Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity
α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example...
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Veröffentlicht in: | Protein science 2003-10, Vol.12 (10), p.2141-2149 |
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description | α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases. |
doi_str_mv | 10.1110/ps.0384403 |
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Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.</description><identifier>ISSN: 0961-8368</identifier><identifier>EISSN: 1469-896X</identifier><identifier>DOI: 10.1110/ps.0384403</identifier><identifier>PMID: 14500872</identifier><language>eng</language><publisher>Bristol: Cold Spring Harbor Laboratory Press</publisher><subject>alpha-Amylases - chemistry ; alpha-Amylases - genetics ; alpha-Amylases - metabolism ; Amino Acid Sequence ; BAA, α‐amylase from Bacillus amyloliquefaciens ; Bacillus - enzymology ; Bacillus - genetics ; BLA, α‐amylase from Bacillus licheniformis ; BRP, Bacteriocin release protein ; BstA, α‐amylase from Bacillus stearothermophilus ; Directed evolution ; Directed Molecular Evolution ; DNA Mutational Analysis ; DNA Shuffling ; Escherichia coli - genetics ; high throughput assay ; Hydrogen-Ion Concentration ; LAMY, α‐amylase from Bacillus sp. KSM‐1376 ; Models, Molecular ; Mutagenesis, Site-Directed - genetics ; pH activity profile ; Protein Engineering ; Recombinant Proteins - chemistry ; Recombinant Proteins - genetics ; Recombinant Proteins - metabolism ; S707, α‐amylase from Bacillus strain #707 ; Sequence Homology, Amino Acid ; specific activity ; Transformation, Bacterial - genetics ; TS‐23, α‐amylase from Bacillus sp. 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Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.</description><subject>alpha-Amylases - chemistry</subject><subject>alpha-Amylases - genetics</subject><subject>alpha-Amylases - metabolism</subject><subject>Amino Acid Sequence</subject><subject>BAA, α‐amylase from Bacillus amyloliquefaciens</subject><subject>Bacillus - enzymology</subject><subject>Bacillus - genetics</subject><subject>BLA, α‐amylase from Bacillus licheniformis</subject><subject>BRP, Bacteriocin release protein</subject><subject>BstA, α‐amylase from Bacillus stearothermophilus</subject><subject>Directed evolution</subject><subject>Directed Molecular Evolution</subject><subject>DNA Mutational Analysis</subject><subject>DNA Shuffling</subject><subject>Escherichia coli - genetics</subject><subject>high throughput assay</subject><subject>Hydrogen-Ion Concentration</subject><subject>LAMY, α‐amylase from Bacillus sp. KSM‐1376</subject><subject>Models, Molecular</subject><subject>Mutagenesis, Site-Directed - genetics</subject><subject>pH activity profile</subject><subject>Protein Engineering</subject><subject>Recombinant Proteins - chemistry</subject><subject>Recombinant Proteins - genetics</subject><subject>Recombinant Proteins - metabolism</subject><subject>S707, α‐amylase from Bacillus strain #707</subject><subject>Sequence Homology, Amino Acid</subject><subject>specific activity</subject><subject>Transformation, Bacterial - genetics</subject><subject>TS‐23, α‐amylase from Bacillus sp. TS‐23</subject><subject>α‐amylase</subject><issn>0961-8368</issn><issn>1469-896X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kM1KAzEUhYMotlY3PoBkLUzNnWTSGReC1J8KBUUquAuZTKaNzB_JtKU7H8FX8UV8CJ_ElBZ_Nq4unPPdc7kHoWMgfQAgZ43rExozRugO6gLjSRAn_HkXdUnCIYgpjzvowLkXQgiDkO6jDrCIkHgQdlF5ZaxWrc6wXtTFvDV1hescS5xKr1ojC_zx_vn6JstVIZ0-x5N6Ka2nq5mslF9rRt5ttM1rW64VLKsMz8x0pi12jVYmNwr7LLMw7eoQ7eWycPpoO3vo6eZ6MhwF4_vbu-HlOFCUAgQZY1HkX9IsHkiSpAmnWUZUmrBcMy4jxULJcq_kNOUMCNckVoSD5-Taoz10sclt5mmpM6Wr1spCNNaU0q5ELY3461RmJqb1QoSU84SGPuB0E6Bs7ZzV-fcuELEuXTRObEv38Mnvaz_otmUPwAZYmkKv_okSD4_3EIbAgH4BH-uRAg</recordid><startdate>200310</startdate><enddate>200310</enddate><creator>Bessler, Cornelius</creator><creator>Schmitt, Jutta</creator><creator>Maurer, Karl‐Heinz</creator><creator>Schmid, Rolf D.</creator><general>Cold Spring Harbor Laboratory Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>200310</creationdate><title>Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity</title><author>Bessler, Cornelius ; Schmitt, Jutta ; Maurer, Karl‐Heinz ; Schmid, Rolf D.