Mutants in DsbB that Appear to Redirect Oxidation through the Disulfide Isomerization Pathway
Disulfide bond formation occurs in secreted proteins in Escherichia coli when the disulfide oxidoreductase DsbA, a soluble periplasmic protein, nonspecifically transfers a disulfide to a substrate protein. The catalytic disulfide of DsbA is regenerated by the inner-membrane protein DsbB. To help ide...
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description | Disulfide bond formation occurs in secreted proteins in
Escherichia coli when the disulfide oxidoreductase DsbA, a soluble periplasmic protein, nonspecifically transfers a disulfide to a substrate protein. The catalytic disulfide of DsbA is regenerated by the inner-membrane protein DsbB. To help identify the specificity determinants in DsbB and to understand the nature of the kinetic barrier preventing direct oxidation of newly secreted proteins by DsbB, we imposed selective pressure to find novel mutations in DsbB that would function to bypass the need for the disulfide carrier DsbA. We found a series of mutations localized to a short horizontal α-helix anchored near the outer surface of the inner membrane of DsbB that eliminated the need for DsbA. These mutations changed hydrophobic residues into nonhydrophobic residues. We hypothesize that these mutations may act by decreasing the affinity of this α-helix to the membrane. The DsbB mutants were dependent on the disulfide oxidoreductase DsbC, a soluble periplasmic thiol–disulfide isomerase, for complementation. DsbB is not normally able to oxidize DsbC, possibly due to a steric clash that occurs between DsbC and the membrane adjacent to DsbB. DsbC must be in the reduced form to function as an isomerase. In contrast, DsbA must remain oxidized to function as an oxidizing thiol–disulfide oxidoreductase. The lack of interaction that normally exists between DsbB and DsbC appears to provide a means to separate the DsbA–DsbB oxidation pathway and the DsbC–DsbD isomerization pathway. Our mutants in DsbB may act by redirecting oxidant flow to take place through the isomerization pathway. |
doi_str_mv | 10.1016/j.jmb.2008.01.058 |
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Escherichia coli when the disulfide oxidoreductase DsbA, a soluble periplasmic protein, nonspecifically transfers a disulfide to a substrate protein. The catalytic disulfide of DsbA is regenerated by the inner-membrane protein DsbB. To help identify the specificity determinants in DsbB and to understand the nature of the kinetic barrier preventing direct oxidation of newly secreted proteins by DsbB, we imposed selective pressure to find novel mutations in DsbB that would function to bypass the need for the disulfide carrier DsbA. We found a series of mutations localized to a short horizontal α-helix anchored near the outer surface of the inner membrane of DsbB that eliminated the need for DsbA. These mutations changed hydrophobic residues into nonhydrophobic residues. We hypothesize that these mutations may act by decreasing the affinity of this α-helix to the membrane. The DsbB mutants were dependent on the disulfide oxidoreductase DsbC, a soluble periplasmic thiol–disulfide isomerase, for complementation. DsbB is not normally able to oxidize DsbC, possibly due to a steric clash that occurs between DsbC and the membrane adjacent to DsbB. DsbC must be in the reduced form to function as an isomerase. In contrast, DsbA must remain oxidized to function as an oxidizing thiol–disulfide oxidoreductase. The lack of interaction that normally exists between DsbB and DsbC appears to provide a means to separate the DsbA–DsbB oxidation pathway and the DsbC–DsbD isomerization pathway. Our mutants in DsbB may act by redirecting oxidant flow to take place through the isomerization pathway.</description><identifier>ISSN: 0022-2836</identifier><identifier>EISSN: 1089-8638</identifier><identifier>DOI: 10.1016/j.jmb.2008.01.058</identifier><identifier>PMID: 18325532</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>Bacterial Proteins - chemistry ; Bacterial Proteins - genetics ; Bacterial Proteins - metabolism ; Cadmium - pharmacology ; disulfide bond formation ; Disulfides - chemistry ; Disulfides - metabolism ; DsbA ; DsbB ; DsbC ; Escherichia coli ; Escherichia coli - genetics ; Escherichia coli - metabolism ; Escherichia coli Proteins - chemistry ; Escherichia coli Proteins - genetics ; Escherichia coli Proteins - metabolism ; Glutathione - metabolism ; Isomerism ; Membrane Proteins - chemistry ; Membrane Proteins - genetics ; Membrane Proteins - metabolism ; Models, Molecular ; Mutation ; Oxidation-Reduction ; Protein Disulfide-Isomerases - chemistry ; Protein Disulfide-Isomerases - genetics ; Protein Disulfide-Isomerases - metabolism ; Protein Folding ; Protein Structure, Secondary ; Protein Structure, Tertiary ; Signal Transduction - drug effects ; Substrate Specificity</subject><ispartof>Journal of molecular biology, 2008-04, Vol.377 (5), p.1433-1442</ispartof><rights>2008 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c480t-ec698e4b4c1a5c146af6a686632207487a79fa1400411d819c62be8d3bbebce03</citedby><cites>FETCH-LOGICAL-c480t-ec698e4b4c1a5c146af6a686632207487a79fa1400411d819c62be8d3bbebce03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.jmb.2008.01.058$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,776,780,881,3536,27903,27904,45974</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18325532$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pan, Jonathan L.