BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium
The cAMP response element-binding protein (CREB) is a highly conserved transcription factor that integrates signaling through the cAMP-dependent protein kinase A (PKA) in many eukaryotes. PKA plays a critical role in Dictyostelium development but no CREB homologue has been identified in this system....
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creator | Huang, Eryong Talukder, Shaheynoor Hughes, Timothy R. Curk, Tomaz Zupan, Blaz Shaulsky, Gad Katoh-Kurasawa, Mariko |
description | The cAMP response element-binding protein (CREB) is a highly conserved transcription factor that integrates signaling through the cAMP-dependent protein kinase A (PKA) in many eukaryotes. PKA plays a critical role in Dictyostelium development but no CREB homologue has been identified in this system. Here we show that Dictyostelium utilizes a CREB-like protein, BzpF, to integrate PKA signaling during late development. bzpF− mutants produce compromised spores, which are extremely unstable and germination defective. Previously, we have found that BzpF binds the canonical CRE motif in vitro. In this paper, we determined the DNA binding specificity of BzpF using protein binding microarray (PBM) and showed that the motif with the highest specificity is a CRE-like sequence. BzpF is necessary to activate the transcription of at least 15 PKA-regulated, late-developmental target genes whose promoters contain BzpF binding motifs. BzpF is sufficient to activate two of these genes. The comparison of RNA sequencing data between wild type and bzpF− mutant revealed that the mutant fails to express 205 genes, many of which encode cellulose-binding and sugar-binding proteins. We propose that BzpF is a CREB-like transcription factor that regulates spore maturation and stability in a PKA-related manner.
► Dictyostelium bZIP protein BzpF binds to CRE-like sequence with high specificity. ► bzpF is expressed preferentially in spores during late culmination stage. ► Loss of BzpF results in severe defects in spore maturation and stability. ► We found 15 PKA-regulated, late-developmental genes as potential BzpF direct targets. ► Many under-expressed genes in bzpF− encode cellulose- and sugar-binding proteins. |
doi_str_mv | 10.1016/j.ydbio.2011.07.017 |
format | Article |
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► Dictyostelium bZIP protein BzpF binds to CRE-like sequence with high specificity. ► bzpF is expressed preferentially in spores during late culmination stage. ► Loss of BzpF results in severe defects in spore maturation and stability. ► We found 15 PKA-regulated, late-developmental genes as potential BzpF direct targets. ► Many under-expressed genes in bzpF− encode cellulose- and sugar-binding proteins.</description><identifier>ISSN: 0012-1606</identifier><identifier>EISSN: 1095-564X</identifier><identifier>DOI: 10.1016/j.ydbio.2011.07.017</identifier><identifier>PMID: 21810415</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>cAMP-dependent protein kinase ; CREB-like bZIP transcription factor BzpF ; cyclic AMP ; Cyclic AMP response element-binding protein ; Cyclic AMP Response Element-Binding Protein - genetics ; Cyclic AMP Response Element-Binding Protein - metabolism ; Cyclic AMP-Dependent Protein Kinases - metabolism ; Data processing ; Development ; Dictyostelium ; Dictyostelium - physiology ; DNA ; DNA microarrays ; DNA Primers - genetics ; eukaryotic cells ; genes ; Germination ; Late-developmental target genes ; Microarray Analysis ; microarray technology ; mutants ; Nucleotide sequence ; PKA pathway ; Plasmids - genetics ; Promoters ; Protein arrays ; Protein Binding ; Protein kinase A ; proteins ; Reverse Transcriptase Polymerase Chain Reaction ; RNA ; Sequence Analysis, RNA ; Signal Transduction - physiology ; Spore maturation ; Spore stability ; Spores ; Spores, Protozoan - growth & development ; Spores, Protozoan - metabolism ; Transcription factors</subject><ispartof>Developmental biology, 2011-10, Vol.358 (1), p.137-146</ispartof><rights>2011 Elsevier Inc.