The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins

We have determined the DNA sequence of the 4070 base pair mitochondrial plasmid from the Labelle-1b strain of Neurospora intermedia. Analysis of the sequence revealed that the plasmid contains a long open reading frame (ORF) that could encode a protein of up to 1151 amino acids. Codon usage in the l...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Nucleic acids research 1989-03, Vol.17 (5), p.2023-2042
Hauptverfasser: PANDE, S, LEMIRE, E. G, NARGANG, F. E
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 2042
container_issue 5
container_start_page 2023
container_title Nucleic acids research
container_volume 17
creator PANDE, S
LEMIRE, E. G
NARGANG, F. E
description We have determined the DNA sequence of the 4070 base pair mitochondrial plasmid from the Labelle-1b strain of Neurospora intermedia. Analysis of the sequence revealed that the plasmid contains a long open reading frame (ORF) that could encode a protein of up to 1151 amino acids. Codon usage in the long ORF shows no clear relationship to Neurospora mitochondrial genes, nuclear genes, nor to the ORF of a different Neurospora mitochondrial plasmid. The long ORF contains regions of similarity to yeast mitochondrial RNA polymerase as well as blocks of amino acids that are characteristic of reverse transcriptases and the ORFs of certain group II mtDNA introns (Michel and Lang, (1985) Nature 316,641). The plasmid gives rise to specific transcripts, some of which may be unit length, and which carry the information for expression of the long ORF. The genetic organization and content of the plasmid suggest that it is related to mobile genetic elements.
doi_str_mv 10.1093/nar/17.5.2023
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_317540</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>78891648</sourcerecordid><originalsourceid>FETCH-LOGICAL-c433t-a0e5bbfac51cf23f824ce644db5133182b0a481443b577ec91df74df6c45627c3</originalsourceid><addsrcrecordid>eNqFUruO1DAUjRBoGRZKSiQXiC6zfiaZggKteEkjaJbaunGuNwbHDrZnEb_Hl-HRjkZQbWXZ5_jcxzlN85LRLaM7cRUgXbF-q7accvGo2TDR8VbuOv642VBBVcuoHJ42z3L-TimTTMmL5oLLrudKbpo_NzOSxZVo5him5MCT1UNe3ERsigv5gocU8xoTEBcKpgUnBySXBC6QPYzoPbZsJCaGUp8yAeJjuCVxxUASwuTqxSZYkPxyZSajj-ZHJtESWFyIBIybMjEzJDBV3uXizBFNeIcpI6mFQjbJrQUyVvUwVchDwYmsKRasJZ83Tyz4jC9O52Xz7cP7m-tP7f7rx8_X7_atkUKUFiiqcbRgFDOWCztwabCTchoVE4INfKQgByalGFXfo9mxyfZysp2RquO9EZfN23vd9TDWNRgMtTmv1-QWSL91BKf_R4Kb9W2804L1StL6_83pf4o_D5iLXlw2dYEQMB6y7odhxzo5PEhk1VzV84cVq9d1Ht5VYntPNNXMnNCeu2ZUH1Oka4o067XSxxRV_qt_Rz2zT7Gp-OsTDtmAr_4G4_KZ1g2DUIMSfwG1N9ZR</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>15414426</pqid></control><display><type>article</type><title>The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins</title><source>MEDLINE</source><source>PubMed Central</source><source>Oxford University Press Journals Digital Archive Legacy</source><creator>PANDE, S ; LEMIRE, E. G ; NARGANG, F. E</creator><creatorcontrib>PANDE, S ; LEMIRE, E. G ; NARGANG, F. E</creatorcontrib><description>We have determined the DNA sequence of the 4070 base pair mitochondrial plasmid from the Labelle-1b strain of Neurospora intermedia. Analysis of the sequence revealed that the plasmid contains a long open reading frame (ORF) that could encode a protein of up to 1151 amino acids. Codon usage in the long ORF shows no clear relationship to Neurospora mitochondrial genes, nuclear genes, nor to the ORF of a different Neurospora mitochondrial plasmid. The long ORF contains regions of similarity to yeast mitochondrial RNA polymerase as well as blocks of amino acids that are characteristic of reverse transcriptases and the ORFs of certain group II mtDNA introns (Michel and Lang, (1985) Nature 316,641). The plasmid gives rise to specific transcripts, some of which may be unit length, and which carry the information for expression of the long ORF. The genetic organization and content of the plasmid suggest that it is related to mobile genetic elements.