Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans
Regions on chromosome 8q24 harbor susceptibility alleles for multiple cancers including colorectal (region 3) and prostate cancer (regions 1–4). The objectives of the present study were (i) to test whether single-nucleotide polymorphisms (SNPs) in region 4 are associated with colorectal cancer (CRC)...
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Veröffentlicht in: | Carcinogenesis (New York) 2009-08, Vol.30 (8), p.1353-1357 |
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description | Regions on chromosome 8q24 harbor susceptibility alleles for multiple cancers including colorectal (region 3) and prostate cancer (regions 1–4). The objectives of the present study were (i) to test whether single-nucleotide polymorphisms (SNPs) in region 4 are associated with colorectal cancer (CRC) in European or African Americans; (ii) to test whether 8q24 SNPs previously shown to be associated with colorectal and prostate cancer also show association in our multiethnic series and (iii) to test for association between 100 ancestry informative markers (AIMs) and CRC in both the African American and European American cohorts. In total, we genotyped nine markers on 8q24 and 100 unlinked AIMs in 569 CRC cases and 439 controls (490 European Americans and 518 African Americans) obtained retrospectively from a hospital-based sample. We found rs7008482 in 8q24 region 4 to be significantly associated with CRC in European Americans (P = 0.03). Also in region 4, we found that a second SNP, rs16900305, trended toward association with CRC in African Americans. The rs6983267 in region 3, previously implicated in CRC risk, trended toward association with disease in European Americans but not in African Americans. Finally, none of the 100 AIMs tested for association reached statistical significance after correction for multiple hypothesis testing. In summary, these results are evidence that 8q24 region 4 contains novel CRC-associated alleles in European and African Americans. |
doi_str_mv | 10.1093/carcin/bgp123 |
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The objectives of the present study were (i) to test whether single-nucleotide polymorphisms (SNPs) in region 4 are associated with colorectal cancer (CRC) in European or African Americans; (ii) to test whether 8q24 SNPs previously shown to be associated with colorectal and prostate cancer also show association in our multiethnic series and (iii) to test for association between 100 ancestry informative markers (AIMs) and CRC in both the African American and European American cohorts. In total, we genotyped nine markers on 8q24 and 100 unlinked AIMs in 569 CRC cases and 439 controls (490 European Americans and 518 African Americans) obtained retrospectively from a hospital-based sample. We found rs7008482 in 8q24 region 4 to be significantly associated with CRC in European Americans (P = 0.03). Also in region 4, we found that a second SNP, rs16900305, trended toward association with CRC in African Americans. The rs6983267 in region 3, previously implicated in CRC risk, trended toward association with disease in European Americans but not in African Americans. Finally, none of the 100 AIMs tested for association reached statistical significance after correction for multiple hypothesis testing. In summary, these results are evidence that 8q24 region 4 contains novel CRC-associated alleles in European and African Americans.</description><identifier>ISSN: 0143-3334</identifier><identifier>ISSN: 1460-2180</identifier><identifier>EISSN: 1460-2180</identifier><identifier>DOI: 10.1093/carcin/bgp123</identifier><identifier>PMID: 19520795</identifier><identifier>CODEN: CRNGDP</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Aged ; Biological and medical sciences ; Black or African American ; Black People - genetics ; Carcinogenesis, carcinogens and anticarcinogens ; Case-Control Studies ; Chromosomes, Human, Pair 8 - genetics ; Colorectal Neoplasms - epidemiology ; Colorectal Neoplasms - genetics ; Colorectal Neoplasms - pathology ; DNA, Neoplasm - genetics ; Female ; Gastroenterology. Liver. Pancreas. Abdomen ; Gene Frequency ; Genome-Wide Association Study ; Humans ; Male ; Medical sciences ; Middle Aged ; Molecular Epidemiology ; Polymorphism, Single Nucleotide - genetics ; Prostatic Neoplasms - epidemiology ; Prostatic Neoplasms - genetics ; Prostatic Neoplasms - pathology ; Retrospective Studies ; Stomach. Duodenum. Small intestine. Colon. Rectum. Anus ; Tumors ; White People - genetics</subject><ispartof>Carcinogenesis (New York), 2009-08, Vol.30 (8), p.1353-1357</ispartof><rights>The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2009</rights><rights>2009 INIST-CNRS</rights><rights>The Author 2009. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c544t-825615cb2721ce8ef46ea80223c31636af5a2f4e10a0d9b29ff9b3ea56318fc23</citedby><cites>FETCH-LOGICAL-c544t-825615cb2721ce8ef46ea80223c31636af5a2f4e10a0d9b29ff9b3ea56318fc23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,1578,27903,27904</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=21798655$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/19520795$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kupfer, Sonia S.</creatorcontrib><creatorcontrib>Torres, Jada Benn</creatorcontrib><creatorcontrib>Hooker, Stanley</creatorcontrib><creatorcontrib>Anderson, Jeffrey R.</creatorcontrib><creatorcontrib>Skol, Andrew D.</creatorcontrib><creatorcontrib>Ellis, Nathan A.</creatorcontrib><creatorcontrib>Kittles, Rick A.</creatorcontrib><title>Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans</title><title>Carcinogenesis (New York)</title><addtitle>Carcinogenesis</addtitle><description>Regions on chromosome 8q24 harbor susceptibility alleles for multiple cancers including colorectal (region 3) and prostate cancer (regions 1–4). The objectives of the present study were (i) to test whether single-nucleotide polymorphisms (SNPs) in region 4 are associated with colorectal cancer (CRC) in European or African Americans; (ii) to test whether 8q24 SNPs previously shown to be associated with colorectal and prostate cancer also show association in our multiethnic series and (iii) to test for association between 100 ancestry informative markers (AIMs) and CRC in both the African American and European American cohorts. In total, we genotyped nine markers on 8q24 and 100 unlinked AIMs in 569 CRC cases and 439 controls (490 European Americans and 518 African Americans) obtained retrospectively from a hospital-based sample. We found rs7008482 in 8q24 region 4 to be significantly associated with CRC in European Americans (P = 0.03). Also in region 4, we found that a second SNP, rs16900305, trended toward association with CRC in African Americans. The rs6983267 in region 3, previously implicated in CRC risk, trended toward association with disease in European Americans but not in African Americans. Finally, none of the 100 AIMs tested for association reached statistical significance after correction for multiple hypothesis testing. In summary, these results are evidence that 8q24 region 4 contains novel CRC-associated alleles in European and African Americans.</description><subject>Aged</subject><subject>Biological and medical sciences</subject><subject>Black or African American</subject><subject>Black People - genetics</subject><subject>Carcinogenesis, carcinogens and anticarcinogens</subject><subject>Case-Control Studies</subject><subject>Chromosomes, Human, Pair 8 - genetics</subject><subject>Colorectal Neoplasms - epidemiology</subject><subject>Colorectal Neoplasms - genetics</subject><subject>Colorectal Neoplasms - pathology</subject><subject>DNA, Neoplasm - genetics</subject><subject>Female</subject><subject>Gastroenterology. Liver. Pancreas. Abdomen</subject><subject>Gene Frequency</subject><subject>Genome-Wide Association Study</subject><subject>Humans</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>Molecular Epidemiology</subject><subject>Polymorphism, Single Nucleotide - genetics</subject><subject>Prostatic Neoplasms - epidemiology</subject><subject>Prostatic Neoplasms - genetics</subject><subject>Prostatic Neoplasms - pathology</subject><subject>Retrospective Studies</subject><subject>Stomach. Duodenum. Small intestine. Colon. Rectum. Anus</subject><subject>Tumors</subject><subject>White People - genetics</subject><issn>0143-3334</issn><issn>1460-2180</issn><issn>1460-2180</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2009</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkctv1DAQxiMEokvhyBVZSCAuoX7EeVyQlqrbRap4SCAQF8vxjnddHDu1k0IP_O94SbQ8Lj1Z4_npm5nvy7LHBL8kuGEnSgZl3Em77Qlld7IFKUqcU1Lju9kCk4LljLHiKHsQ4yXGpGS8uZ8dkYZTXDV8kf1866_Bomjc1gJyo7LgB7MB1Ht70_nQ70zskIzRKyMH411E382wQ8pbH0AN0iIlnYKAvENqF3zno-8A1Ve0QMahpQ4mAUi6DTobg-8hFcsOfv_Gh9k9LW2ER_N7nH1anX08XecX787fnC4vcsWLYshrykvCVUsrShTUoIsSZI0pZYqlk0qpuaS6AIIl3jQtbbRuWgaSl4zUWlF2nL2adPux7WCjwA1BWtEH08lwI7w04t-OMzux9deCVsnJiiSB57NA8FcjxEF0JiqwVjrwYxRlxVmRTL0V3NtOC7JXfPofeOnH4JILgpKGMcKrKkH5BKngYwygDysTLPbxiyl-McWf-Cd_3_mHnvNOwLMZkFFJq0PKzsQDR0nV1CXfcy8mzo_9rTPnHU0c4McBluFbcoVVXKy_fBXr9-erD6_Lz2LFfgFXytnD</recordid><startdate>20090801</startdate><enddate>20090801</enddate><creator>Kupfer, Sonia S.</creator><creator>Torres, Jada Benn</creator><creator>Hooker, Stanley</creator><creator>Anderson, Jeffrey R.</creator><creator>Skol, Andrew D.</creator><creator>Ellis, Nathan A.</creator><creator>Kittles, Rick A.