maize Single myb histone 1 gene, Smh1, belongs to a novel gene family encodes a protein that binds telomere DNA repeats in vitro
We screened maize (Zea mays) cDNAs for sequences similar to the single myb-like DNA-binding domain of known telomeric complex proteins. We identified, cloned, and sequenced five full-length cDNAs representing a novel gene family, and we describe the analysis of one of them, the gene Single myb histo...
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| Veröffentlicht in: | Plant physiology (Bethesda) 2003-11, Vol.133 (3), p.1336-1350 |
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| creator | Marian, C.O Bordoli, S.J Goltz, M Santarella, R.A Jackson, L.P Danilevskaya, O Beckstette, M Meeley, R Bass, H.W |
| description | We screened maize (Zea mays) cDNAs for sequences similar to the single myb-like DNA-binding domain of known telomeric complex proteins. We identified, cloned, and sequenced five full-length cDNAs representing a novel gene family, and we describe the analysis of one of them, the gene Single myb histone 1 (Smh1). The Smh1 gene encodes a small, basic protein with a unique triple motif structure of (a) an N-terminal SANT/myb-like domain of the homeodomain-like superfamily of 3-helical-bundle-fold proteins, (b) a central region with homology to the conserved H1 globular domain found in the linker histones H1/H5, and (c) a coiled-coil domain near the C terminus. The Smh-type genes are plant specific and include a gene family in Arabidopsis and the PcMYB1 gene of parsley (Petroselinum crispum) but are distinct from those (AtTRP1, AtTBP1, and OsRTBP1) recently shown to encode in vitro telomere-repeat DNA-binding activity. The Smh1 gene is expressed in leaf tissue and maps to chromosome 8 (bin 8.05), with a duplicate locus on chromosome 3 (bin 3.09). A recombinant full-length SMH1, rSMH1, was found by band-shift assays to bind double-stranded oligonucleotide probes with at least two internal tandem copies of the maize telomere repeat, TTTAGGG. Point mutations in the telomere repeat residues reduced or abolished the binding, whereas rSMH1 bound nonspecifically to single-stranded DNA probes. The two DNA-binding motifs in SMH proteins may provide a link between sequence recognition and chromatin dynamics and may function at telomeres or other sites in the nucleus. |
| doi_str_mv | 10.1104/pp.103.026856 |
| format | Article |
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We identified, cloned, and sequenced five full-length cDNAs representing a novel gene family, and we describe the analysis of one of them, the gene Single myb histone 1 (Smh1). The Smh1 gene encodes a small, basic protein with a unique triple motif structure of (a) an N-terminal SANT/myb-like domain of the homeodomain-like superfamily of 3-helical-bundle-fold proteins, (b) a central region with homology to the conserved H1 globular domain found in the linker histones H1/H5, and (c) a coiled-coil domain near the C terminus. The Smh-type genes are plant specific and include a gene family in Arabidopsis and the PcMYB1 gene of parsley (Petroselinum crispum) but are distinct from those (AtTRP1, AtTBP1, and OsRTBP1) recently shown to encode in vitro telomere-repeat DNA-binding activity. The Smh1 gene is expressed in leaf tissue and maps to chromosome 8 (bin 8.05), with a duplicate locus on chromosome 3 (bin 3.09). A recombinant full-length SMH1, rSMH1, was found by band-shift assays to bind double-stranded oligonucleotide probes with at least two internal tandem copies of the maize telomere repeat, TTTAGGG. Point mutations in the telomere repeat residues reduced or abolished the binding, whereas rSMH1 bound nonspecifically to single-stranded DNA probes. The two DNA-binding motifs in SMH proteins may provide a link between sequence recognition and chromatin dynamics and may function at telomeres or other sites in the nucleus.