The EMBL Nucleotide Sequence Database
The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl/), maintained at the European Bioinformatics Institute (EBI), incorporates, organizes and distributes nucleotide sequences from public sources. The database is a part of an international collaboration with DDBJ (Japan) and GenBank (USA...
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| Veröffentlicht in: | Nucleic acids research 2004-01, Vol.32 (suppl-1), p.D27-D30 |
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| creator | Kulikova, Tamara Aldebert, Philippe Althorpe, Nicola Baker, Wendy Bates, Kirsty Browne, Paul van den Broek, Alexandra Cochrane, Guy Duggan, Karyn Eberhardt, Ruth Faruque, Nadeem Garcia‐Pastor, Maria Harte, Nicola Kanz, Carola Leinonen, Rasko Lin, Quan Lombard, Vincent Lopez, Rodrigo Mancuso, Renato McHale, Michelle Nardone, Francesco Silventoinen, Ville Stoehr, Peter Stoesser, Guenter Tuli, Mary Ann Tzouvara, Katerina Vaughan, Robert Wu, Dan Zhu, Weimin Apweiler, Rolf |
| description | The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl/), maintained at the European Bioinformatics Institute (EBI), incorporates, organizes and distributes nucleotide sequences from public sources. The database is a part of an international collaboration with DDBJ (Japan) and GenBank (USA). Data are exchanged between the collaborating databases on a daily basis to achieve optimal synchrony. The web‐based tool, Webin, is the preferred system for individual submission of nucleotide sequences, including Third Party Annotation (TPA) and alignment data. Automatic submission procedures are used for submission of data from large‐scale genome sequencing centres and from the European Patent Office. Database releases are produced quarterly. The latest data collection can be accessed via FTP, email and WWW interfaces. The EBI’s Sequence Retrieval System (SRS) integrates and links the main nucleotide and protein databases as well as many other specialist molecular biology databases. For sequence similarity searching, a variety of tools (e.g. FASTA and BLAST) are available that allow external users to compare their own sequences against the data in the EMBL Nucleotide Sequence Database, the complete genomic component subsection of the database, the WGS data sets and other databases. All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk. |
| doi_str_mv | 10.1093/nar/gkh120 |
| format | Article |
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The database is a part of an international collaboration with DDBJ (Japan) and GenBank (USA). Data are exchanged between the collaborating databases on a daily basis to achieve optimal synchrony. The web‐based tool, Webin, is the preferred system for individual submission of nucleotide sequences, including Third Party Annotation (TPA) and alignment data. Automatic submission procedures are used for submission of data from large‐scale genome sequencing centres and from the European Patent Office. Database releases are produced quarterly. The latest data collection can be accessed via FTP, email and WWW interfaces. The EBI’s Sequence Retrieval System (SRS) integrates and links the main nucleotide and protein databases as well as many other specialist molecular biology databases. For sequence similarity searching, a variety of tools (e.g. FASTA and BLAST) are available that allow external users to compare their own sequences against the data in the EMBL Nucleotide Sequence Database, the complete genomic component subsection of the database, the WGS data sets and other databases. All available resources can be accessed via the EBI home page at http://www.ebi.ac.uk.</description><identifier>ISSN: 0305-1048</identifier><identifier>ISSN: 1362-4962</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkh120</identifier><identifier>PMID: 14681351</identifier><identifier>CODEN: NARHAD</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Animals ; Databases, Nucleic Acid ; Europe ; Genomics ; Humans ; Information Storage and Retrieval ; Internet</subject><ispartof>Nucleic acids research, 2004-01, Vol.32 (suppl-1), p.D27-D30</ispartof><rights>Copyright Oxford University Press(England) Jan 01, 2004</rights><rights>Copyright © 2004 Oxford University Press 2004</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c527t-d8240e1e7809bfa42a745b755a66de2435f5fb8238a94cfe4814a81858ed27a53</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC308854/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC308854/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14681351$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kulikova, Tamara</creatorcontrib><creatorcontrib>Aldebert, Philippe</creatorcontrib><creatorcontrib>Althorpe, Nicola</creatorcontrib><creatorcontrib>Baker, Wendy</creatorcontrib><creatorcontrib>Bates, Kirsty</creatorcontrib><creatorcontrib>Browne, Paul</creatorcontrib><creatorcontrib>van den Broek, Alexandra</creatorcontrib><creatorcontrib>Cochrane, Guy</creatorcontrib><creatorcontrib>Duggan, Karyn</creatorcontrib><creatorcontrib>Eberhardt, Ruth</creatorcontrib><creatorcontrib>Faruque, Nadeem</creatorcontrib><creatorcontrib>Garcia‐Pastor, Maria</creatorcontrib><creatorcontrib>Harte, Nicola</creatorcontrib><creatorcontrib>Kanz, Carola</creatorcontrib><creatorcontrib>Leinonen, Rasko</creatorcontrib><creatorcontrib>Lin, Quan</creatorcontrib><creatorcontrib>Lombard, Vincent</creatorcontrib><creatorcontrib>Lopez, Rodrigo</creatorcontrib><creatorcontrib>Mancuso, Renato</creatorcontrib><creatorcontrib>McHale, Michelle</creatorcontrib><creatorcontrib>Nardone, Francesco</creatorcontrib><creatorcontrib>Silventoinen, Ville</creatorcontrib><creatorcontrib>Stoehr, Peter</creatorcontrib><creatorcontrib>Stoesser, Guenter</creatorcontrib><creatorcontrib>Tuli, Mary Ann</creatorcontrib><creatorcontrib>Tzouvara, Katerina</creatorcontrib><creatorcontrib>Vaughan, Robert</creatorcontrib><creatorcontrib>Wu, Dan</creatorcontrib><creatorcontrib>Zhu, Weimin</creatorcontrib><creatorcontrib>Apweiler, Rolf</creatorcontrib><title>The EMBL Nucleotide Sequence Database</title><title>Nucleic acids research</title><addtitle>Nucl. Acids Res</addtitle><description>The EMBL Nucleotide Sequence Database (http://www.ebi.ac.uk/embl/), maintained at the European Bioinformatics Institute (EBI), incorporates, organizes and distributes nucleotide sequences from public sources. The database is a part of an international collaboration with DDBJ (Japan) and GenBank (USA). Data are exchanged between the collaborating databases on a daily basis to achieve optimal synchrony. The web‐based tool, Webin, is the preferred system for individual submission of nucleotide sequences, including Third Party Annotation (TPA) and alignment data. Automatic submission procedures are used for submission of data from large‐scale genome sequencing centres and from the European Patent Office. Database releases are produced quarterly. The latest data collection can be accessed via FTP, email and WWW interfaces. 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| fulltext | fulltext |
| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 2004-01, Vol.32 (suppl-1), p.D27-D30 |
| issn | 0305-1048 1362-4962 1362-4962 |
| language | eng |
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| source | Oxford Journals Open Access Collection; MEDLINE; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Animals Databases, Nucleic Acid Europe Genomics Humans Information Storage and Retrieval Internet |
| title | The EMBL Nucleotide Sequence Database |
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