CD-HIT Suite: a web server for clustering and comparing biological sequences
CD-HIT is a widely used program for clustering and comparing large biological sequence datasets. In order to further assist the CD-HIT users, we significantly improved this program with more functions and better accuracy, scalability and flexibility. Most importantly, we developed a new web server,...
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| Veröffentlicht in: | Bioinformatics 2010-03, Vol.26 (5), p.680-682 |
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| container_title | Bioinformatics |
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| creator | Huang, Ying Niu, Beifang Gao, Ying Fu, Limin Li, Weizhong |
| description | CD-HIT is a widely used program for clustering and comparing large biological sequence datasets. In order to further assist the CD-HIT users, we significantly improved this program with more functions and better accuracy, scalability and flexibility. Most importantly, we developed a new web server, CD-HIT Suite, for clustering a user-uploaded sequence dataset or comparing it to another dataset at different identity levels. Users can now interactively explore the clusters within web browsers. We also provide downloadable clusters for several public databases (NCBI NR, Swissprot and PDB) at different identity levels. Availability: Free access at http://cd-hit.org Contact: liwz@sdsc.edu Supplementary information: Supplementary data are available at Bioinformatics online. |
| doi_str_mv | 10.1093/bioinformatics/btq003 |
| format | Article |
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| identifier | ISSN: 1367-4803 |
| ispartof | Bioinformatics, 2010-03, Vol.26 (5), p.680-682 |
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| language | eng |
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| source | Oxford Journals Open Access Collection; MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Applications Note Biological and medical sciences Cluster Analysis Computational Biology - methods Databases, Genetic Fundamental and applied biological sciences. Psychology General aspects Internet Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Sequence Alignment Sequence Analysis Software User-Computer Interface |
| title | CD-HIT Suite: a web server for clustering and comparing biological sequences |
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