</description><identifier>ISSN: 0032-0889</identifier><identifier>EISSN: 1532-2548</identifier><identifier>DOI: 10.1104/pp.103.026856</identifier><identifier>PMID: 14576282</identifier><identifier>CODEN: PPHYA5</identifier><language>eng</language><publisher>Rockville, MD: American Society of Plant Biologists</publisher><subject>Agronomy. Soil science and plant productions ; Amino Acid Sequence ; amino acid sequences ; Arabidopsis - genetics ; Arabidopsis thaliana ; Base Sequence ; binding sites ; Biological and medical sciences ; Chromatin. Chromosome ; Chromosome Mapping ; Classical and quantitative genetics. Population genetics. Molecular genetics ; Cloning, Molecular ; Complementary DNA ; Corn ; DNA ; DNA, Complementary - chemistry ; DNA, Complementary - genetics ; DNA, Plant - chemistry ; DNA, Plant - genetics ; DNA-binding proteins ; DNA-Binding Proteins - metabolism ; Fundamental and applied biological sciences. Psychology ; gene duplication ; Generalities. Genetics. Plant material ; Genes ; Genes, Duplicate ; Genes. Genome ; Genetics and breeding of economic plants ; Genetics, Genomics, and Molecular Evolution ; grain crops ; Histones ; loci ; Molecular and cellular biology ; molecular cloning ; Molecular genetics ; Molecular Sequence Data ; Multigene Family - genetics ; nucleotide sequences ; Oligonucleotide probes ; Oligonucleotides ; Oligonucleotides - metabolism ; Phylogeny ; plant proteins ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Polymerase chain reaction ; Proteins ; repetitive sequences ; sequence analysis ; Sequence Analysis, DNA ; single myb histone 1 gene ; single-stranded DNA ; Telomere-Binding Proteins - genetics ; Telomere-Binding Proteins - metabolism ; Telomeres ; tissue distribution ; Zea mays ; Zea mays - chemistry ; Zea mays - genetics ; Zea mays - metabolism</subject><ispartof>Plant physiology (Bethesda), 2003-11, Vol.133 (3), p.1336-1350</ispartof><rights>Copyright 2003 American Society of Plant Biologists</rights><rights>2004 INIST-CNRS</rights><rights>Copyright © 2003, The American Society for Plant Biologists 2003</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c525t-f775a0b61387a9443c3b72b7a36c46e11ab479625cc11aff09dbdf300b48a3603</citedby><cites>FETCH-LOGICAL-c525t-f775a0b61387a9443c3b72b7a36c46e11ab479625cc11aff09dbdf300b48a3603</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/4281447$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/4281447$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,27901,27902,57992,58225</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=15297635$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14576282$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Marian, C.O</creatorcontrib><creatorcontrib>Bordoli, S.J</creatorcontrib><creatorcontrib>Goltz, M</creatorcontrib><creatorcontrib>Santarella, R.A</creatorcontrib><creatorcontrib>Jackson, L.P</creatorcontrib><creatorcontrib>Danilevskaya, O</creatorcontrib><creatorcontrib>Beckstette, M</creatorcontrib><creatorcontrib>Meeley, R</creatorcontrib><creatorcontrib>Bass, H.W</creatorcontrib><title>maize Single myb histone 1 gene, Smh1, belongs to a novel gene family encodes a protein that binds telomere DNA repeats in vitro</title><title>Plant physiology (Bethesda)</title><addtitle>Plant Physiol</addtitle><description>We screened maize (Zea mays) cDNAs for sequences similar to the single myb-like DNA-binding domain of known telomeric complex proteins. We identified, cloned, and sequenced five full-length cDNAs representing a novel gene family, and we describe the analysis of one of them, the gene Single myb histone 1 (Smh1). The Smh1 gene encodes a small, basic protein with a unique triple motif structure of (a) an N-terminal SANT/myb-like domain of the homeodomain-like superfamily of 3-helical-bundle-fold proteins, (b) a central region with homology to the conserved H1 globular domain found in the linker histones H1/H5, and (c) a coiled-coil domain near the C terminus. The Smh-type