Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters
Transporters move hydrophilic substrates across hydrophobic biological membranes and play key roles in plant nutrition, metabolism, and signaling and, consequently, in plant growth, development, and responses to the environment. To initiate and support systematic characterization of transporters in...
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| Veröffentlicht in: | Plant physiology (Bethesda) 2010-03, Vol.152 (3), p.1716-1730 |
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| creator | Benedito, Vagner A Li, Haiquan Dai, Xinbin Wandrey, Maren He, Ji Kaundal, Rakesh Torres-Jerez, Ivone Gomez, S. Karen Harrison, Maria J Tang, Yuhong Zhao, Patrick X Udvardi, Michael K |
| description | Transporters move hydrophilic substrates across hydrophobic biological membranes and play key roles in plant nutrition, metabolism, and signaling and, consequently, in plant growth, development, and responses to the environment. To initiate and support systematic characterization of transporters in the model legume Medicago truncatula, we identified 3,830 transporters and classified 2,673 of these into 113 families and 146 subfamilies. Analysis of gene expression data for 2,611 of these transporters identified 129 that are expressed in an organ-specific manner, including 50 that are nodule specific and 36 specific to mycorrhizal roots. Further analysis uncovered 196 transporters that are induced at least 5-fold during nodule development and 44 in roots during arbuscular mycorrhizal symbiosis. Among the nodule- and mycorrhiza-induced transporter genes are many candidates for known transport activities in these beneficial symbioses. The data presented here are a unique resource for the selection and functional characterization of legume transporters. |
| doi_str_mv | 10.1104/pp.109.148684 |
| format | Article |
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Further analysis uncovered 196 transporters that are induced at least 5-fold during nodule development and 44 in roots during arbuscular mycorrhizal symbiosis. Among the nodule- and mycorrhiza-induced transporter genes are many candidates for known transport activities in these beneficial symbioses. The data presented here are a unique resource for the selection and functional characterization of legume transporters.</description><identifier>ISSN: 0032-0889</identifier><identifier>ISSN: 1532-2548</identifier><identifier>EISSN: 1532-2548</identifier><identifier>DOI: 10.1104/pp.109.148684</identifier><identifier>PMID: 20023147</identifier><identifier>CODEN: PPHYA5</identifier><language>eng</language><publisher>Rockville, MD: American Society of Plant Biologists</publisher><subject>Biological and medical sciences ; Cell membranes ; Chromosome Mapping ; Expressed Sequence Tags ; Fundamental and applied biological sciences. Psychology ; Gene expression ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genes ; Genes, Plant ; Genome, Plant ; Legumes ; Medicago truncatula - genetics ; Membrane transport proteins ; Membrane Transport Proteins - genetics ; Nodules ; Oligonucleotide Array Sequence Analysis ; Plant physiology and development ; Plant Proteins - genetics ; Plant Root Nodulation ; Plant roots ; Plants ; PLANTS INTERACTING WITH OTHER ORGANISMS ; Porters ; Sequence Analysis, DNA ; Sequence Analysis, Protein ; Symbiosis</subject><ispartof>Plant physiology (Bethesda), 2010-03, Vol.152 (3), p.1716-1730</ispartof><rights>2010 American Society of Plant Biologists</rights><rights>2015 INIST-CNRS</rights><rights>2010 American Society of Plant Biologists 2010</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c528t-b42fccfdb4b39a99cd4363705e2e9d5cdb8b7c2d8058f447cc195aa9ca9a046e3</citedby><cites>FETCH-LOGICAL-c528t-b42fccfdb4b39a99cd4363705e2e9d5cdb8b7c2d8058f447cc195aa9ca9a046e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/25680769$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/25680769$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22598240$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20023147$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Benedito, Vagner