An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase
Summary Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in...
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| Veröffentlicht in: | British journal of haematology 2008-09, Vol.142 (5), p.802-807 |
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| container_title | British journal of haematology |
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| creator | Kohlmann, Alexander Kipps, Thomas J. Rassenti, Laura Z. Downing, James R. Shurtleff, Sheila A. Mills, Ken I. Gilkes, Amanda F. Hofmann, Wolf‐Karsten Basso, Giuseppe Dell’Orto, Marta Campo Foà, Robin Chiaretti, Sabina De Vos, John Rauhut, Sonja Papenhausen, Peter R. Hernández, Jesus M. Lumbreras, Eva Yeoh, Allen E. Koay, Evelyn S. Li, Rachel Liu, Wei‐min Williams, Paul M. Wieczorek, Lothar Haferlach, Torsten |
| description | Summary
Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in LEukemia (MILE) study. Each laboratory prepared two cell line samples, together with three replicate leukaemia patient lysates in two distinct stages: (i) a 5‐d course of protocol training, and (ii) independent proficiency testing. Unsupervised, supervised, and r2 correlation analyses demonstrated that microarray analysis can be performed with remarkably high intra‐laboratory reproducibility and with comparable quality and reliability. |
| doi_str_mv | 10.1111/j.1365-2141.2008.07261.x |
| format | Article |
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Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in LEukemia (MILE) study. Each laboratory prepared two cell line samples, together with three replicate leukaemia patient lysates in two distinct stages: (i) a 5‐d course of protocol training, and (ii) independent proficiency testing. Unsupervised, supervised, and r2 correlation analyses demonstrated that microarray analysis can be performed with remarkably high intra‐laboratory reproducibility and with comparable quality and reliability.</description><identifier>ISSN: 0007-1048</identifier><identifier>EISSN: 1365-2141</identifier><identifier>DOI: 10.1111/j.1365-2141.2008.07261.x</identifier><identifier>PMID: 18573112</identifier><identifier>CODEN: BJHEAL</identifier><language>eng</language><publisher>Oxford, UK: Blackwell Publishing Ltd</publisher><subject>Adenocarcinoma - genetics ; Biological and medical sciences ; Breast Neoplasms - genetics ; Carcinoma - genetics ; diagnostics ; Europe ; Female ; gene expression profiling ; Gene Expression Profiling - methods ; Gene Expression Profiling - standards ; Haematological Malignancy ; Hematologic and hematopoietic diseases ; Humans ; leukaemia ; Leukemia - diagnosis ; Leukemia - genetics ; Leukemias. Malignant lymphomas. Malignant reticulosis. Myelofibrosis ; Liver Neoplasms - genetics ; Medical sciences ; microarray ; Oligonucleotide Array Sequence Analysis - methods ; Oligonucleotide Array Sequence Analysis - standards ; Pilot Projects ; Reference Standards ; Reproducibility of Results ; RNA ; Singapore ; standardization ; United States</subject><ispartof>British journal of haematology, 2008-09, Vol.142 (5), p.802-807</ispartof><rights>2008 The Authors. Journal Compilation © 2008 Blackwell Publishing Ltd</rights><rights>2008 INIST-CNRS</rights><rights>Journal compilation © 2008 Blackwell Publishing Ltd 2008</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5331-c5a7a824eda26ec8dd6ede062d40826673c5248d142ed725d05c8064d34e90bf3</citedby><cites>FETCH-LOGICAL-c5331-c5a7a824eda26ec8dd6ede062d40826673c5248d142ed725d05c8064d34e90bf3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fj.1365-2141.2008.07261.x$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fj.1365-2141.2008.07261.x$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,1417,1433,27924,27925,45574,45575,46409,46833</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=20576973$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18573112$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kohlmann, Alexander</creatorcontrib><creatorcontrib>Kipps, Thomas J.