Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity

α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example...

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Veröffentlicht in:Protein science 2003-10, Vol.12 (10), p.2141-2149
Hauptverfasser: Bessler, Cornelius, Schmitt, Jutta, Maurer, Karl‐Heinz, Schmid, Rolf D.
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Schmitt, Jutta
Maurer, Karl‐Heinz
Schmid, Rolf D.
description α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.
doi_str_mv 10.1110/ps.0384403
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Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. 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Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.</description><subject>alpha-Amylases - chemistry</subject><subject>alpha-Amylases - genetics</subject><subject>alpha-Amylases - metabolism</subject><subject>Amino Acid Sequence</subject><subject>BAA, α‐amylase from Bacillus amyloliquefaciens</subject><subject>Bacillus - enzymology</subject><subject>Bacillus - genetics</subject><subject>BLA, α‐amylase from Bacillus licheniformis</subject><subject>BRP, Bacteriocin release protein</subject><subject>BstA, α‐amylase from Bacillus stearothermophilus</subject><subject>Directed evolution</subject><subject>Directed Molecular Evolution</subject><subject>DNA Mutational Analysis</subject><subject>DNA Shuffling</subject><subject>Escherichia coli - genetics</subject><subject>high throughput assay</subject><subject>Hydrogen-Ion Concentration</subject><subject>LAMY, α‐amylase from Bacillus sp. KSM‐1376</subject><subject>Models, Molecular</subject><subject>Mutagenesis, Site-Directed - genetics</subject><subject>pH activity profile</subject><subject>Protein Engineering</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - genetics</subject><subject>Recombinant Proteins - metabolism</subject><subject>S707, α‐amylase from Bacillus strain #707</subject><subject>Sequence Homology, Amino Acid</subject><subject>specific activity</subject><subject>Transformation, Bacterial - genetics</subject><subject>TS‐23, α‐amylase from Bacillus sp. 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TS‐23</topic><topic>α‐amylase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bessler, Cornelius</creatorcontrib><creatorcontrib>Schmitt, Jutta</creatorcontrib><creatorcontrib>Maurer, Karl‐Heinz</creatorcontrib><creatorcontrib>Schmid, Rolf D.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Protein science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bessler, Cornelius</au><au>Schmitt, Jutta</au><au>Maurer, Karl‐Heinz</au><au>Schmid, Rolf D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity</atitle><jtitle>Protein science</jtitle><addtitle>Protein Sci</addtitle><date>2003-10</date><risdate>2003</risdate><volume>12</volume><issue>10</issue><spage>2141</spage><epage>2149</epage><pages>2141-2149</pages><issn>0961-8368</issn><eissn>1469-896X</eissn><abstract>α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. 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Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.</abstract><cop>Bristol</cop><pub>Cold Spring Harbor Laboratory Press</pub><pmid>14500872</pmid><doi>10.1110/ps.0384403</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
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source Wiley Free Content; MEDLINE; Wiley Online Library Journals Frontfile Complete; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry
subjects alpha-Amylases - chemistry
alpha-Amylases - genetics
alpha-Amylases - metabolism
Amino Acid Sequence
BAA, α‐amylase from Bacillus amyloliquefaciens
Bacillus - enzymology
Bacillus - genetics
BLA, α‐amylase from Bacillus licheniformis
BRP, Bacteriocin release protein
BstA, α‐amylase from Bacillus stearothermophilus
Directed evolution
Directed Molecular Evolution
DNA Mutational Analysis
DNA Shuffling
Escherichia coli - genetics
high throughput assay
Hydrogen-Ion Concentration
LAMY, α‐amylase from Bacillus sp. KSM‐1376
Models, Molecular
Mutagenesis, Site-Directed - genetics
pH activity profile
Protein Engineering
Recombinant Proteins - chemistry
Recombinant Proteins - genetics
Recombinant Proteins - metabolism
S707, α‐amylase from Bacillus strain #707
Sequence Homology, Amino Acid
specific activity
Transformation, Bacterial - genetics
TS‐23, α‐amylase from Bacillus sp. TS‐23
α‐amylase
title Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity
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