A</creatorcontrib><creatorcontrib>Li, Haiquan</creatorcontrib><creatorcontrib>Dai, Xinbin</creatorcontrib><creatorcontrib>Wandrey, Maren</creatorcontrib><creatorcontrib>He, Ji</creatorcontrib><creatorcontrib>Kaundal, Rakesh</creatorcontrib><creatorcontrib>Torres-Jerez, Ivone</creatorcontrib><creatorcontrib>Gomez, S. Karen</creatorcontrib><creatorcontrib>Harrison, Maria J</creatorcontrib><creatorcontrib>Tang, Yuhong</creatorcontrib><creatorcontrib>Zhao, Patrick X</creatorcontrib><creatorcontrib>Udvardi, Michael K</creatorcontrib><title>Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters</title><title>Plant physiology (Bethesda)</title><addtitle>Plant Physiol</addtitle><description>Transporters move hydrophilic substrates across hydrophobic biological membranes and play key roles in plant nutrition, metabolism, and signaling and, consequently, in plant growth, development, and responses to the environment. To initiate and support systematic characterization of transporters in the model legume Medicago truncatula, we identified 3,830 transporters and classified 2,673 of these into 113 families and 146 subfamilies. Analysis of gene expression data for 2,611 of these transporters identified 129 that are expressed in an organ-specific manner, including 50 that are nodule specific and 36 specific to mycorrhizal roots. Further analysis uncovered 196 transporters that are induced at least 5-fold during nodule development and 44 in roots during arbuscular mycorrhizal symbiosis. Among the nodule- and mycorrhiza-induced transporter genes are many candidates for known transport activities in these beneficial symbioses. The data presented here are a unique resource for the selection and functional characterization of legume transporters.</description><subject>Biological and medical sciences</subject><subject>Cell membranes</subject><subject>Chromosome Mapping</subject><subject>Expressed Sequence Tags</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genes, Plant</subject><subject>Genome, Plant</subject><subject>Legumes</subject><subject>Medicago truncatula - genetics</subject><subject>Membrane transport proteins</subject><subject>Membrane Transport Proteins - genetics</subject><subject>Nodules</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Plant physiology and development</subject><subject>Plant Proteins - genetics</subject><subject>Plant Root Nodulation</subject><subject>Plant roots</subject><subject>Plants</subject><subject>PLANTS INTERACTING WITH OTHER ORGANISMS</subject><subject>Porters</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Analysis, Protein</subject><subject>Symbiosis</subject><issn>0032-0889</issn><issn>1532-2548</issn><issn>1532-2548</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkc1v1DAQxS0EokvhyBHIBXHKMv5K7AtSVUGpVIQE7dmaOM7iKmsHO6m0_z2usrRw8Yz0fnp-mkfIawpbSkF8nKYtBb2lQjVKPCEbKjmrmRTqKdkAlB2U0ifkRc63AEA5Fc_JCQNgZWs35MeFC3HvbXUZ7lyYYzpUGPrqOmHINvlp9jHgWJ2V55B9ruJQfXO9t7iL1ZyWYHFeRlz5KabZpfySPBtwzO7VcZ6Smy-fr8-_1lffLy7Pz65qK5ma606wwdqh70THNWpte8Eb3oJ0zOle2r5TXWtZr0CqQYjWWqoloraoEUTj-Cn5tPpOS7d3vS3xE45mSn6P6WAievO_Evwvs4t3hinOmKTF4MPRIMXfi8uz2fts3ThicHHJpuWcC9BcF7JeSZtizskND79QMPc1mGkqqzZrDYV_-2-0B_rv3Qvw_ghgtjgO5XzW50eOSa2YgMK9WbnbXLp51GWjoG3ug71b9QGjwV0qHjc_WakZqKKlec7_AO-wpb0</recordid><startdate>20100301</startdate><enddate>20100301</enddate><creator>Benedito, Vagner A</creator><creator>Li, Haiquan</creator><creator>Dai, Xinbin</creator><creator>Wandrey, Maren</creator><creator>He, Ji</creator><creator>Kaundal, Rakesh</creator><creator>Torres-Jerez, Ivone</creator><creator>Gomez, S. Karen</creator><creator>Harrison, Maria J</creator><creator>Tang, Yuhong</creator><creator>Zhao, Patrick X</creator><creator>Udvardi, Michael K</creator><general>American Society of Plant Biologists</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20100301</creationdate><title>Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters</title><author>Benedito, Vagner A ; Li, Haiquan ; Dai, Xinbin ; Wandrey, Maren ; He, Ji ; Kaundal, Rakesh ; Torres-Jerez, Ivone ; Gomez, S. 