</creatorcontrib><creatorcontrib>Rassenti, Laura Z.</creatorcontrib><creatorcontrib>Downing, James R.</creatorcontrib><creatorcontrib>Shurtleff, Sheila A.</creatorcontrib><creatorcontrib>Mills, Ken I.</creatorcontrib><creatorcontrib>Gilkes, Amanda F.</creatorcontrib><creatorcontrib>Hofmann, Wolf‐Karsten</creatorcontrib><creatorcontrib>Basso, Giuseppe</creatorcontrib><creatorcontrib>Dell’Orto, Marta Campo</creatorcontrib><creatorcontrib>Foà, Robin</creatorcontrib><creatorcontrib>Chiaretti, Sabina</creatorcontrib><creatorcontrib>De Vos, John</creatorcontrib><creatorcontrib>Rauhut, Sonja</creatorcontrib><creatorcontrib>Papenhausen, Peter R.</creatorcontrib><creatorcontrib>Hernández, Jesus M.</creatorcontrib><creatorcontrib>Lumbreras, Eva</creatorcontrib><creatorcontrib>Yeoh, Allen E.</creatorcontrib><creatorcontrib>Koay, Evelyn S.</creatorcontrib><creatorcontrib>Li, Rachel</creatorcontrib><creatorcontrib>Liu, Wei‐min</creatorcontrib><creatorcontrib>Williams, Paul M.</creatorcontrib><creatorcontrib>Wieczorek, Lothar</creatorcontrib><creatorcontrib>Haferlach, Torsten</creatorcontrib><title>An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase</title><title>British journal of haematology</title><addtitle>Br J Haematol</addtitle><description>Summary
Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in LEukemia (MILE) study. Each laboratory prepared two cell line samples, together with three replicate leukaemia patient lysates in two distinct stages: (i) a 5‐d course of protocol training, and (ii) independent proficiency testing. Unsupervised, supervised, and r2 correlation analyses demonstrated that microarray analysis can be performed with remarkably high intra‐laboratory reproducibility and with comparable quality and reliability.</description><subject>Adenocarcinoma - genetics</subject><subject>Biological and medical sciences</subject><subject>Breast Neoplasms - genetics</subject><subject>Carcinoma - genetics</subject><subject>diagnostics</subject><subject>Europe</subject><subject>Female</subject><subject>gene expression profiling</subject><subject>Gene Expression Profiling - methods</subject><subject>Gene Expression Profiling - standards</subject><subject>Haematological Malignancy</subject><subject>Hematologic and hematopoietic diseases</subject><subject>Humans</subject><subject>leukaemia</subject><subject>Leukemia - diagnosis</subject><subject>Leukemia - genetics</subject><subject>Leukemias. Malignant lymphomas. Malignant reticulosis. Myelofibrosis</subject><subject>Liver Neoplasms - genetics</subject><subject>Medical sciences</subject><subject>microarray</subject><subject>Oligonucleotide Array Sequence Analysis - methods</subject><subject>Oligonucleotide Array Sequence Analysis - standards</subject><subject>Pilot Projects</subject><subject>Reference Standards</subject><subject>Reproducibility of Results</subject><subject>RNA</subject><subject>Singapore</subject><subject>standardization</subject><subject>United States</subject><issn>0007-1048</issn><issn>1365-2141</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>WIN</sourceid><sourceid>EIF</sourceid><recordid>eNqNkt9u0zAUxiPExMrgFZBv4K6d_8VJkUDapsGGiriBa-vMPmndJXawk63lxXg9krYqcAW-sK1zft-nY-vLMsLojA3rfD1jQuVTziSbcUrLGS24YrPNk2xybDzNJpTSYsqoLE-z5ymtKWWC5uxZdsrKvBCM8Un288IT5zuMHjoXPNQkdeAtROt-7CqkjWEZoWmQdOFxqCfSrZBA29bO7IlQkSV6JLhpI6Z0EFWudn45mJMY-s4N_Rr7e8DGAbEOlj6kzpn0dmf32ZkYIEbYklvvw8POOI3ixXV_v9OkrrfbwRjbFSR8kZ1UUCd8eTjPsm8frr9e3UwXXz7eXl0spiYXgg07FFByiRa4QlNaq9AiVdxKWnKlCmFyLkvLJEdb8NzS3JRUSSskzuldJc6y93vftr9r0Br0XYRat9E1ELc6gNN_d7xb6WV40FzlUhbFYPDmYBDD9x5TpxuXDNY1eAx90mqeCybV_J8gZ1QolY9guQeHL0spYnWchlE9xkOv9ZgCPaZAj_HQu3jozSB99edrfgsPeRiA1wcAkoG6iuCNS0eO07xQ80IM3Ls99-hq3P73APry0814E78AcfTcyA</recordid><startdate>200809</startdate><enddate>200809</enddate><creator>Kohlmann, Alexander</creator><creator>Kipps, Thomas J.