</rights><rights>Copyright © 2011 Elsevier Inc. All rights reserved.</rights><rights>2011 Elsevier Inc. All rights reserved. 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c547t-1b787d13833ee4e64dca978c73cea39ea0255ba287389fc56a4f9b386f157faf3</citedby><cites>FETCH-LOGICAL-c547t-1b787d13833ee4e64dca978c73cea39ea0255ba287389fc56a4f9b386f157faf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S001216061101133X$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,3537,27901,27902,65534</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21810415$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huang, Eryong</creatorcontrib><creatorcontrib>Talukder, Shaheynoor</creatorcontrib><creatorcontrib>Hughes, Timothy R.</creatorcontrib><creatorcontrib>Curk, Tomaz</creatorcontrib><creatorcontrib>Zupan, Blaz</creatorcontrib><creatorcontrib>Shaulsky, Gad</creatorcontrib><creatorcontrib>Katoh-Kurasawa, Mariko</creatorcontrib><title>BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium</title><title>Developmental biology</title><addtitle>Dev Biol</addtitle><description>The cAMP response element-binding protein (CREB) is a highly conserved transcription factor that integrates signaling through the cAMP-dependent protein kinase A (PKA) in many eukaryotes. PKA plays a critical role in Dictyostelium development but no CREB homologue has been identified in this system. Here we show that Dictyostelium utilizes a CREB-like protein, BzpF, to integrate PKA signaling during late development. bzpF− mutants produce compromised spores, which are extremely unstable and germination defective. Previously, we have found that BzpF binds the canonical CRE motif in vitro. In this paper, we determined the DNA binding specificity of BzpF using protein binding microarray (PBM) and showed that the motif with the highest specificity is a CRE-like sequence. BzpF is necessary to activate the transcription of at least 15 PKA-regulated, late-developmental target genes whose promoters contain BzpF binding motifs. BzpF is sufficient to activate two of these genes. The comparison of RNA sequencing data between wild type and bzpF− mutant revealed that the mutant fails to express 205 genes, many of which encode cellulose-binding and sugar-binding proteins. We propose that BzpF is a CREB-like transcription factor that regulates spore maturation and stability in a PKA-related manner.
► Dictyostelium bZIP protein BzpF binds to CRE-like sequence with high specificity. ► bzpF is expressed preferentially in spores during late culmination stage. ► Loss of BzpF results in severe defects in spore maturation and stability. ► We found 15 PKA-regulated, late-developmental genes as potential BzpF direct targets. ► Many under-expressed genes in bzpF− encode cellulose- and sugar-binding proteins.</description><subject>cAMP-dependent protein kinase</subject><subject>CREB-like bZIP transcription factor BzpF</subject><subject>cyclic AMP</subject><subject>Cyclic AMP response element-binding protein</subject><subject>Cyclic AMP Response Element-Binding Protein - genetics</subject><subject>Cyclic AMP Response Element-Binding Protein - metabolism</subject><subject>Cyclic AMP-Dependent Protein Kinases - metabolism</subject><subject>Data processing</subject><subject>Development</subject><subject>Dictyostelium</subject><subject>Dictyostelium - physiology</subject><subject>DNA</subject><subject>DNA microarrays</subject><subject>DNA Primers - genetics</subject><subject>eukaryotic cells</subject><subject>genes</subject><subject>Germination</subject><subject>Late-developmental target