Saccharomyces Genome Database provides mutant phenotype data
The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. The information in SGD includes functional annotations, mapping and seq...
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| Veröffentlicht in: | Nucleic acids research 2010-01, Vol.38 (Database issue), p.D433-D436 |
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| container_end_page | D436 |
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| container_issue | Database issue |
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| container_title | Nucleic acids research |
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| creator | Engel, Stacia R Balakrishnan, Rama Binkley, Gail Christie, Karen R Costanzo, Maria C Dwight, Selina S Fisk, Dianna G Hirschman, Jodi E Hitz, Benjamin C Hong, Eurie L Krieger, Cynthia J Livstone, Michael S Miyasato, Stuart R Nash, Robert Oughtred, Rose Park, Julie Skrzypek, Marek S Weng, Shuai Wong, Edith D Dolinski, Kara Botstein, David Cherry, J. Michael |
| description | The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. The information in SGD includes functional annotations, mapping and sequence information, protein domains and structure, expression data, mutant phenotypes, physical and genetic interactions and the primary literature from which these data are derived. Here we describe how published phenotypes and genetic interaction data are annotated and displayed in SGD. |
| doi_str_mv | 10.1093/nar/gkp917 |
| format | Article |
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Michael</creator><creatorcontrib>Engel, Stacia R ; Balakrishnan, Rama ; Binkley, Gail ; Christie, Karen R ; Costanzo, Maria C ; Dwight, Selina S ; Fisk, Dianna G ; Hirschman, Jodi E ; Hitz, Benjamin C ; Hong, Eurie L ; Krieger, Cynthia J ; Livstone, Michael S ; Miyasato, Stuart R ; Nash, Robert ; Oughtred, Rose ; Park, Julie ; Skrzypek, Marek S ; Weng, Shuai ; Wong, Edith D ; Dolinski, Kara ; Botstein, David ; Cherry, J. Michael</creatorcontrib><description>The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. The information in SGD includes functional annotations, mapping and sequence information, protein domains and structure, expression data, mutant phenotypes, physical and genetic interactions and the primary literature from which these data are derived. Here we describe how published phenotypes and genetic interaction data are annotated and displayed in SGD.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkp917</identifier><identifier>PMID: 19906697</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Computational Biology - methods ; Computational Biology - trends ; Databases, Genetic ; Databases, Nucleic Acid ; Databases, Protein ; DNA, Fungal ; Genes, Fungal ; Genome, Fungal ; Information Storage and Retrieval - methods ; Internet ; Mutation ; Phenotype ; Protein Structure, Tertiary ; Saccharomyces cerevisiae ; Saccharomyces cerevisiae - genetics ; Software</subject><ispartof>Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D433-D436</ispartof><rights>The Author(s) 2009. Published by Oxford University Press. 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c363t-3c30da26e9845cb5bc8b590fe697a3711f8ef5e062db0969a9a5ef63d47e977f3</citedby><cites>FETCH-LOGICAL-c363t-3c30da26e9845cb5bc8b590fe697a3711f8ef5e062db0969a9a5ef63d47e977f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808950/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808950/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19906697$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Engel, Stacia R</creatorcontrib><creatorcontrib>Balakrishnan, Rama</creatorcontrib><creatorcontrib>Binkley, Gail</creatorcontrib><creatorcontrib>Christie, Karen R</creatorcontrib><creatorcontrib>Costanzo, Maria C</creatorcontrib><creatorcontrib>Dwight, Selina S</creatorcontrib><creatorcontrib>Fisk, Dianna G</creatorcontrib><creatorcontrib>Hirschman, Jodi E</creatorcontrib><creatorcontrib>Hitz, Benjamin C</creatorcontrib><creatorcontrib>Hong, Eurie L</creatorcontrib><creatorcontrib>Krieger, Cynthia J</creatorcontrib><creatorcontrib>Livstone, Michael S</creatorcontrib><creatorcontrib>Miyasato, Stuart R</creatorcontrib><creatorcontrib>Nash, Robert</creatorcontrib><creatorcontrib>Oughtred, Rose</creatorcontrib><creatorcontrib>Park, Julie</creatorcontrib><creatorcontrib>Skrzypek, Marek S</creatorcontrib><creatorcontrib>Weng, Shuai</creatorcontrib><creatorcontrib>Wong, Edith D</creatorcontrib><creatorcontrib>Dolinski, Kara</creatorcontrib><creatorcontrib>Botstein, David</creatorcontrib><creatorcontrib>Cherry, J. Michael</creatorcontrib><title>Saccharomyces Genome Database provides mutant phenotype data</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. The information in SGD includes functional annotations, mapping and sequence information, protein domains and structure, expression data, mutant phenotypes, physical and genetic interactions and the primary literature from which these data are derived. Here we describe how published phenotypes and genetic interaction data are annotated and displayed in SGD.