Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method
An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss what we believe are new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the...
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Veröffentlicht in: | Biophysical journal 2010-04, Vol.98 (7), p.1364-1372 |
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creator | Tejedor, Vincent Bénichou, Olivier Voituriez, Raphael Jungmann, Ralf Simmel, Friedrich Selhuber-Unkel, Christine Oddershede, Lene B. Metzler, Ralf |
description | An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss what we believe are new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions (MMEs), i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean-squared displacement we show that the MME analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the MME method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. We put the methods to test using experimental data as well as simulated time series from different models for normal and anomalous dynamics such as diffusion on fractals, continuous time random walks, and fractional Brownian motion. |
doi_str_mv | 10.1016/j.bpj.2009.12.4282 |
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We here propose and discuss what we believe are new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions (MMEs), i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean-squared displacement we show that the MME analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the MME method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. 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All rights reserved.</rights><rights>Copyright Biophysical Society Apr 7, 2010</rights><rights>2010 by the Biophysical Society. 2010 Biophysical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c579t-4d4ae9e8bd6dabbb77d50ca0bdf9029ff532b5bc144893a51b6366e9aa948c2a3</citedby><cites>FETCH-LOGICAL-c579t-4d4ae9e8bd6dabbb77d50ca0bdf9029ff532b5bc144893a51b6366e9aa948c2a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849086/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0006349509060974$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,3536,27903,27904,53769,53771,65309</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20371337$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tejedor, Vincent</creatorcontrib><creatorcontrib>Bénichou, Olivier</creatorcontrib><creatorcontrib>Voituriez, Raphael</creatorcontrib><creatorcontrib>Jungmann, Ralf</creatorcontrib><creatorcontrib>Simmel, Friedrich</creatorcontrib><creatorcontrib>Selhuber-Unkel, Christine</creatorcontrib><creatorcontrib>Oddershede, Lene B.</creatorcontrib><creatorcontrib>Metzler, Ralf</creatorcontrib><title>Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method</title><title>Biophysical journal</title><addtitle>Biophys J</addtitle><description>An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss what we believe are new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions (MMEs), i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean-squared displacement we show that the MME analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the MME method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. 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subjects | Algorithms Atoms & subatomic particles Biophysics Biophysics - methods Comparative analysis Complex systems Computer simulation Diffusion Focusing Fractal analysis Fractals Lipids - chemistry Mathematical models Models, Biological Molecular Conformation Motion Physics Quantitative analysis Reproducibility of Results Spectroscopy, Imaging, and Other Techniques Stochastic Processes Time Factors Time series |
title | Quantitative Analysis of Single Particle Trajectories: Mean Maximal Excursion Method |
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