</creatorcontrib><creatorcontrib>Sliskovic, Inga</creatorcontrib><creatorcontrib>Bardwell, James C.A.</creatorcontrib><title>Mutants in DsbB that Appear to Redirect Oxidation through the Disulfide Isomerization Pathway</title><title>Journal of molecular biology</title><addtitle>J Mol Biol</addtitle><description>Disulfide bond formation occurs in secreted proteins in
Escherichia coli when the disulfide oxidoreductase DsbA, a soluble periplasmic protein, nonspecifically transfers a disulfide to a substrate protein. The catalytic disulfide of DsbA is regenerated by the inner-membrane protein DsbB. To help identify the specificity determinants in DsbB and to understand the nature of the kinetic barrier preventing direct oxidation of newly secreted proteins by DsbB, we imposed selective pressure to find novel mutations in DsbB that would function to bypass the need for the disulfide carrier DsbA. We found a series of mutations localized to a short horizontal α-helix anchored near the outer surface of the inner membrane of DsbB that eliminated the need for DsbA. These mutations changed hydrophobic residues into nonhydrophobic residues. We hypothesize that these mutations may act by decreasing the affinity of this α-helix to the membrane. The DsbB mutants were dependent on the disulfide oxidoreductase DsbC, a soluble periplasmic thiol–disulfide isomerase, for complementation. DsbB is not normally able to oxidize DsbC, possibly due to a steric clash that occurs between DsbC and the membrane adjacent to DsbB. DsbC must be in the reduced form to function as an isomerase. In contrast, DsbA must remain oxidized to function as an oxidizing thiol–disulfide oxidoreductase. The lack of interaction that normally exists between DsbB and DsbC appears to provide a means to separate the DsbA–DsbB oxidation pathway and the DsbC–DsbD isomerization pathway. Our mutants in DsbB may act by redirecting oxidant flow to take place through the isomerization pathway.</description><subject>Bacterial Proteins - chemistry</subject><subject>Bacterial Proteins - genetics</subject><subject>Bacterial Proteins - metabolism</subject><subject>Cadmium - pharmacology</subject><subject>disulfide bond formation</subject><subject>Disulfides - chemistry</subject><subject>Disulfides - metabolism</subject><subject>DsbA</subject><subject>DsbB</subject><subject>DsbC</subject><subject>Escherichia coli</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - metabolism</subject><subject>Escherichia coli Proteins - chemistry</subject><subject>Escherichia coli Proteins - genetics</subject><subject>Escherichia coli Proteins - metabolism</subject><subject>Glutathione - metabolism</subject><subject>Isomerism</subject><subject>Membrane Proteins - chemistry</subject><subject>Membrane Proteins - genetics</subject><subject>Membrane Proteins - metabolism</subject><subject>Models, Molecular</subject><subject>Mutation</subject><subject>Oxidation-Reduction</subject><subject>Protein Disulfide-Isomerases - chemistry</subject><subject>Protein Disulfide-Isomerases - genetics</subject><subject>Protein Disulfide-Isomerases - metabolism</subject><subject>Protein Folding</subject><subject>Protein Structure, Secondary</subject><subject>Protein Structure, Tertiary</subject><subject>Signal Transduction - drug effects</subject><subject>Substrate Specificity</subject><issn>0022-2836</issn><issn>1089-8638</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EotvCD-CCfOKWMLYTxxESUmkpVCoqQnBEluNMul4l8dZ2CuXX49Wu-LjAaQ7zzGvPPIQ8Y1AyYPLlptxMXckBVAmshFo9ICsGqi2UFOohWQFwXnAl5BE5jnEDALWo1GNyxJTgdS34inz9sCQzp0jdTM9j94amtUn0dLtFE2jy9BP2LqBN9Pq7601yfs5E8MvNOlek5y4u4-B6pJfRTxjcjz3z0aT1N3P_hDwazBjx6aGekC8Xbz-fvS-urt9dnp1eFbZSkAq0slVYdZVlpraskmaQRiopBefQVKoxTTsYVgFUjPWKtVbyDlUvug47iyBOyOt97nbpJuwtzimYUW-Dm0y41944_Xdndmt94-80Fy3jDc8BLw4Bwd8uGJOeXLQ4jmZGv0Td5JebStT_BTkoVdewS2R70AYfY8Dh128Y6J09vdHZnt7Z08B0tpdnnv-5xu-Jg64MvNoDmI955zDoaB3O9iBJ9979I_4nlwSsJw</recordid><startdate>20080411</startdate><enddate>20080411</enddate><creator>Pan, Jonathan L.</creator><creator>Sliskovic, Inga</creator><creator>Bardwell, James C.A.