Correlation between clinical severity in patients with Rett syndrome with a p.R168X or p.T158M MECP2 mutation, and the direction and degree of skewing of X-chromosome inactivation
Introduction: Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder that is usually associated with mutations in the MECP2 gene. The most common mutations in the gene are p.R168X and p.T158M. The influence of X-chromosome inactivation (XCI) on clinical severity in patients with RTT...
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description | Introduction: Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder that is usually associated with mutations in the MECP2 gene. The most common mutations in the gene are p.R168X and p.T158M. The influence of X-chromosome inactivation (XCI) on clinical severity in patients with RTT with these mutations was investigated, taking into account the extent and direction of skewing. Methods: Female patients and their parents were recruited from the UK and Australia. Clinical severity was measured by the Pineda Severity and Kerr profile scores. The degree of XCI and its direction relative to the X chromosome parent of origin were measured in DNA prepared from peripheral blood leucocytes, and allele-specific polymerase chain reaction was used to determine the parental origin of mutation. Combining these, the percentage of cells expected to express the mutant allele was calculated. Results: Linear regression analysis was undertaken for fully informative cases with p.R168X (n = 23) and p.T158M (n = 20) mutations. A statistically significant increase in clinical severity with increase in the proportion of active mutated allele was shown for both the p.R168X and p.T158M mutations. Conclusions: XCI may vary in neurological and haematological tissues. However, these data are the first to show a relationship between the degree and direction of XCI in leucocytes and clinical severity in RTT, although the clinical utility of this in giving a prognosis for individual patients is unclear. |
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The most common mutations in the gene are p.R168X and p.T158M. The influence of X-chromosome inactivation (XCI) on clinical severity in patients with RTT with these mutations was investigated, taking into account the extent and direction of skewing. Methods: Female patients and their parents were recruited from the UK and Australia. Clinical severity was measured by the Pineda Severity and Kerr profile scores. The degree of XCI and its direction relative to the X chromosome parent of origin were measured in DNA prepared from peripheral blood leucocytes, and allele-specific polymerase chain reaction was used to determine the parental origin of mutation. Combining these, the percentage of cells expected to express the mutant allele was calculated. Results: Linear regression analysis was undertaken for fully informative cases with p.R168X (n = 23) and p.T158M (n = 20) mutations. A statistically significant increase in clinical severity with increase in the proportion of active mutated allele was shown for both the p.R168X and p.T158M mutations. Conclusions: XCI may vary in neurological and haematological tissues. However, these data are the first to show a relationship between the degree and direction of XCI in leucocytes and clinical severity in RTT, although the clinical utility of this in giving a prognosis for individual patients is unclear.