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3311-d4455038e487a09b963dd0cb94fe46a5c42a4fd0cf3b64106e08c061963ac42a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2003</creationdate><topic>alpha-Amylases - chemistry</topic><topic>alpha-Amylases - genetics</topic><topic>alpha-Amylases - metabolism</topic><topic>Amino Acid Sequence</topic><topic>BAA, α‐amylase from Bacillus amyloliquefaciens</topic><topic>Bacillus - enzymology</topic><topic>Bacillus - genetics</topic><topic>BLA, α‐amylase from Bacillus licheniformis</topic><topic>BRP, Bacteriocin release protein</topic><topic>BstA, α‐amylase from Bacillus stearothermophilus</topic><topic>Directed evolution</topic><topic>Directed Molecular Evolution</topic><topic>DNA Mutational Analysis</topic><topic>DNA Shuffling</topic><topic>Escherichia coli - genetics</topic><topic>high throughput assay</topic><topic>Hydrogen-Ion Concentration</topic><topic>LAMY, α‐amylase from Bacillus sp. KSM‐1376</topic><topic>Models, Molecular</topic><topic>Mutagenesis, Site-Directed - genetics</topic><topic>pH activity profile</topic><topic>Protein Engineering</topic><topic>Recombinant Proteins - chemistry</topic><topic>Recombinant Proteins - genetics</topic><topic>Recombinant Proteins - metabolism</topic><topic>S707, α‐amylase from Bacillus strain #707</topic><topic>Sequence Homology, Amino Acid</topic><topic>specific activity</topic><topic>Transformation, Bacterial - genetics</topic><topic>TS‐23, α‐amylase from Bacillus sp. TS‐23</topic><topic>α‐amylase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bessler, Cornelius</creatorcontrib><creatorcontrib>Schmitt, Jutta</creatorcontrib><creatorcontrib>Maurer, Karl‐Heinz</creatorcontrib><creatorcontrib>Schmid, Rolf D.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Protein science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bessler, Cornelius</au><au>Schmitt, Jutta</au><au>Maurer, Karl‐Heinz</au><au>Schmid, Rolf D.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity</atitle><jtitle>Protein science</jtitle><addtitle>Protein Sci</addtitle><date>2003-10</date><risdate>2003</risdate><volume>12</volume><issue>10</issue><spage>2141</spage><epage>2149</epage><pages>2141-2149</pages><issn>0961-8368</issn><eissn>1469-896X</eissn><abstract>α‐Amylases, in particular, microbial α‐amylases, are widely used in industrial processes such as starch liquefaction and pulp processes, and more recently in detergency. Due to the need for α‐amylases with high specific activity and activity at alkaline pH, which are critical parameters, for example, for the use in detergents, we have enhanced the α‐amylase from Bacillus amyloliquefaciens (BAA). The genes coding for the wild‐type BAA and the mutants BAA S201N and BAA N297D were subjected to error‐prone PCR and gene shuffling. For the screening of mutants we developed a novel, reliable assay suitable for high throughput screening based on the Phadebas assay. One mutant (BAA 42) has an optimal activity at pH 7, corresponding to a shift of one pH unit compared to the wild type. BAA 42 is active over a broader pH range than the wild type, resulting in a 5‐fold higher activity at pH 10. In addition, the activity in periplasmic extracts and the specific activity increased 4‐ and 1.5‐fold, respectively. Another mutant (BAA 29) possesses a wild‐type‐like pH profile but possesses a 40‐fold higher activity in periplasmic extracts and a 9‐fold higher specific activity. The comparison of the amino acid sequences of these two mutants with other homologous microbial α‐amylases revealed the mutation of the highly conserved residues W194R, S197P, and A230V. In addition, three further mutations were found K406R, N414S, and E356D, the latter being present in other bacterial α‐amylases.</abstract><cop>Bristol</cop><pub>Cold Spring Harbor Laboratory Press</pub><pmid>14500872</pmid><doi>10.1110/ps.0384403</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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subjects | alpha-Amylases - chemistry alpha-Amylases - genetics alpha-Amylases - metabolism Amino Acid Sequence BAA, α‐amylase from Bacillus amyloliquefaciens Bacillus - enzymology Bacillus - genetics BLA, α‐amylase from Bacillus licheniformis BRP, Bacteriocin release protein BstA, α‐amylase from Bacillus stearothermophilus Directed evolution Directed Molecular Evolution DNA Mutational Analysis DNA Shuffling Escherichia coli - genetics high throughput assay Hydrogen-Ion Concentration LAMY, α‐amylase from Bacillus sp. KSM‐1376 Models, Molecular Mutagenesis, Site-Directed - genetics pH activity profile Protein Engineering Recombinant Proteins - chemistry Recombinant Proteins - genetics Recombinant Proteins - metabolism S707, α‐amylase from Bacillus strain #707 Sequence Homology, Amino Acid specific activity Transformation, Bacterial - genetics TS‐23, α‐amylase from Bacillus sp. TS‐23 α‐amylase |
title | Directed evolution of a bacterial α‐amylase: Toward enhanced pH‐performance and higher specific activity |
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