genes are plant specific and include a gene family in Arabidopsis and the PcMYB1 gene of parsley (Petroselinum crispum) but are distinct from those (AtTRP1, AtTBP1, and OsRTBP1) recently shown to encode in vitro telomere-repeat DNA-binding activity. The Smh1 gene is expressed in leaf tissue and maps to chromosome 8 (bin 8.05), with a duplicate locus on chromosome 3 (bin 3.09). A recombinant full-length SMH1, rSMH1, was found by band-shift assays to bind double-stranded oligonucleotide probes with at least two internal tandem copies of the maize telomere repeat, TTTAGGG. Point mutations in the telomere repeat residues reduced or abolished the binding, whereas rSMH1 bound nonspecifically to single-stranded DNA probes. The two DNA-binding motifs in SMH proteins may provide a link between sequence recognition and chromatin dynamics and may function at telomeres or other sites in the nucleus.</description><subject>Agronomy. Soil science and plant productions</subject><subject>Amino Acid Sequence</subject><subject>amino acid sequences</subject><subject>Arabidopsis - genetics</subject><subject>Arabidopsis thaliana</subject><subject>Base Sequence</subject><subject>binding sites</subject><subject>Biological and medical sciences</subject><subject>Chromatin. Chromosome</subject><subject>Chromosome Mapping</subject><subject>Classical and quantitative genetics. Population genetics. Molecular genetics</subject><subject>Cloning, Molecular</subject><subject>Complementary DNA</subject><subject>Corn</subject><subject>DNA</subject><subject>DNA, Complementary - chemistry</subject><subject>DNA, Complementary - genetics</subject><subject>DNA, Plant - chemistry</subject><subject>DNA, Plant - genetics</subject><subject>DNA-binding proteins</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gene duplication</subject><subject>Generalities. Genetics. Plant material</subject><subject>Genes</subject><subject>Genes, Duplicate</subject><subject>Genes. Genome</subject><subject>Genetics and breeding of economic plants</subject><subject>Genetics, Genomics, and Molecular Evolution</subject><subject>grain crops</subject><subject>Histones</subject><subject>loci</subject><subject>Molecular and cellular biology</subject><subject>molecular cloning</subject><subject>Molecular genetics</subject><subject>Molecular Sequence Data</subject><subject>Multigene Family - genetics</subject><subject>nucleotide sequences</subject><subject>Oligonucleotide probes</subject><subject>Oligonucleotides</subject><subject>Oligonucleotides - metabolism</subject><subject>Phylogeny</subject><subject>plant proteins</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Polymerase chain reaction</subject><subject>Proteins</subject><subject>repetitive sequences</subject><subject>sequence analysis</subject><subject>Sequence Analysis, DNA</subject><subject>single myb histone 1 gene</subject><subject>single-stranded DNA</subject><subject>Telomere-Binding Proteins - genetics</subject><subject>Telomere-Binding Proteins - metabolism</subject><subject>Telomeres</subject><subject>tissue distribution</subject><subject>Zea mays</subject><subject>Zea mays - chemistry</subject><subject>Zea mays - genetics</subject><subject>Zea mays - metabolism</subject><issn>0032-0889</issn><issn>1532-2548</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkktv1DAUhSMEotPCkh0Cb2DVDH7GzoJFVZ5SBYuha8txbjKuEjvYmZGGVX86Lhm1sGJjX-l859rXx0XxguA1IZi_m6Y1wWyNaaVE9ahYEcFoSQVXj4sVxrnGStUnxWlKNxhjwgh_WpwQLmRFFV0Vt6NxvwBtnO8HQOOhQVuX5uABEdSDh3O0GbfkHDUwBN8nNAdkkA97GP7IqDOjGw4IvA0tpKxNMczgPJq3ZkaN8232ZO8IEdCHbxcowgRmTigjezfH8Kx40pkhwfPjflZcf_r44_JLefX989fLi6vSCirmspNSGNxUhClpas6ZZY2kjTSssrwCQkzDZV1RYW2uuw7XbdN2DOOGq8xgdla8X_pOu2aE1oKfoxn0FN1o4kEH4_S_indb3Ye9porkp8r-t0d_DD93kGY9umRhGIyHsEtaEiaUyOv_QCJrIlQtMlguoI0hpQjd_WUI1nfZ6mnKJdNLtpl_9fcED_QxzAy8OQImWTN00Xjr0gMnaC0rdnfwy4W7yUnHe53nSTmXWX69yJ0J2vQxt7je0Px1MMFKcCrYb8skv4c</recordid><startdate>20031101</startdate><enddate>20031101</enddate><creator>Marian, C.O</creator><creator>Bordoli, S.J</creator><creator>Goltz, M</creator><creator>Santarella, R.A</creator><creator>Jackson, L.P</creator><creator>Danilevskaya, O</creator><creator>Beckstette, M</creator><creator>Meeley, R</creator><creator>Bass, H.W</creator><general>American