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/17.5.2023</identifier><identifier>PMID: 2467254</identifier><identifier>CODEN: NARHAD</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Amino Acid Sequence ; Base Sequence ; Biological and medical sciences ; Codon ; DNA, Fungal - isolation &amp; purification ; DNA, Mitochondrial - isolation &amp; purification ; Fundamental and applied biological sciences. Psychology ; Fungal Proteins - genetics ; Fungal Proteins - isolation &amp; purification ; Genes, Fungal ; Genes. Genome ; Molecular and cellular biology ; Molecular genetics ; Molecular Sequence Data ; Neurospora ; Neurospora - genetics ; Neurospora intermedia ; Plasmids ; Protein Biosynthesis ; RNA-Directed DNA Polymerase - genetics ; Sequence Homology, Nucleic Acid ; Transcription, Genetic</subject><ispartof>Nucleic acids research, 1989-03, Vol.17 (5), p.2023-2042</ispartof><rights>1990 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c433t-a0e5bbfac51cf23f824ce644db5133182b0a481443b577ec91df74df6c45627c3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC317540/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC317540/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=6883585$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/2467254$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>PANDE, S</creatorcontrib><creatorcontrib>LEMIRE, E. G</creatorcontrib><creatorcontrib>NARGANG, F. E</creatorcontrib><title>The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>We have determined the DNA sequence of the 4070 base pair mitochondrial plasmid from the Labelle-1b strain of Neurospora intermedia. Analysis of the sequence revealed that the plasmid contains a long open reading frame (ORF) that could encode a protein of up to 1151 amino acids. Codon usage in the long ORF shows no clear relationship to Neurospora mitochondrial genes, nuclear genes, nor to the ORF of a different Neurospora mitochondrial plasmid. The long ORF contains regions of similarity to yeast mitochondrial RNA polymerase as well as blocks of amino acids that are characteristic of reverse transcriptases and the ORFs of certain group II mtDNA introns (Michel and Lang, (1985) Nature 316,641). The plasmid gives rise to specific transcripts, some of which may be unit length, and which carry the information for expression of the long ORF. The genetic organization and content of the plasmid suggest that it is related to mobile genetic elements.</description><subject>Amino Acid Sequence</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Codon</subject><subject>DNA, Fungal - isolation &amp; purification</subject><subject>DNA, Mitochondrial - isolation &amp; purification</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Fungal Proteins - genetics</subject><subject>Fungal Proteins - isolation &amp; purification</subject><subject>Genes, Fungal</subject><subject>Genes. Genome</subject><subject>Molecular and cellular biology</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>Neurospora</subject><subject>Neurospora - genetics</subject><subject>Neurospora intermedia</subject><subject>Plasmids</subject><subject>Protein Biosynthesis</subject><subject>RNA-Directed DNA Polymerase - genetics</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Transcription, Genetic</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1989</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFUruO1DAUjRBoGRZKSiQXiC6zfiaZggKteEkjaJbaunGuNwbHDrZnEb_Hl-HRjkZQbWXZ5_jcxzlN85LRLaM7cRUgXbF-q7accvGo2TDR8VbuOv642VBBVcuoHJ42z3L-TimTTMmL5oLLrudKbpo_NzOSxZVo5him5MCT1UNe3ERsigv5gocU8xoTEBcKpgUnBySXBC6QPYzoPbZsJCaGUp8yAeJjuCVxxUASwuTqxSZYkPxyZSajj-ZHJtESWFyIBIybMjEzJDBV3uXizBFNeIcpI6mFQjbJrQUyVvUwVchDwYmsKRasJZ83Tyz4jC9O52Xz7cP7m-tP7f7rx8_X7_atkUKUFiiqcbRgFDOWCztwabCTchoVE4INfKQgByalGFXfo9mxyfZysp2RquO9EZfN23vd9TDWNRgMtTmv1-QWSL91BKf_R4Kb9W2804L1StL6_83pf4o_D5iLXlw2dYEQMB6y7odhxzo5PEhk1VzV84cVq9d1Ht5VYntPNNXMnNCeu2ZUH1Oka4o067XSxxRV_qt_Rz2zT7Gp-OsTDtmAr_4G4_KZ1g2DUIMSfwG1N9ZR</recordid><startdate>19890311</startdate><enddate>19890311</enddate><creator>PANDE, S</creator><creator>LEMIRE, E. G</creator><creator>NARGANG, F. E</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19890311</creationdate><title>The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins</title><author>PANDE, S ; LEMIRE, E. G ; NARGANG, F. E</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c433t-a0e5bbfac51cf23f824ce644db5133182b0a481443b577ec91df74df6c45627c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1989</creationdate><topic>Amino Acid Sequence</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Codon</topic><topic>DNA, Fungal - isolation &amp; purification</topic><topic>DNA, Mitochondrial - isolation &amp; purification</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Fungal Proteins - genetics</topic><topic>Fungal Proteins - isolation &amp; purification</topic><topic>Genes, Fungal</topic><topic>Genes. Genome</topic><topic>Molecular and cellular biology</topic><topic>Molecular genetics</topic><topic>Molecular Sequence Data</topic><topic>Neurospora</topic><topic>Neurospora - genetics</topic><topic>Neurospora intermedia</topic><topic>Plasmids</topic><topic>Protein Biosynthesis</topic><topic>RNA-Directed DNA Polymerase - genetics</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>PANDE, S</creatorcontrib><creatorcontrib>LEMIRE, E. G</creatorcontrib><creatorcontrib>NARGANG, F. E</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>PANDE, S</au><au>LEMIRE, E. G</au><au>NARGANG, F. E</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>1989-03-11</date><risdate>1989</risdate><volume>17</volume><issue>5</issue><spage>2023</spage><epage>2042</epage><pages>2023-2042</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><coden>NARHAD</coden><abstract>We have determined the DNA sequence of the 4070 base pair mitochondrial plasmid from the Labelle-1b strain of Neurospora intermedia. Analysis of the sequence revealed that the plasmid contains a long open reading frame (ORF) that could encode a protein of up to 1151 amino acids. Codon usage in the long ORF shows no clear relationship to Neurospora mitochondrial genes, nuclear genes, nor to the ORF of a different Neurospora mitochondrial plasmid. The long ORF contains regions of similarity to yeast mitochondrial RNA polymerase as well as blocks of amino acids that are characteristic of reverse transcriptases and the ORFs of certain group II mtDNA introns (Michel and Lang, (1985) Nature 316,641). The plasmid gives rise to specific transcripts, some of which may be unit length, and which carry the information for expression of the long ORF. The genetic organization and content of the plasmid suggest that it is related to mobile genetic elements.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>2467254</pmid><doi>10.1093/nar/17.5.2023</doi><tpages>20</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0305-1048
ispartof Nucleic acids research, 1989-03, Vol.17 (5), p.2023-2042
issn 0305-1048
1362-4962
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_317540
source MEDLINE; PubMed Central; Oxford University Press Journals Digital Archive Legacy
subjects Amino Acid Sequence
Base Sequence
Biological and medical sciences
Codon
DNA, Fungal - isolation & purification
DNA, Mitochondrial - isolation & purification
Fundamental and applied biological sciences. Psychology
Fungal Proteins - genetics
Fungal Proteins - isolation & purification
Genes, Fungal
Genes. Genome
Molecular and cellular biology
Molecular genetics
Molecular Sequence Data
Neurospora
Neurospora - genetics
Neurospora intermedia
Plasmids
Protein Biosynthesis
RNA-Directed DNA Polymerase - genetics
Sequence Homology, Nucleic Acid
Transcription, Genetic
title The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T18%3A33%3A19IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20mitochondrial%20plasmid%20from%20Neurospora%20intermedia%20strain%20Labelle-1b%20contains%20a%20long%20open%20reading%20frame%20with%20blocks%20of%20amino%20acids%20characteristic%20of%20reverse%20transcriptases%20and%20related%20proteins&rft.jtitle=Nucleic%20acids%20research&rft.au=PANDE,%20S&rft.date=1989-03-11&rft.volume=17&rft.issue=5&rft.spage=2023&rft.epage=2042&rft.pages=2023-2042&rft.issn=0305-1048&rft.eissn=1362-4962&rft.coden=NARHAD&rft_id=info:doi/10.1093/nar/17.5.2023&rft_dat=%3Cproquest_pubme%3E78891648%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=15414426&rft_id=info:pmid/2467254&rfr_iscdi=true