Markowitz, Victor Tatusova, Tatiana Thomson, Nick White, Owen |
| description | The methodologies used to generate genome and metagenome annotations are diverse and vary between groups and laboratories. Descriptions of the annotation process are helpful in interpreting genome annotation data. Some groups have produced Standard Operating Procedures (SOPs) that describe the annotation process, but standards are lacking for structure and content of these descriptions. In addition, there is no central repository to store and disseminate procedures and protocols for genome annotation. We highlight the importance of SOPs for genome annotation and endorse an online repository of SOPs. |
| doi_str_mv | 10.1089/omi.2008.0017 |
| format | Article |
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We highlight the importance of SOPs for genome annotation and endorse an online repository of SOPs.</description><subject>Analysis</subject><subject>Computational biology</subject><subject>Databases, Genetic - standards</subject><subject>Genomics</subject><subject>Information management</subject><subject>Internet</subject><subject>Online databases</subject><subject>Online Systems - standards</subject><subject>ORIGINAL PAPERS</subject><issn>1536-2310</issn><issn>1557-8100</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkt9rFDEQx4Motp4--iqLgrTInvm12eyLcBR_QeWKrc8xm51cI3vJNcm19L83yx3WA0HykDD5zHeG7wxCLwmeEyy792Ht5hRjOceYtI_QMWmatpYE48fTm4maMoKP0LOUfmFMiaDsKToikhMhWnyMfl6FOx2HSvtq6UfnofoOm5BcDvG-Cra6zNoPE7DcQNTZ-VV1EYOBYRshVSeXy4t0WtkQq5NvkPXpCnxpyFQL70MuePDP0ROrxwQv9vcM_fj08ersS32-_Pz1bHFeG0Forq1kDeGUWdpSakjbdrzHUg68J_3ABNGmG7iU1kLPtcXa8qYrDKNMN4YCYTP0Yae72fZrGAz4HPWoNtGtdbxXQTt1-OPdtVqFW8VIJ2hxaoZe7wRCyk4l4zKYaxO8B5MVmazspipv91ViuNlCymrtkoFx1B7CNinRUdZILP4LlpGJpuW8gG924EqPoJy3oXRnJlgtiKRCcNlNcvN_UOUMUOwOHqwr8YOEepdgYkgpgv3jBMFqWhxV5jR1IdW0OIV_9bd9D_R-UwrwbgdMYe3LrkAPMT8YfCD3G08_zCg</recordid><startdate>20080601</startdate><enddate>20080601</enddate><creator>Angiuoli, Samuel V.</creator><creator>Gussman, Aaron</creator><creator>Klimke, William</creator><creator>Cochrane, Guy</creator><creator>Field, Dawn</creator><creator>Garrity, George M.</creator><creator>Kodira, Chinnappa D.</creator><creator>Kyrpides, Nikos</creator><creator>Madupu, Ramana</creator><creator>Markowitz, Victor</creator><creator>Tatusova, Tatiana</creator><creator>Thomson, Nick</creator><creator>White, Owen</creator><general>Mary Ann Liebert, Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>20080601</creationdate><title>Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation</title><author>Angiuoli, Samuel V. ; 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Descriptions of the annotation process are helpful in interpreting genome annotation data. Some groups have produced Standard Operating Procedures (SOPs) that describe the annotation process, but standards are lacking for structure and content of these descriptions. In addition, there is no central repository to store and disseminate procedures and protocols for genome annotation. We highlight the importance of SOPs for genome annotation and endorse an online repository of SOPs.</abstract><cop>United States</cop><pub>Mary Ann Liebert, Inc</pub><pmid>18416670</pmid><doi>10.1089/omi.2008.0017</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1536-2310 |
| ispartof | Omics (Larchmont, N.Y.), 2008-06, Vol.12 (2), p.137-141 |
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| language | eng |
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| source | MEDLINE; Alma/SFX Local Collection |
| subjects | Analysis Computational biology Databases, Genetic - standards Genomics Information management Internet Online databases Online Systems - standards ORIGINAL PAPERS |
| title | Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation |
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