</description><identifier>ISSN: 0022-2593</identifier><identifier>ISSN: 1468-6244</identifier><identifier>EISSN: 1468-6244</identifier><identifier>DOI: 10.1136/jmg.2006.045260</identifier><identifier>PMID: 16905679</identifier><identifier>CODEN: JMDGAE</identifier><language>eng</language><publisher>England: BMJ Publishing Group Ltd</publisher><subject>3′ untranslated region ; 3′UTR ; Amino Acid Substitution ; Australia ; Chromosomes ; Deoxyribonucleic acid ; DNA ; DNA methylation ; Epigenetics ; Families & family life ; Genes ; Genetic testing ; Genotype & phenotype ; Humans ; Letter to JMG ; Methyl-CpG-Binding Protein 2 - genetics ; Mutation ; Patients ; PCR ; polymerase chain reaction ; Rett syndrome ; Rett Syndrome - genetics ; Rett Syndrome - physiopathology ; RTT ; Scotland ; Severity of Illness Index ; single-nucleotide polymorphism ; SNP ; Studies ; Wales ; X Chromosome Inactivation ; XCI</subject><ispartof>Journal of medical genetics, 2007-02, Vol.44 (2), p.148-152</ispartof><rights>Copyright 2007 Journal of Medical Genetics</rights><rights>Copyright: 2007 Copyright 2007 Journal of Medical Genetics</rights><rights>Copyright © 2007 BMJ Publishing Group Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b523t-70f795b95be97eaef75bd801a02dc22f46a0b13f4e59ea0c671d0c416f09ca0f3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttp://jmg.bmj.com/content/44/2/148.full.pdf$$EPDF$$P50$$Gbmj$$H</linktopdf><linktohtml>$$Uhttp://jmg.bmj.com/content/44/2/148.full$$EHTML$$P50$$Gbmj$$H</linktohtml><link.rule.ids>114,115,230,314,727,780,784,885,3196,23571,27924,27925,53791,53793,77600,77631</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16905679$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Archer, Hayley</creatorcontrib><creatorcontrib>Evans, Julie</creatorcontrib><creatorcontrib>Leonard, Helen</creatorcontrib><creatorcontrib>Colvin, Lyn</creatorcontrib><creatorcontrib>Ravine, David</creatorcontrib><creatorcontrib>Christodoulou, John</creatorcontrib><creatorcontrib>Williamson, Sarah</creatorcontrib><creatorcontrib>Charman, Tony</creatorcontrib><creatorcontrib>Bailey, Mark E S</creatorcontrib><creatorcontrib>Sampson, Julian</creatorcontrib><creatorcontrib>de Klerk, Nicholas</creatorcontrib><creatorcontrib>Clarke, Angus</creatorcontrib><title>Correlation between clinical severity in patients with Rett syndrome with a p.R168X or p.T158M MECP2 mutation, and the direction and degree of skewing of X-chromosome inactivation</title><title>Journal of medical genetics</title><addtitle>J Med Genet</addtitle><description>Introduction: Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder that is usually associated with mutations in the MECP2 gene. The most common mutations in the gene are p.R168X and p.T158M. The influence of X-chromosome inactivation (XCI) on clinical severity in patients with RTT with these mutations was investigated, taking into account the extent and direction of skewing. Methods: Female patients and their parents were recruited from the UK and Australia. Clinical severity was measured by the Pineda Severity and Kerr profile scores. The degree of XCI and its direction relative to the X chromosome parent of origin were measured in DNA prepared from peripheral blood leucocytes, and allele-specific polymerase chain reaction was used to determine the parental origin of mutation. Combining these, the percentage of cells expected to express the mutant allele was calculated. Results: Linear regression analysis was undertaken for fully informative cases with p.R168X (n = 23) and p.T158M (n = 20) mutations. A statistically significant increase in clinical severity with increase in the proportion of active mutated allele was shown for both the p.R168X and p.T158M mutations. Conclusions: XCI may vary in neurological and haematological tissues. However, these data are the first to show a relationship between the degree and direction of XCI in leucocytes and clinical severity in RTT, although the clinical utility of this in giving a prognosis for individual patients is unclear.