genes</subject><subject>Microarray Analysis</subject><subject>microarray technology</subject><subject>mutants</subject><subject>Nucleotide sequence</subject><subject>PKA pathway</subject><subject>Plasmids - genetics</subject><subject>Promoters</subject><subject>Protein arrays</subject><subject>Protein Binding</subject><subject>Protein kinase A</subject><subject>proteins</subject><subject>Reverse Transcriptase Polymerase Chain Reaction</subject><subject>RNA</subject><subject>Sequence Analysis, RNA</subject><subject>Signal Transduction - physiology</subject><subject>Spore maturation</subject><subject>Spore stability</subject><subject>Spores</subject><subject>Spores, Protozoan - growth & development</subject><subject>Spores, Protozoan - metabolism</subject><subject>Transcription factors</subject><issn>0012-1606</issn><issn>1095-564X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFksFu1DAQhi0EotuFJ0AC3-CSYMdJ7ByoRJcWkCohAZW4WRNnsvWSjYPtVNo-Pd5uqeBSTj74m39m_JmQF5zlnPH67Sbfda11ecE4z5nMGZePyIKzpsqquvzxmCwY40XGa1YfkeMQNowxoZR4So4KrjgrebUg69Ob6ZzaQIGuvp6dZoP9iTR6GIPxdorWjbQHE52n8Qoi9bieB4gYaJicR7qFOHu4xWDsaIjQ2sHGHbUj_WBN3LkQcbDz9hl50sMQ8PnduSSX52ffV5-yiy8fP6_eX2SmKmXMeCuV7LhQQiCWWJedgUYqI4VBEA0CK6qqhUJJoZreVDWUfdMKVfe8kj30YklODrnT3G6xMzimZQY9ebsFv9MOrP73ZrRXeu2uteCKNZyngNd3Ad79mjFEvbXB4DDAiG4OumEyPZ4qiv-SSjVc1kzsM988SKbWIjVX5R4VB9R4F4LH_n50zvReu97oW-16r10zqZP2VPXy763va_54TsCrA9CD07D2NujLbymhTn9CCZamXJJ3BwKTnWuLXgdjcTTYWY8m6s7ZB0f4DbKkyj8</recordid><startdate>20111001</startdate><enddate>20111001</enddate><creator>Huang, Eryong</creator><creator>Talukder, Shaheynoor</creator><creator>Hughes, Timothy R.</creator><creator>Curk, Tomaz</creator><creator>Zupan, Blaz</creator><creator>Shaulsky, Gad</creator><creator>Katoh-Kurasawa, Mariko</creator><general>Elsevier Inc</general><scope>6I.</scope><scope>AAFTH</scope><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7S9</scope><scope>L.6</scope><scope>7X8</scope><scope>7TM</scope><scope>M7N</scope><scope>5PM</scope></search><sort><creationdate>20111001</creationdate><title>BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium</title><author>Huang, Eryong ; Talukder, Shaheynoor ; Hughes, Timothy R. ; Curk, Tomaz ; Zupan, Blaz ; Shaulsky, Gad ; Katoh-Kurasawa, Mariko</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c547t-1b787d13833ee4e64dca978c73cea39ea0255ba287389fc56a4f9b386f157faf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>cAMP-dependent protein kinase</topic><topic>CREB-like bZIP transcription factor BzpF</topic><topic>cyclic AMP</topic><topic>Cyclic AMP response element-binding protein</topic><topic>Cyclic AMP Response Element-Binding Protein - genetics</topic><topic>Cyclic AMP Response Element-Binding Protein - metabolism</topic><topic>Cyclic AMP-Dependent Protein Kinases - metabolism</topic><topic>Data processing</topic><topic>Development</topic><topic>Dictyostelium</topic><topic>Dictyostelium - physiology</topic><topic>DNA</topic><topic>DNA microarrays</topic><topic>DNA Primers - genetics</topic><topic>eukaryotic cells</topic><topic>genes</topic><topic>Germination</topic><topic>Late-developmental target genes</topic><topic>Microarray Analysis</topic><topic>microarray technology</topic><topic>mutants</topic><topic>Nucleotide sequence</topic><topic>PKA pathway</topic><topic>Plasmids - genetics</topic><topic>Promoters</topic><topic>Protein arrays</topic><topic>Protein Binding</topic><topic>Protein kinase A</topic><topic>proteins</topic><topic>Reverse Transcriptase Polymerase Chain Reaction</topic><topic>RNA</topic><topic>Sequence Analysis, RNA</topic><topic>Signal Transduction - physiology</topic><topic>Spore maturation</topic><topic>Spore stability</topic><topic>Spores</topic><topic>Spores, Protozoan - growth & development</topic><topic>Spores, Protozoan - metabolism</topic><topic>Transcription factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huang, Eryong</creatorcontrib><creatorcontrib>Talukder, Shaheynoor</creatorcontrib><creatorcontrib>Hughes, Timothy R.