Metal-controlled interdomain cooperativity in parvalbumins
Abstract Conformational behavior of five homologous proteins, parvalbumins (PAs) from northern pike (α and β isoforms), Baltic cod, and rat (α and β isoforms), was studied by scanning calorimetry, circular dichroism, and bis-ANS fluorescence. The mechanism of the temperature-induced denaturation of...
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description | Abstract Conformational behavior of five homologous proteins, parvalbumins (PAs) from northern pike (α and β isoforms), Baltic cod, and rat (α and β isoforms), was studied by scanning calorimetry, circular dichroism, and bis-ANS fluorescence. The mechanism of the temperature-induced denaturation of these proteins depends dramatically on both the peculiarities of their amino acid sequences and on their interaction with metal ions. For example, the pike α-PA melting can be described by two successive two-state transitions with mid-temperatures of 90 and 120 °C, suggesting the presence of two thermodynamic domains. The intermediate state populated at the end of the first transition was shown to bind Ca2+ ions, and was characterized by the largely preserved secondary structure and increased solvent exposure of hydrophobic groups. Mg2+ - and Na+ -loaded forms of pike α-PA demonstrated a single two-state transition. Therefore, the mechanism of the PA thermal denaturation is controlled by metal binding. It ranged from the absence of detectable first-order transition (apo-form of pike PA), to the two-state transition (e.g., Mg2+ - and Na+ -loaded forms of pike α-PA), to the more complex mechanisms (Ca2+ -loaded PAs) involving at least one partially folded intermediate. Analysis of isolated cavities in the protein structures revealed that the interface between the CD and EF subdomains of Ca2+ -loaded pike α-PA is much more loosely packed compared with PAs manifesting single heat-sorption peak. The impairment of interactions between CD and EF subdomains may cause a loss of structural cooperativity and appearance of two separate thermodynamic domains. One more peculiar feature of pike α-PA is that depending on its interactions with metal ions, it can be an intrinsically disordered protein (apo-form), an ordered protein of mesophilic (Na+ -bound state), thermophilic (Mg2+ -form), or even of the hyperthermophilic origin (Ca2+ -form). |
doi_str_mv | 10.1016/j.ceca.2009.07.001 |
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The mechanism of the temperature-induced denaturation of these proteins depends dramatically on both the peculiarities of their amino acid sequences and on their interaction with metal ions. For example, the pike α-PA melting can be described by two successive two-state transitions with mid-temperatures of 90 and 120 °C, suggesting the presence of two thermodynamic domains. The intermediate state populated at the end of the first transition was shown to bind Ca2+ ions, and was characterized by the largely preserved secondary structure and increased solvent exposure of hydrophobic groups. Mg2+ - and Na+ -loaded forms of pike α-PA demonstrated a single two-state transition. Therefore, the mechanism of the PA thermal denaturation is controlled by metal binding. It ranged from the absence of detectable first-order transition (apo-form of pike PA), to the two-state transition (e.g., Mg2+ - and Na+ -loaded forms of pike α-PA), to the more complex mechanisms (Ca2+ -loaded PAs) involving at least one partially folded intermediate. Analysis of isolated cavities in the protein structures revealed that the interface between the CD and EF subdomains of Ca2+ -loaded pike α-PA is much more loosely packed compared with PAs manifesting single heat-sorption peak. The impairment of interactions between CD and EF subdomains may cause a loss of structural cooperativity and appearance of two separate thermodynamic domains. One more peculiar feature of pike α-PA is that depending on its interactions with metal ions, it can be an intrinsically disordered protein (apo-form), an ordered protein of mesophilic (Na+ -bound state), thermophilic (Mg2+ -form), or even of the hyperthermophilic origin (Ca2+ -form).</description><identifier>ISSN: 0143-4160</identifier><identifier>EISSN: 1532-1991</identifier><identifier>DOI: 10.1016/j.ceca.2009.07.001</identifier><identifier>PMID: 19651438</identifier><language>eng</language><publisher>Netherlands: Elsevier India Pvt Ltd</publisher><subject>Advanced Basic Science ; Allergen ; Animals ; Calcium - metabolism ; Calorimetry ; Circular Dichroism ; Cooperativity ; EF-hand ; Hyperthermophile ; Intermediate ; Metal binding ; Metals - metabolism ; Parvalbumins - chemistry ; Parvalbumins - metabolism ; Protein Binding ; Protein cavities ; Protein Denaturation ; Protein intrinsic disorder ; Protein Structure, Tertiary ; Protein unfolding ; Rats ; Recombinant Proteins - chemistry ; Recombinant Proteins - metabolism ; Spectrometry, Fluorescence ; Structural domain ; Thermodynamic domain ; Thermodynamics ; Transition Temperature</subject><ispartof>Cell calcium (Edinburgh), 2009-09, Vol.46 (3), p.163-175</ispartof><rights>Elsevier Ltd</rights><rights>2009 Elsevier Ltd</rights><rights>2009 Elsevier Ltd. All rights reserved. 