</creator><creator>Rassenti, Laura Z.</creator><creator>Downing, James R.</creator><creator>Shurtleff, Sheila A.</creator><creator>Mills, Ken I.</creator><creator>Gilkes, Amanda F.</creator><creator>Hofmann, Wolf‐Karsten</creator><creator>Basso, Giuseppe</creator><creator>Dell’Orto, Marta Campo</creator><creator>Foà, Robin</creator><creator>Chiaretti, Sabina</creator><creator>De Vos, John</creator><creator>Rauhut, Sonja</creator><creator>Papenhausen, Peter R.</creator><creator>Hernández, Jesus M.</creator><creator>Lumbreras, Eva</creator><creator>Yeoh, Allen E.</creator><creator>Koay, Evelyn S.</creator><creator>Li, Rachel</creator><creator>Liu, Wei‐min</creator><creator>Williams, Paul M.</creator><creator>Wieczorek, Lothar</creator><creator>Haferlach, Torsten</creator><general>Blackwell Publishing Ltd</general><general>Blackwell</general><scope>24P</scope><scope>WIN</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7T5</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>200809</creationdate><title>An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase</title><author>Kohlmann, Alexander ; Kipps, Thomas J. ; Rassenti, Laura Z. ; Downing, James R. ; Shurtleff, Sheila A. ; Mills, Ken I. ; Gilkes, Amanda F. ; Hofmann, Wolf‐Karsten ; Basso, Giuseppe ; Dell’Orto, Marta Campo ; Foà, Robin ; Chiaretti, Sabina ; De Vos, John ; Rauhut, Sonja ; Papenhausen, Peter R. ; Hernández, Jesus M. ; Lumbreras, Eva ; Yeoh, Allen E. ; Koay, Evelyn S. ; Li, Rachel ; Liu, Wei‐min ; Williams, Paul M. ; Wieczorek, Lothar ; Haferlach, Torsten</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5331-c5a7a824eda26ec8dd6ede062d40826673c5248d142ed725d05c8064d34e90bf3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Adenocarcinoma - genetics</topic><topic>Biological and medical sciences</topic><topic>Breast Neoplasms - genetics</topic><topic>Carcinoma - genetics</topic><topic>diagnostics</topic><topic>Europe</topic><topic>Female</topic><topic>gene expression profiling</topic><topic>Gene Expression Profiling - methods</topic><topic>Gene Expression Profiling - standards</topic><topic>Haematological Malignancy</topic><topic>Hematologic and hematopoietic diseases</topic><topic>Humans</topic><topic>leukaemia</topic><topic>Leukemia - diagnosis</topic><topic>Leukemia - genetics</topic><topic>Leukemias. Malignant lymphomas. Malignant reticulosis. Myelofibrosis</topic><topic>Liver Neoplasms - genetics</topic><topic>Medical sciences</topic><topic>microarray</topic><topic>Oligonucleotide Array Sequence Analysis - methods</topic><topic>Oligonucleotide Array Sequence Analysis - standards</topic><topic>Pilot Projects</topic><topic>Reference Standards</topic><topic>Reproducibility of Results</topic><topic>RNA</topic><topic>Singapore</topic><topic>standardization</topic><topic>United States</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kohlmann, Alexander</creatorcontrib><creatorcontrib>Kipps, Thomas J.</creatorcontrib><creatorcontrib>Rassenti, Laura Z.</creatorcontrib><creatorcontrib>Downing, James R.</creatorcontrib><creatorcontrib>Shurtleff, Sheila A.</creatorcontrib><creatorcontrib>Mills, Ken I.</creatorcontrib><creatorcontrib>Gilkes, Amanda F.