</description><subject>3′ untranslated region</subject><subject>3′UTR</subject><subject>Amino Acid Substitution</subject><subject>Australia</subject><subject>Chromosomes</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA methylation</subject><subject>Epigenetics</subject><subject>Families & family life</subject><subject>Genes</subject><subject>Genetic testing</subject><subject>Genotype & phenotype</subject><subject>Humans</subject><subject>Letter to JMG</subject><subject>Methyl-CpG-Binding Protein 2 - genetics</subject><subject>Mutation</subject><subject>Patients</subject><subject>PCR</subject><subject>polymerase chain reaction</subject><subject>Rett syndrome</subject><subject>Rett Syndrome - genetics</subject><subject>Rett Syndrome - physiopathology</subject><subject>RTT</subject><subject>Scotland</subject><subject>Severity of Illness Index</subject><subject>single-nucleotide polymorphism</subject><subject>SNP</subject><subject>Studies</subject><subject>Wales</subject><subject>X Chromosome Inactivation</subject><subject>XCI</subject><issn>0022-2593</issn><issn>1468-6244</issn><issn>1468-6244</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkk1v1DAQhiMEoqVw5oYsIXFAZDt2Eju5VEKr8qWWj2qB3iwnmex6mziL7d1lfxd_EGezKh-XSpZszTx-xzN-o-gphQmlCT9ddvMJA-ATSDPG4V50TFOex5yl6f3oGICxmGVFchQ9cm4JQBNB-cPoiPICMi6K4-jXtLcWW-V1b0iJfotoSNVqoyvVEocbtNrviDZkFRg03pGt9gtyhd4TtzO17TscQ4qsJleU59ekt-E4o1l-SS7Pp58Z6dZ-X-EVUaYmfoGk1harfdEhUuPcIpK-Ie4Gt9rMh-N1XC2Ceu-GCtqogG_2Ko-jB41qHT457CfR1zfns-m7-OLT2_fT1xdxmbHExwIaUWRlWFgIVNiIrKxzoApYXTHWpFxBSZMmxaxABRUXtIYqpbyBolLQJCfR2ai7Wpcd1lXo3qpWrqzulN3JXmn5b8bohZz3GxlGngMXQeDFQcD2P9bovOy0q7BtlcF-7WT4BQCR5HeCtMhEkVII4PP_wGW_tiZMQVKR0zB9yAfqdKQq2ztnsbl9MwU5-EYG38jBN3L0Tbjx7O9W__AHowQgHgHtPP68zSt7I0OjIpMfv00lm83S4vuHQn4J_MuRL7vlndV_A26-3Q4</recordid><startdate>20070201</startdate><enddate>20070201</enddate><creator>Archer, Hayley</creator><creator>Evans, Julie</creator><creator>Leonard, Helen</creator><creator>Colvin, Lyn</creator><creator>Ravine, David</creator><creator>Christodoulou, John</creator><creator>Williamson, Sarah</creator><creator>Charman, Tony</creator><creator>Bailey, Mark E S</creator><creator>Sampson, Julian</creator><creator>de Klerk, Nicholas</creator><creator>Clarke, Angus</creator><general>BMJ Publishing Group Ltd</general><general>BMJ Publishing Group LTD</general><general>BMJ Group</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BTHHO</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20070201</creationdate><title>Correlation between clinical severity in patients with Rett syndrome with a p.R168X or p.T158M MECP2 mutation, and the direction and degree of skewing of X-chromosome inactivation</title><author>Archer, Hayley ; Evans, Julie ; Leonard, Helen ; Colvin, Lyn ; Ravine, David ; Christodoulou, John ; Williamson, Sarah ; Charman, Tony ; Bailey, Mark E S ; Sampson, Julian ; de Klerk, Nicholas ; Clarke, Angus</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b523t-70f795b95be97eaef75bd801a02dc22f46a0b13f4e59ea0c671d0c416f09ca0f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>3′ untranslated region</topic><topic>3′UTR</topic><topic>Amino Acid Substitution</topic><topic>Australia</topic><topic>Chromosomes</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>DNA methylation</topic><topic>Epigenetics</topic><topic>Families & family life</topic><topic>Genes</topic><topic>Genetic testing</topic><topic>Genotype & phenotype</topic><topic>Humans</topic><topic>Letter to JMG</topic><topic>Methyl-CpG-Binding Protein 2 - genetics</topic><topic>Mutation</topic><topic>Patients</topic><topic>PCR</topic><topic>polymerase chain reaction</topic><topic>Rett syndrome</topic><topic>Rett Syndrome - genetics</topic><topic>Rett Syndrome - physiopathology</topic><topic>RTT</topic><topic>Scotland</topic><topic>Severity of Illness Index</topic><topic>single-nucleotide polymorphism</topic><topic>SNP</topic><topic>Studies</topic><topic>Wales</topic><topic>X Chromosome