</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>C1K</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20080411</creationdate><title>Mutants in DsbB that Appear to Redirect Oxidation through the Disulfide Isomerization Pathway</title><author>Pan, Jonathan L. ; Sliskovic, Inga ; Bardwell, James C.A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c480t-ec698e4b4c1a5c146af6a686632207487a79fa1400411d819c62be8d3bbebce03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Bacterial Proteins - chemistry</topic><topic>Bacterial Proteins - genetics</topic><topic>Bacterial Proteins - metabolism</topic><topic>Cadmium - pharmacology</topic><topic>disulfide bond formation</topic><topic>Disulfides - chemistry</topic><topic>Disulfides - metabolism</topic><topic>DsbA</topic><topic>DsbB</topic><topic>DsbC</topic><topic>Escherichia coli</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - metabolism</topic><topic>Escherichia coli Proteins - chemistry</topic><topic>Escherichia coli Proteins - genetics</topic><topic>Escherichia coli Proteins - metabolism</topic><topic>Glutathione - metabolism</topic><topic>Isomerism</topic><topic>Membrane Proteins - chemistry</topic><topic>Membrane Proteins - genetics</topic><topic>Membrane Proteins - metabolism</topic><topic>Models, Molecular</topic><topic>Mutation</topic><topic>Oxidation-Reduction</topic><topic>Protein Disulfide-Isomerases - chemistry</topic><topic>Protein Disulfide-Isomerases - genetics</topic><topic>Protein Disulfide-Isomerases - metabolism</topic><topic>Protein Folding</topic><topic>Protein Structure, Secondary</topic><topic>Protein Structure, Tertiary</topic><topic>Signal Transduction - drug effects</topic><topic>Substrate Specificity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pan, Jonathan L.</creatorcontrib><creatorcontrib>Sliskovic, Inga</creatorcontrib><creatorcontrib>Bardwell, James C.A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pan, Jonathan L.</au><au>Sliskovic, Inga</au><au>Bardwell, James C.A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mutants in DsbB that Appear to Redirect Oxidation through the Disulfide Isomerization Pathway</atitle><jtitle>Journal of molecular biology</jtitle><addtitle>J Mol Biol</addtitle><date>2008-04-11</date><risdate>2008</risdate><volume>377</volume><issue>5</issue><spage>1433</spage><epage>1442</epage><pages>1433-1442</pages><issn>0022-2836</issn><eissn>1089-8638</eissn><abstract>Disulfide bond formation occurs in secreted proteins in
Escherichia coli when the disulfide oxidoreductase DsbA, a soluble periplasmic protein, nonspecifically transfers a disulfide to a substrate protein. The catalytic disulfide of DsbA is regenerated by the inner-membrane protein DsbB. To help identify the specificity determinants in DsbB and to understand the nature of the kinetic barrier preventing direct oxidation of newly secreted proteins by DsbB, we imposed selective pressure to find novel mutations in DsbB that would function to bypass the need for the disulfide carrier DsbA. We found a series of mutations localized to a short horizontal α-helix anchored near the outer surface of the inner membrane of DsbB that eliminated the need for DsbA. These mutations changed hydrophobic residues into nonhydrophobic residues. We hypothesize that these mutations may act by decreasing the affinity of this α-helix to the membrane. The DsbB mutants were dependent on the disulfide oxidoreductase DsbC, a soluble periplasmic thiol–disulfide isomerase, for complementation. DsbB is not normally able to oxidize DsbC, possibly due to a steric clash that occurs between DsbC and the membrane adjacent to DsbB. DsbC must be in the reduced form to function as an isomerase. In contrast, DsbA must remain oxidized to function as an oxidizing thiol–disulfide oxidoreductase. The lack of interaction that normally exists between DsbB and DsbC appears to provide a means to separate the DsbA–DsbB oxidation pathway and the DsbC–DsbD isomerization pathway. Our mutants in DsbB may act by redirecting oxidant flow to take place through the isomerization pathway.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>18325532</pmid><doi>10.1016/j.jmb.2008.01.058</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Bacterial Proteins - chemistry Bacterial Proteins - genetics Bacterial Proteins - metabolism Cadmium - pharmacology disulfide bond formation Disulfides - chemistry Disulfides - metabolism DsbA DsbB DsbC Escherichia coli Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - chemistry Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Glutathione - metabolism Isomerism Membrane Proteins - chemistry Membrane Proteins - genetics Membrane Proteins - metabolism Models, Molecular Mutation Oxidation-Reduction Protein Disulfide-Isomerases - chemistry Protein Disulfide-Isomerases - genetics Protein Disulfide-Isomerases - metabolism Protein Folding Protein Structure, Secondary Protein Structure, Tertiary Signal Transduction - drug effects Substrate Specificity |
title | Mutants in DsbB that Appear to Redirect Oxidation through the Disulfide Isomerization Pathway |
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