</creatorcontrib><creatorcontrib>Hofmann, Wolf‐Karsten</creatorcontrib><creatorcontrib>Basso, Giuseppe</creatorcontrib><creatorcontrib>Dell’Orto, Marta Campo</creatorcontrib><creatorcontrib>Foà, Robin</creatorcontrib><creatorcontrib>Chiaretti, Sabina</creatorcontrib><creatorcontrib>De Vos, John</creatorcontrib><creatorcontrib>Rauhut, Sonja</creatorcontrib><creatorcontrib>Papenhausen, Peter R.</creatorcontrib><creatorcontrib>Hernández, Jesus M.</creatorcontrib><creatorcontrib>Lumbreras, Eva</creatorcontrib><creatorcontrib>Yeoh, Allen E.</creatorcontrib><creatorcontrib>Koay, Evelyn S.</creatorcontrib><creatorcontrib>Li, Rachel</creatorcontrib><creatorcontrib>Liu, Wei‐min</creatorcontrib><creatorcontrib>Williams, Paul M.</creatorcontrib><creatorcontrib>Wieczorek, Lothar</creatorcontrib><creatorcontrib>Haferlach, Torsten</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>Wiley Online Library Free Content</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Immunology Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>British journal of haematology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kohlmann, Alexander</au><au>Kipps, Thomas J.</au><au>Rassenti, Laura Z.</au><au>Downing, James R.</au><au>Shurtleff, Sheila A.</au><au>Mills, Ken I.</au><au>Gilkes, Amanda F.</au><au>Hofmann, Wolf‐Karsten</au><au>Basso, Giuseppe</au><au>Dell’Orto, Marta Campo</au><au>Foà, Robin</au><au>Chiaretti, Sabina</au><au>De Vos, John</au><au>Rauhut, Sonja</au><au>Papenhausen, Peter R.</au><au>Hernández, Jesus M.</au><au>Lumbreras, Eva</au><au>Yeoh, Allen E.</au><au>Koay, Evelyn S.</au><au>Li, Rachel</au><au>Liu, Wei‐min</au><au>Williams, Paul M.</au><au>Wieczorek, Lothar</au><au>Haferlach, Torsten</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase</atitle><jtitle>British journal of haematology</jtitle><addtitle>Br J Haematol</addtitle><date>2008-09</date><risdate>2008</risdate><volume>142</volume><issue>5</issue><spage>802</spage><epage>807</epage><pages>802-807</pages><issn>0007-1048</issn><eissn>1365-2141</eissn><coden>BJHEAL</coden><abstract>Summary
Gene expression profiling has the potential to enhance current methods for the diagnosis of haematological malignancies. Here, we present data on 204 analyses from an international standardization programme that was conducted in 11 laboratories as a prephase to the Microarray Innovations in LEukemia (MILE) study. Each laboratory prepared two cell line samples, together with three replicate leukaemia patient lysates in two distinct stages: (i) a 5‐d course of protocol training, and (ii) independent proficiency testing. Unsupervised, supervised, and r2 correlation analyses demonstrated that microarray analysis can be performed with remarkably high intra‐laboratory reproducibility and with comparable quality and reliability.</abstract><cop>Oxford, UK</cop><pub>Blackwell Publishing Ltd</pub><pmid>18573112</pmid><doi>10.1111/j.1365-2141.2008.07261.x</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Adenocarcinoma - genetics Biological and medical sciences Breast Neoplasms - genetics Carcinoma - genetics diagnostics Europe Female gene expression profiling Gene Expression Profiling - methods Gene Expression Profiling - standards Haematological Malignancy Hematologic and hematopoietic diseases Humans leukaemia Leukemia - diagnosis Leukemia - genetics Leukemias. Malignant lymphomas. Malignant reticulosis. Myelofibrosis Liver Neoplasms - genetics Medical sciences microarray Oligonucleotide Array Sequence Analysis - methods Oligonucleotide Array Sequence Analysis - standards Pilot Projects Reference Standards Reproducibility of Results RNA Singapore standardization United States |
| title | An international standardization programme towards the application of gene expression profiling in routine leukaemia diagnostics: the Microarray Innovations in LEukemia study prephase |
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