The Sequence Alignment/Map format and SAMtools
The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the f...
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| Veröffentlicht in: | Bioinformatics 2009-08, Vol.25 (16), p.2078-2079 |
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| container_title | Bioinformatics |
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| creator | Li, Heng Handsaker, Bob Wysoker, Alec Fennell, Tim Ruan, Jue Homer, Nils Marth, Gabor Abecasis, Goncalo Durbin, Richard |
| description | The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms. It is flexible in style, compact in size, efficient in random access and is the format in which alignments from the 1000 Genomes Project are released. SAMtools implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments. Availability: http://samtools.sourceforge.net Contact: rd@sanger.ac.uk |
| doi_str_mv | 10.1093/bioinformatics/btp352 |
| format | Article |
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| language | eng |
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| source | Oxford Journals Open Access Collection; MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Alma/SFX Local Collection |
| subjects | Algorithms Applications Note Base Sequence Biological and medical sciences Computational Biology - methods Fundamental and applied biological sciences. Psychology General aspects Genome Genomics Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Molecular Sequence Data Sequence Alignment - methods Sequence Analysis, DNA - methods Software |
| title | The Sequence Alignment/Map format and SAMtools |
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