</description><subject>Computational Biology - methods</subject><subject>Computational Biology - trends</subject><subject>Databases, Genetic</subject><subject>Databases, Nucleic Acid</subject><subject>Databases, Protein</subject><subject>DNA, Fungal</subject><subject>Genes, Fungal</subject><subject>Genome, Fungal</subject><subject>Information Storage and Retrieval - methods</subject><subject>Internet</subject><subject>Mutation</subject><subject>Phenotype</subject><subject>Protein Structure, Tertiary</subject><subject>Saccharomyces cerevisiae</subject><subject>Saccharomyces cerevisiae - genetics</subject><subject>Software</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0U1r3DAQBmBRWppt0kt-QOpbIeBkZH1ZUAIlaZNAIIc0ZzGWx7tu15YreQP776uwS5uecprDPLzM8DJ2zOGMgxXnI8bz5a_JcvOGLbjQVSmtrt6yBQhQJQdZH7APKf0E4JIr-Z4dcGtBa2sW7MsDer_CGIatp1Rc0xgGKq5wxgYTFVMMT32bF8NmxnEuplUG83aios3kiL3rcJ3o434essfv335c3pR399e3l1_vSi-0mEvhBbRYabK1VL5Rja8bZaGjfAEKw3lXU6cIdNU2YLVFi4o6LVppyBrTiUN2scudNs1Aradxjrh2U-wHjFsXsHf_b8Z-5ZbhyVU11FZBDvi8D4jh94bS7IY-eVqvcaSwSc5IDbXK-HUpZAVSC5nl6U76GFKK1P29h4N77sXlXtyul4xPXn7wj-6LyODTDnQYHC5jn9zjQwVcADfcaC7EH6gSlDA</recordid><startdate>20100101</startdate><enddate>20100101</enddate><creator>Engel, Stacia R</creator><creator>Balakrishnan, Rama</creator><creator>Binkley, Gail</creator><creator>Christie, Karen R</creator><creator>Costanzo, Maria C</creator><creator>Dwight, Selina S</creator><creator>Fisk, Dianna G</creator><creator>Hirschman, Jodi E</creator><creator>Hitz, Benjamin C</creator><creator>Hong, Eurie L</creator><creator>Krieger, Cynthia J</creator><creator>Livstone, Michael S</creator><creator>Miyasato, Stuart R</creator><creator>Nash, Robert</creator><creator>Oughtred, Rose</creator><creator>Park, Julie</creator><creator>Skrzypek, Marek S</creator><creator>Weng, Shuai</creator><creator>Wong, Edith D</creator><creator>Dolinski, Kara</creator><creator>Botstein, David</creator><creator>Cherry, J. Michael</creator><general>Oxford University Press</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>5PM</scope></search><sort><creationdate>20100101</creationdate><title>Saccharomyces Genome Database provides mutant phenotype data</title><author>Engel, Stacia R ; Balakrishnan, Rama ; Binkley, Gail ; Christie, Karen R ; Costanzo, Maria C ; Dwight, Selina S ; Fisk, Dianna G ; Hirschman, Jodi E ; Hitz, Benjamin C ; Hong, Eurie L ; Krieger, Cynthia J ; Livstone, Michael S ; Miyasato, Stuart R ; Nash, Robert ; Oughtred, Rose ; Park, Julie ; Skrzypek, Marek S ; Weng, Shuai ; Wong, Edith D ; Dolinski, Kara ; Botstein, David ; Cherry, J. 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Michael</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Engel, Stacia R</au><au>Balakrishnan, Rama</au><au>Binkley, Gail</au><au>Christie, Karen R</au><au>Costanzo, Maria C</au><au>Dwight, Selina S</au><au>Fisk, Dianna G</au><au>Hirschman, Jodi E</au><au>Hitz, Benjamin C</au><au>Hong, Eurie L</au><au>Krieger, Cynthia J</au><au>Livstone, Michael S</au><au>Miyasato, Stuart R</au><au>Nash, Robert</au><au>Oughtred, Rose</au><au>Park, Julie</au><au>Skrzypek, Marek S</au><au>Weng, Shuai</au><au>Wong, Edith D</au><au>Dolinski, Kara</au><au>Botstein, David</au><au>Cherry, J. Michael</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Saccharomyces Genome Database provides mutant phenotype data</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2010-01-01</date><risdate>2010</risdate><volume>38</volume><issue>Database issue</issue><spage>D433</spage><epage>D436</epage><pages>D433-D436</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><abstract>The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org) is a scientific database for the molecular biology and genetics of the yeast Saccharomyces cerevisiae, which is commonly known as baker's or budding yeast. The information in SGD includes functional annotations, mapping and sequence information, protein domains and structure, expression data, mutant phenotypes, physical and genetic interactions and the primary literature from which these data are derived. Here we describe how published phenotypes and genetic interaction data are annotated and displayed in SGD.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>19906697</pmid><doi>10.1093/nar/gkp917</doi><oa>free_for_read</oa></addata></record> |
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| ispartof | Nucleic acids research, 2010-01, Vol.38 (Database issue), p.D433-D436 |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Computational Biology - methods Computational Biology - trends Databases, Genetic Databases, Nucleic Acid Databases, Protein DNA, Fungal Genes, Fungal Genome, Fungal Information Storage and Retrieval - methods Internet Mutation Phenotype Protein Structure, Tertiary Saccharomyces cerevisiae Saccharomyces cerevisiae - genetics Software |
| title | Saccharomyces Genome Database provides mutant phenotype data |
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