Inactivation</topic><topic>XCI</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Archer, Hayley</creatorcontrib><creatorcontrib>Evans, Julie</creatorcontrib><creatorcontrib>Leonard, Helen</creatorcontrib><creatorcontrib>Colvin, Lyn</creatorcontrib><creatorcontrib>Ravine, David</creatorcontrib><creatorcontrib>Christodoulou, John</creatorcontrib><creatorcontrib>Williamson, Sarah</creatorcontrib><creatorcontrib>Charman, Tony</creatorcontrib><creatorcontrib>Bailey, Mark E S</creatorcontrib><creatorcontrib>Sampson, Julian</creatorcontrib><creatorcontrib>de Klerk, Nicholas</creatorcontrib><creatorcontrib>Clarke, Angus</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>BMJ Journals</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of medical genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Archer, Hayley</au><au>Evans, Julie</au><au>Leonard, Helen</au><au>Colvin, Lyn</au><au>Ravine, David</au><au>Christodoulou, John</au><au>Williamson, Sarah</au><au>Charman, Tony</au><au>Bailey, Mark E S</au><au>Sampson, Julian</au><au>de Klerk, Nicholas</au><au>Clarke, Angus</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Correlation between clinical severity in patients with Rett syndrome with a p.R168X or p.T158M MECP2 mutation, and the direction and degree of skewing of X-chromosome inactivation</atitle><jtitle>Journal of medical genetics</jtitle><addtitle>J Med Genet</addtitle><date>2007-02-01</date><risdate>2007</risdate><volume>44</volume><issue>2</issue><spage>148</spage><epage>152</epage><pages>148-152</pages><issn>0022-2593</issn><issn>1468-6244</issn><eissn>1468-6244</eissn><coden>JMDGAE</coden><abstract>Introduction: Rett syndrome (RTT) is an X-linked dominant neurodevelopmental disorder that is usually associated with mutations in the MECP2 gene. The most common mutations in the gene are p.R168X and p.T158M. The influence of X-chromosome inactivation (XCI) on clinical severity in patients with RTT with these mutations was investigated, taking into account the extent and direction of skewing. Methods: Female patients and their parents were recruited from the UK and Australia. Clinical severity was measured by the Pineda Severity and Kerr profile scores. The degree of XCI and its direction relative to the X chromosome parent of origin were measured in DNA prepared from peripheral blood leucocytes, and allele-specific polymerase chain reaction was used to determine the parental origin of mutation. Combining these, the percentage of cells expected to express the mutant allele was calculated. Results: Linear regression analysis was undertaken for fully informative cases with p.R168X (n = 23) and p.T158M (n = 20) mutations. A statistically significant increase in clinical severity with increase in the proportion of active mutated allele was shown for both the p.R168X and p.T158M mutations. Conclusions: XCI may vary in neurological and haematological tissues. However, these data are the first to show a relationship between the degree and direction of XCI in leucocytes and clinical severity in RTT, although the clinical utility of this in giving a prognosis for individual patients is unclear.</abstract><cop>England</cop><pub>BMJ Publishing Group Ltd</pub><pmid>16905679</pmid><doi>10.1136/jmg.2006.045260</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 3′ untranslated region 3′UTR Amino Acid Substitution Australia Chromosomes Deoxyribonucleic acid DNA DNA methylation Epigenetics Families & family life Genes Genetic testing Genotype & phenotype Humans Letter to JMG Methyl-CpG-Binding Protein 2 - genetics Mutation Patients PCR polymerase chain reaction Rett syndrome Rett Syndrome - genetics Rett Syndrome - physiopathology RTT Scotland Severity of Illness Index single-nucleotide polymorphism SNP Studies Wales X Chromosome Inactivation XCI |
title | Correlation between clinical severity in patients with Rett syndrome with a p.R168X or p.T158M MECP2 mutation, and the direction and degree of skewing of X-chromosome inactivation |
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