LocalMove: computing on-lattice fits for biopolymers
Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for eithe...
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| Veröffentlicht in: | Nucleic acids research 2008-07, Vol.36 (suppl-2), p.W216-W222 |
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| container_issue | suppl-2 |
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| container_title | Nucleic acids research |
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| creator | Ponty, Y Istrate, R Porcelli, E Clote, P |
| description | Given an input Protein Data Bank file (PDB) for a protein or RNA molecule, LocalMove is a web server that determines an on-lattice representation for the input biomolecule. The web server implements a Markov Chain Monte-Carlo algorithm with simulated annealing to compute an approximate fit for either the coarse-grain model or backbone model on either the cubic or face-centered cubic lattice. LocalMove returns a PDB file as output, as well as dynamic movie of 3D images of intermediate conformations during the computation. The LocalMove server is publicly available at http://bioinformatics.bc.edu/clotelab/localmove/. |
| doi_str_mv | 10.1093/nar/gkn367 |
| format | Article |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Algorithms Bioinformatics Computer Science Internet Life Sciences Models, Molecular Nucleic Acid Conformation Protein Conformation Quantitative Methods RNA - chemistry Software |
| title | LocalMove: computing on-lattice fits for biopolymers |
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