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Psychology</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Genes, Plant</topic><topic>Genome, Plant</topic><topic>Legumes</topic><topic>Medicago truncatula - genetics</topic><topic>Membrane transport proteins</topic><topic>Membrane Transport Proteins - genetics</topic><topic>Nodules</topic><topic>Oligonucleotide Array Sequence Analysis</topic><topic>Plant physiology and development</topic><topic>Plant Proteins - genetics</topic><topic>Plant Root Nodulation</topic><topic>Plant roots</topic><topic>Plants</topic><topic>PLANTS INTERACTING WITH OTHER ORGANISMS</topic><topic>Porters</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Analysis, Protein</topic><topic>Symbiosis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Benedito, Vagner A</creatorcontrib><creatorcontrib>Li, Haiquan</creatorcontrib><creatorcontrib>Dai, Xinbin</creatorcontrib><creatorcontrib>Wandrey, Maren</creatorcontrib><creatorcontrib>He, Ji</creatorcontrib><creatorcontrib>Kaundal, Rakesh</creatorcontrib><creatorcontrib>Torres-Jerez, Ivone</creatorcontrib><creatorcontrib>Gomez, S. Karen</creatorcontrib><creatorcontrib>Harrison, Maria J</creatorcontrib><creatorcontrib>Tang, Yuhong</creatorcontrib><creatorcontrib>Zhao, Patrick X</creatorcontrib><creatorcontrib>Udvardi, Michael K</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Plant physiology (Bethesda)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Benedito, Vagner A</au><au>Li, Haiquan</au><au>Dai, Xinbin</au><au>Wandrey, Maren</au><au>He, Ji</au><au>Kaundal, Rakesh</au><au>Torres-Jerez, Ivone</au><au>Gomez, S. Karen</au><au>Harrison, Maria J</au><au>Tang, Yuhong</au><au>Zhao, Patrick X</au><au>Udvardi, Michael K</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters</atitle><jtitle>Plant physiology (Bethesda)</jtitle><addtitle>Plant Physiol</addtitle><date>2010-03-01</date><risdate>2010</risdate><volume>152</volume><issue>3</issue><spage>1716</spage><epage>1730</epage><pages>1716-1730</pages><issn>0032-0889</issn><issn>1532-2548</issn><eissn>1532-2548</eissn><coden>PPHYA5</coden><abstract>Transporters move hydrophilic substrates across hydrophobic biological membranes and play key roles in plant nutrition, metabolism, and signaling and, consequently, in plant growth, development, and responses to the environment. To initiate and support systematic characterization of transporters in the model legume Medicago truncatula, we identified 3,830 transporters and classified 2,673 of these into 113 families and 146 subfamilies. Analysis of gene expression data for 2,611 of these transporters identified 129 that are expressed in an organ-specific manner, including 50 that are nodule specific and 36 specific to mycorrhizal roots. Further analysis uncovered 196 transporters that are induced at least 5-fold during nodule development and 44 in roots during arbuscular mycorrhizal symbiosis. Among the nodule- and mycorrhiza-induced transporter genes are many candidates for known transport activities in these beneficial symbioses. The data presented here are a unique resource for the selection and functional characterization of legume transporters.</abstract><cop>Rockville, MD</cop><pub>American Society of Plant Biologists</pub><pmid>20023147</pmid><doi>10.1104/pp.109.148684</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Plant physiology (Bethesda), 2010-03, Vol.152 (3), p.1716-1730 |
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| source | Jstor Complete Legacy; Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals |
| subjects | Biological and medical sciences Cell membranes Chromosome Mapping Expressed Sequence Tags Fundamental and applied biological sciences. Psychology Gene expression Gene Expression Profiling Gene Expression Regulation, Plant Genes Genes, Plant Genome, Plant Legumes Medicago truncatula - genetics Membrane transport proteins Membrane Transport Proteins - genetics Nodules Oligonucleotide Array Sequence Analysis Plant physiology and development Plant Proteins - genetics Plant Root Nodulation Plant roots Plants PLANTS INTERACTING WITH OTHER ORGANISMS Porters Sequence Analysis, DNA Sequence Analysis, Protein Symbiosis |
| title | Genomic Inventory and Transcriptional Analysis of Medicago truncatula Transporters |
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