</creatorcontrib><creatorcontrib>Curk, Tomaz</creatorcontrib><creatorcontrib>Zupan, Blaz</creatorcontrib><creatorcontrib>Shaulsky, Gad</creatorcontrib><creatorcontrib>Katoh-Kurasawa, Mariko</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Developmental biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huang, Eryong</au><au>Talukder, Shaheynoor</au><au>Hughes, Timothy R.</au><au>Curk, Tomaz</au><au>Zupan, Blaz</au><au>Shaulsky, Gad</au><au>Katoh-Kurasawa, Mariko</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium</atitle><jtitle>Developmental biology</jtitle><addtitle>Dev Biol</addtitle><date>2011-10-01</date><risdate>2011</risdate><volume>358</volume><issue>1</issue><spage>137</spage><epage>146</epage><pages>137-146</pages><issn>0012-1606</issn><eissn>1095-564X</eissn><abstract>The cAMP response element-binding protein (CREB) is a highly conserved transcription factor that integrates signaling through the cAMP-dependent protein kinase A (PKA) in many eukaryotes. PKA plays a critical role in Dictyostelium development but no CREB homologue has been identified in this system. Here we show that Dictyostelium utilizes a CREB-like protein, BzpF, to integrate PKA signaling during late development. bzpF− mutants produce compromised spores, which are extremely unstable and germination defective. Previously, we have found that BzpF binds the canonical CRE motif in vitro. In this paper, we determined the DNA binding specificity of BzpF using protein binding microarray (PBM) and showed that the motif with the highest specificity is a CRE-like sequence. BzpF is necessary to activate the transcription of at least 15 PKA-regulated, late-developmental target genes whose promoters contain BzpF binding motifs. BzpF is sufficient to activate two of these genes. The comparison of RNA sequencing data between wild type and bzpF− mutant revealed that the mutant fails to express 205 genes, many of which encode cellulose-binding and sugar-binding proteins. We propose that BzpF is a CREB-like transcription factor that regulates spore maturation and stability in a PKA-related manner.
► Dictyostelium bZIP protein BzpF binds to CRE-like sequence with high specificity. ► bzpF is expressed preferentially in spores during late culmination stage. ► Loss of BzpF results in severe defects in spore maturation and stability. ► We found 15 PKA-regulated, late-developmental genes as potential BzpF direct targets. ► Many under-expressed genes in bzpF− encode cellulose- and sugar-binding proteins.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>21810415</pmid><doi>10.1016/j.ydbio.2011.07.017</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | cAMP-dependent protein kinase CREB-like bZIP transcription factor BzpF cyclic AMP Cyclic AMP response element-binding protein Cyclic AMP Response Element-Binding Protein - genetics Cyclic AMP Response Element-Binding Protein - metabolism Cyclic AMP-Dependent Protein Kinases - metabolism Data processing Development Dictyostelium Dictyostelium - physiology DNA DNA microarrays DNA Primers - genetics eukaryotic cells genes Germination Late-developmental target genes Microarray Analysis microarray technology mutants Nucleotide sequence PKA pathway Plasmids - genetics Promoters Protein arrays Protein Binding Protein kinase A proteins Reverse Transcriptase Polymerase Chain Reaction RNA Sequence Analysis, RNA Signal Transduction - physiology Spore maturation Spore stability Spores Spores, Protozoan - growth & development Spores, Protozoan - metabolism Transcription factors |
title | BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium |
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