Society of Plant Biologists</general><general>American Society of Plant Physiologists</general><general>The American Society for Plant Biologists</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20031101</creationdate><title>maize Single myb histone 1 gene, Smh1, belongs to a novel gene family encodes a protein that binds telomere DNA repeats in vitro</title><author>Marian, C.O ; Bordoli, S.J ; Goltz, M ; Santarella, R.A ; Jackson, L.P ; Danilevskaya, O ; Beckstette, M ; Meeley, R ; Bass, H.W</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c525t-f775a0b61387a9443c3b72b7a36c46e11ab479625cc11aff09dbdf300b48a3603</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>Agronomy. Soil science and plant productions</topic><topic>Amino Acid Sequence</topic><topic>amino acid sequences</topic><topic>Arabidopsis - genetics</topic><topic>Arabidopsis thaliana</topic><topic>Base Sequence</topic><topic>binding sites</topic><topic>Biological and medical sciences</topic><topic>Chromatin. Chromosome</topic><topic>Chromosome Mapping</topic><topic>Classical and quantitative genetics. Population genetics. Molecular genetics</topic><topic>Cloning, Molecular</topic><topic>Complementary DNA</topic><topic>Corn</topic><topic>DNA</topic><topic>DNA, Complementary - chemistry</topic><topic>DNA, Complementary - genetics</topic><topic>DNA, Plant - chemistry</topic><topic>DNA, Plant - genetics</topic><topic>DNA-binding proteins</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gene duplication</topic><topic>Generalities. Genetics. Plant material</topic><topic>Genes</topic><topic>Genes, Duplicate</topic><topic>Genes. Genome</topic><topic>Genetics and breeding of economic plants</topic><topic>Genetics, Genomics, and Molecular Evolution</topic><topic>grain crops</topic><topic>Histones</topic><topic>loci</topic><topic>Molecular and cellular biology</topic><topic>molecular cloning</topic><topic>Molecular genetics</topic><topic>Molecular Sequence Data</topic><topic>Multigene Family - genetics</topic><topic>nucleotide sequences</topic><topic>Oligonucleotide probes</topic><topic>Oligonucleotides</topic><topic>Oligonucleotides - metabolism</topic><topic>Phylogeny</topic><topic>plant proteins</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Polymerase chain reaction</topic><topic>Proteins</topic><topic>repetitive sequences</topic><topic>sequence analysis</topic><topic>Sequence Analysis, DNA</topic><topic>single myb histone 1 gene</topic><topic>single-stranded DNA</topic><topic>Telomere-Binding Proteins - genetics</topic><topic>Telomere-Binding Proteins - metabolism</topic><topic>Telomeres</topic><topic>tissue distribution</topic><topic>Zea mays</topic><topic>Zea mays - chemistry</topic><topic>Zea mays - genetics</topic><topic>Zea mays - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Marian, C.O</creatorcontrib><creatorcontrib>Bordoli, S.J</creatorcontrib><creatorcontrib>Goltz, M</creatorcontrib><creatorcontrib>Santarella, R.A</creatorcontrib><creatorcontrib>Jackson, L.P</creatorcontrib><creatorcontrib>Danilevskaya, O</creatorcontrib><creatorcontrib>Beckstette, M</creatorcontrib><creatorcontrib>Meeley, R</creatorcontrib><creatorcontrib>Bass, H.W</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Plant physiology (Bethesda)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Marian, C.O</au><au>Bordoli, S.J</au><au>Goltz, M</au><au>Santarella, R.A</au><au>Jackson, L.P</au><au>Danilevskaya, O</au><au>Beckstette, M</au><au>Meeley, R</au><au>Bass, H.W</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>maize Single myb histone 1 gene, Smh1, belongs to a novel gene family encodes a protein that binds