2009</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c539t-d8ff9f22de550dfdd9c612b52c6f6d524278bb231fe273583c8a3d81ba13f0b63</citedby><cites>FETCH-LOGICAL-c539t-d8ff9f22de550dfdd9c612b52c6f6d524278bb231fe273583c8a3d81ba13f0b63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.ceca.2009.07.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3548,27923,27924,45994</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19651438$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Permyakov, Sergei E</creatorcontrib><creatorcontrib>Bakunts, Anush G</creatorcontrib><creatorcontrib>Permyakova, Maria E</creatorcontrib><creatorcontrib>Denesyuk, Alexander I</creatorcontrib><creatorcontrib>Uversky, Vladimir N</creatorcontrib><creatorcontrib>Permyakov, Eugene A</creatorcontrib><title>Metal-controlled interdomain cooperativity in parvalbumins</title><title>Cell calcium (Edinburgh)</title><addtitle>Cell Calcium</addtitle><description>Abstract Conformational behavior of five homologous proteins, parvalbumins (PAs) from northern pike (α and β isoforms), Baltic cod, and rat (α and β isoforms), was studied by scanning calorimetry, circular dichroism, and bis-ANS fluorescence. The mechanism of the temperature-induced denaturation of these proteins depends dramatically on both the peculiarities of their amino acid sequences and on their interaction with metal ions. For example, the pike α-PA melting can be described by two successive two-state transitions with mid-temperatures of 90 and 120 °C, suggesting the presence of two thermodynamic domains. The intermediate state populated at the end of the first transition was shown to bind Ca2+ ions, and was characterized by the largely preserved secondary structure and increased solvent exposure of hydrophobic groups. Mg2+ - and Na+ -loaded forms of pike α-PA demonstrated a single two-state transition. Therefore, the mechanism of the PA thermal denaturation is controlled by metal binding. It ranged from the absence of detectable first-order transition (apo-form of pike PA), to the two-state transition (e.g., Mg2+ - and Na+ -loaded forms of pike α-PA), to the more complex mechanisms (Ca2+ -loaded PAs) involving at least one partially folded intermediate. Analysis of isolated cavities in the protein structures revealed that the interface between the CD and EF subdomains of Ca2+ -loaded pike α-PA is much more loosely packed compared with PAs manifesting single heat-sorption peak. The impairment of interactions between CD and EF subdomains may cause a loss of structural cooperativity and appearance of two separate thermodynamic domains. One more peculiar feature of pike α-PA is that depending on its interactions with metal ions, it can be an intrinsically disordered protein (apo-form), an ordered protein of mesophilic (Na+ -bound state), thermophilic (Mg2+ -form), or even of the hyperthermophilic origin (Ca2+ -form).</description><subject>Advanced Basic Science</subject><subject>Allergen</subject><subject>Animals</subject><subject>Calcium - metabolism</subject><subject>Calorimetry</subject><subject>Circular Dichroism</subject><subject>Cooperativity</subject><subject>EF-hand</subject><subject>Hyperthermophile</subject><subject>Intermediate</subject><subject>Metal binding</subject><subject>Metals - metabolism</subject><subject>Parvalbumins - chemistry</subject><subject>Parvalbumins - metabolism</subject><subject>Protein Binding</subject><subject>Protein cavities</subject><subject>Protein Denaturation</subject><subject>Protein intrinsic disorder</subject><subject>Protein Structure, Tertiary</subject><subject>Protein unfolding</subject><subject>Rats</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - metabolism</subject><subject>Spectrometry, Fluorescence</subject><subject>Structural domain</subject><subject>Thermodynamic domain</subject><subject>Thermodynamics</subject><subject>Transition Temperature</subject><issn>0143-4160</issn><issn>1532-1991</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFks2O1DAQhC0EYoeFF-CA5sQtwW3HjoPQSmgFu0iLOABny7E74MGJBzsZad4eRzPi7wAnH-qrUrurCXkKtAYK8sWutmhNzSjtatrWlMI9sgHBWQVdB_fJhkLDqwYkvSCPct7RAvIWHpIL6KQomtqQl-9xNqGycZpTDAHd1k8zJhdH46etjXGPycz-4OdjUbZ7kw4m9Mvop_yYPBhMyPjk_F6Sz2_ffLq-re4-3Ly7fn1XWcG7uXJqGLqBMYdCUDc411kJrBfMykE6wRrWqr5nHAZkLReKW2W4U9Ab4APtJb8kV6fc_dKP6CyWUU3Q--RHk446Gq__VCb_VX-JB81a0bSSlYDn54AUvy-YZz36bDEEM2FcspatBMWU-i_IaEs7ELSA7ATaFHNOOPycBqheu9E7vXaj1240bXXpppie_f6PX5ZzGQV4dQKwbPPgMelsPU4WnU9oZ-2i_3f-1V92G_zkrQnf8Ih5F5c0lZ406Mw01R_X61iPg3bFDY3kPwAsA7Zm</recordid><startdate>20090901</startdate><enddate>20090901</enddate><creator>Permyakov, Sergei E</creator><creator>Bakunts, Anush G</creator><creator>Permyakova, Maria E</creator><creator>Denesyuk, Alexander I</creator><creator>Uversky, Vladimir N</creator><creator>Permyakov, Eugene A</creator><general>Elsevier India Pvt Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20090901</creationdate><title>Metal-controlled