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T5</scope><scope>7TM</scope><scope>7TO</scope><scope>7U7</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20090801</creationdate><title>Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans</title><author>Kupfer, Sonia S. ; Torres, Jada Benn ; Hooker, Stanley ; Anderson, Jeffrey R. ; Skol, Andrew D. ; Ellis, Nathan A. ; Kittles, Rick A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c544t-825615cb2721ce8ef46ea80223c31636af5a2f4e10a0d9b29ff9b3ea56318fc23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2009</creationdate><topic>Aged</topic><topic>Biological and medical sciences</topic><topic>Black or African American</topic><topic>Black People - genetics</topic><topic>Carcinogenesis, carcinogens and anticarcinogens</topic><topic>Case-Control Studies</topic><topic>Chromosomes, Human, Pair 8 - genetics</topic><topic>Colorectal Neoplasms - epidemiology</topic><topic>Colorectal Neoplasms - genetics</topic><topic>Colorectal Neoplasms - pathology</topic><topic>DNA, Neoplasm - genetics</topic><topic>Female</topic><topic>Gastroenterology. Liver. Pancreas. Abdomen</topic><topic>Gene Frequency</topic><topic>Genome-Wide Association Study</topic><topic>Humans</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>Molecular Epidemiology</topic><topic>Polymorphism, Single Nucleotide - genetics</topic><topic>Prostatic Neoplasms - epidemiology</topic><topic>Prostatic Neoplasms - genetics</topic><topic>Prostatic Neoplasms - pathology</topic><topic>Retrospective Studies</topic><topic>Stomach. Duodenum. Small intestine. Colon. Rectum. Anus</topic><topic>Tumors</topic><topic>White People - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kupfer, Sonia S.</creatorcontrib><creatorcontrib>Torres, Jada Benn</creatorcontrib><creatorcontrib>Hooker, Stanley</creatorcontrib><creatorcontrib>Anderson, Jeffrey R.</creatorcontrib><creatorcontrib>Skol, Andrew D.</creatorcontrib><creatorcontrib>Ellis, Nathan A.</creatorcontrib><creatorcontrib>Kittles, Rick A.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Immunology Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Toxicology Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Carcinogenesis (New York)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kupfer, Sonia S.</au><au>Torres, Jada Benn</au><au>Hooker, Stanley</au><au>Anderson, Jeffrey R.</au><au>Skol, Andrew D.</au><au>Ellis, Nathan A.</au><au>Kittles, Rick A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans</atitle><jtitle>Carcinogenesis (New York)</jtitle><addtitle>Carcinogenesis</addtitle><date>2009-08-01</date><risdate>2009</risdate><volume>30</volume><issue>8</issue><spage>1353</spage><epage>1357</epage><pages>1353-1357</pages><issn>0143-3334</issn><issn>1460-2180</issn><eissn>1460-2180</eissn><coden>CRNGDP</coden><abstract>Regions on chromosome 8q24 harbor susceptibility alleles for multiple cancers including colorectal (region 3) and prostate cancer (regions 1–4). The objectives of the present study were (i) to test whether single-nucleotide polymorphisms (SNPs) in region 4 are associated with colorectal cancer (CRC) in European or African Americans; (ii) to test whether 8q24 SNPs previously shown to be associated with colorectal and prostate cancer also show association in our multiethnic series and (iii) to test for association between 100 ancestry informative markers (AIMs) and CRC in both the African American and European American cohorts. In total, we genotyped nine markers on 8q24 and 100 unlinked AIMs in 569 CRC cases and 439 controls (490 European Americans and 518 African Americans) obtained retrospectively from a hospital-based sample. We found rs7008482 in 8q24 region 4 to be significantly associated with CRC in European Americans (P = 0.03). Also in region 4, we found that a second SNP, rs16900305, trended toward association with CRC in African Americans. The rs6983267 in region 3, previously implicated in CRC risk, trended toward association with disease in European Americans but not in African Americans. Finally, none of the 100 AIMs tested for association reached statistical significance after correction for multiple hypothesis testing. In summary, these results are evidence that 8q24 region 4 contains novel CRC-associated alleles in European and African Americans.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>19520795</pmid><doi>10.1093/carcin/bgp123</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Aged Biological and medical sciences Black or African American Black People - genetics Carcinogenesis, carcinogens and anticarcinogens Case-Control Studies Chromosomes, Human, Pair 8 - genetics Colorectal Neoplasms - epidemiology Colorectal Neoplasms - genetics Colorectal Neoplasms - pathology DNA, Neoplasm - genetics Female Gastroenterology. Liver. Pancreas. Abdomen Gene Frequency Genome-Wide Association Study Humans Male Medical sciences Middle Aged Molecular Epidemiology Polymorphism, Single Nucleotide - genetics Prostatic Neoplasms - epidemiology Prostatic Neoplasms - genetics Prostatic Neoplasms - pathology Retrospective Studies Stomach. Duodenum. Small intestine. Colon. Rectum. Anus Tumors White People - genetics |
title | Novel single nucleotide polymorphism associations with colorectal cancer on chromosome 8q24 in African and European Americans |
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