telomere DNA repeats in vitro</atitle><jtitle>Plant physiology (Bethesda)</jtitle><addtitle>Plant Physiol</addtitle><date>2003-11-01</date><risdate>2003</risdate><volume>133</volume><issue>3</issue><spage>1336</spage><epage>1350</epage><pages>1336-1350</pages><issn>0032-0889</issn><eissn>1532-2548</eissn><coden>PPHYA5</coden><abstract>We screened maize (Zea mays) cDNAs for sequences similar to the single myb-like DNA-binding domain of known telomeric complex proteins. We identified, cloned, and sequenced five full-length cDNAs representing a novel gene family, and we describe the analysis of one of them, the gene Single myb histone 1 (Smh1). The Smh1 gene encodes a small, basic protein with a unique triple motif structure of (a) an N-terminal SANT/myb-like domain of the homeodomain-like superfamily of 3-helical-bundle-fold proteins, (b) a central region with homology to the conserved H1 globular domain found in the linker histones H1/H5, and (c) a coiled-coil domain near the C terminus. The Smh-type genes are plant specific and include a gene family in Arabidopsis and the PcMYB1 gene of parsley (Petroselinum crispum) but are distinct from those (AtTRP1, AtTBP1, and OsRTBP1) recently shown to encode in vitro telomere-repeat DNA-binding activity. The Smh1 gene is expressed in leaf tissue and maps to chromosome 8 (bin 8.05), with a duplicate locus on chromosome 3 (bin 3.09). A recombinant full-length SMH1, rSMH1, was found by band-shift assays to bind double-stranded oligonucleotide probes with at least two internal tandem copies of the maize telomere repeat, TTTAGGG. Point mutations in the telomere repeat residues reduced or abolished the binding, whereas rSMH1 bound nonspecifically to single-stranded DNA probes. The two DNA-binding motifs in SMH proteins may provide a link between sequence recognition and chromatin dynamics and may function at telomeres or other sites in the nucleus.</abstract><cop>Rockville, MD</cop><pub>American Society of Plant Biologists</pub><pmid>14576282</pmid><doi>10.1104/pp.103.026856</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Plant physiology (Bethesda), 2003-11, Vol.133 (3), p.1336-1350 |
| issn | 0032-0889 1532-2548 |
| language | eng |
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| source | Jstor Complete Legacy; Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals |
| subjects | Agronomy. Soil science and plant productions Amino Acid Sequence amino acid sequences Arabidopsis - genetics Arabidopsis thaliana Base Sequence binding sites Biological and medical sciences Chromatin. Chromosome Chromosome Mapping Classical and quantitative genetics. Population genetics. Molecular genetics Cloning, Molecular Complementary DNA Corn DNA DNA, Complementary - chemistry DNA, Complementary - genetics DNA, Plant - chemistry DNA, Plant - genetics DNA-binding proteins DNA-Binding Proteins - metabolism Fundamental and applied biological sciences. Psychology gene duplication Generalities. Genetics. Plant material Genes Genes, Duplicate Genes. Genome Genetics and breeding of economic plants Genetics, Genomics, and Molecular Evolution grain crops Histones loci Molecular and cellular biology molecular cloning Molecular genetics Molecular Sequence Data Multigene Family - genetics nucleotide sequences Oligonucleotide probes Oligonucleotides Oligonucleotides - metabolism Phylogeny plant proteins Plant Proteins - genetics Plant Proteins - metabolism Polymerase chain reaction Proteins repetitive sequences sequence analysis Sequence Analysis, DNA single myb histone 1 gene single-stranded DNA Telomere-Binding Proteins - genetics Telomere-Binding Proteins - metabolism Telomeres tissue distribution Zea mays Zea mays - chemistry Zea mays - genetics Zea mays - metabolism |
| title | maize Single myb histone 1 gene, Smh1, belongs to a novel gene family encodes a protein that binds telomere DNA repeats in vitro |
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