interdomain cooperativity in parvalbumins</title><author>Permyakov, Sergei E ; Bakunts, Anush G ; Permyakova, Maria E ; Denesyuk, Alexander I ; Uversky, Vladimir N ; Permyakov, Eugene A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c539t-d8ff9f22de550dfdd9c612b52c6f6d524278bb231fe273583c8a3d81ba13f0b63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Advanced Basic Science</topic><topic>Allergen</topic><topic>Animals</topic><topic>Calcium - metabolism</topic><topic>Calorimetry</topic><topic>Circular Dichroism</topic><topic>Cooperativity</topic><topic>EF-hand</topic><topic>Hyperthermophile</topic><topic>Intermediate</topic><topic>Metal binding</topic><topic>Metals - metabolism</topic><topic>Parvalbumins - chemistry</topic><topic>Parvalbumins - metabolism</topic><topic>Protein Binding</topic><topic>Protein cavities</topic><topic>Protein Denaturation</topic><topic>Protein intrinsic disorder</topic><topic>Protein Structure, Tertiary</topic><topic>Protein unfolding</topic><topic>Rats</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - metabolism</topic><topic>Spectrometry, Fluorescence</topic><topic>Structural domain</topic><topic>Thermodynamic domain</topic><topic>Thermodynamics</topic><topic>Transition Temperature</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Permyakov, Sergei E</creatorcontrib><creatorcontrib>Bakunts, Anush G</creatorcontrib><creatorcontrib>Permyakova, Maria E</creatorcontrib><creatorcontrib>Denesyuk, Alexander I</creatorcontrib><creatorcontrib>Uversky, Vladimir N</creatorcontrib><creatorcontrib>Permyakov, Eugene A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cell calcium (Edinburgh)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Permyakov, Sergei E</au><au>Bakunts, Anush G</au><au>Permyakova, Maria E</au><au>Denesyuk, Alexander I</au><au>Uversky, Vladimir N</au><au>Permyakov, Eugene A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Metal-controlled interdomain cooperativity in parvalbumins</atitle><jtitle>Cell calcium (Edinburgh)</jtitle><addtitle>Cell Calcium</addtitle><date>2009-09-01</date><risdate>2009</risdate><volume>46</volume><issue>3</issue><spage>163</spage><epage>175</epage><pages>163-175</pages><issn>0143-4160</issn><eissn>1532-1991</eissn><abstract>Abstract Conformational behavior of five homologous proteins, parvalbumins (PAs) from northern pike (α and β isoforms), Baltic cod, and rat (α and β isoforms), was studied by scanning calorimetry, circular dichroism, and bis-ANS fluorescence. The mechanism of the temperature-induced denaturation of these proteins depends dramatically on both the peculiarities of their amino acid sequences and on their interaction with metal ions. For example, the pike α-PA melting can be described by two successive two-state transitions with mid-temperatures of 90 and 120 °C, suggesting the presence of two thermodynamic domains. The intermediate state populated at the end of the first transition was shown to bind Ca2+ ions, and was characterized by the largely preserved secondary structure and increased solvent exposure of hydrophobic groups. Mg2+ - and Na+ -loaded forms of pike α-PA demonstrated a single two-state transition. Therefore, the mechanism of the PA thermal denaturation is controlled by metal binding. It ranged from the absence of detectable first-order transition (apo-form of pike PA), to the two-state transition (e.g., Mg2+ - and Na+ -loaded forms of pike α-PA), to the more complex mechanisms (Ca2+ -loaded PAs) involving at least one partially folded intermediate. Analysis of isolated cavities in the protein structures revealed that the interface between the CD and EF subdomains of Ca2+ -loaded pike α-PA is much more loosely packed compared with PAs manifesting single heat-sorption peak. The impairment of interactions between CD and EF subdomains may cause a loss of structural cooperativity and appearance of two separate thermodynamic domains. One more peculiar feature of pike α-PA is that depending on its interactions with metal ions, it can be an intrinsically disordered protein (apo-form), an ordered protein of mesophilic (Na+ -bound state), thermophilic (Mg2+ -form), or even of the hyperthermophilic origin (Ca2+ -form).</abstract><cop>Netherlands</cop><pub>Elsevier India Pvt Ltd</pub><pmid>19651438</pmid><doi>10.1016/j.ceca.2009.07.001</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Advanced Basic Science Allergen Animals Calcium - metabolism Calorimetry Circular Dichroism Cooperativity EF-hand Hyperthermophile Intermediate Metal binding Metals - metabolism Parvalbumins - chemistry Parvalbumins - metabolism Protein Binding Protein cavities Protein Denaturation Protein intrinsic disorder Protein Structure, Tertiary Protein unfolding Rats Recombinant Proteins - chemistry Recombinant Proteins - metabolism Spectrometry, Fluorescence Structural domain Thermodynamic domain Thermodynamics Transition Temperature |
title | Metal-controlled interdomain cooperativity in parvalbumins |
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