Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance
Broadly, this research aims to improve the outbreak detection performance and, therefore, the cost effectiveness of automated syndromic surveillance systems by building novel, recombinant temporal aberration detection algorithms from components of previously developed detectors. This study decompose...
Gespeichert in:
Veröffentlicht in: | Journal of the American Medical Informatics Association : JAMIA 2008-01, Vol.15 (1), p.77-86 |
---|---|
Hauptverfasser: | , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 86 |
---|---|
container_issue | 1 |
container_start_page | 77 |
container_title | Journal of the American Medical Informatics Association : JAMIA |
container_volume | 15 |
creator | Murphy, Sean Patrick Burkom, Howard |
description | Broadly, this research aims to improve the outbreak detection performance and, therefore, the cost effectiveness of automated syndromic surveillance systems by building novel, recombinant temporal aberration detection algorithms from components of previously developed detectors.
This study decomposes existing temporal aberration detection algorithms into two sequential stages and investigates the individual impact of each stage on outbreak detection performance. The data forecasting stage (Stage 1) generates predictions of time series values a certain number of time steps in the future based on historical data. The anomaly measure stage (Stage 2) compares features of this prediction to corresponding features of the actual time series to compute a statistical anomaly measure. A Monte Carlo simulation procedure is then used to examine the recombinant algorithms’ ability to detect synthetic aberrations injected into authentic syndromic time series.
New methods obtained with procedural components of published, sometimes widely used, algorithms were compared to the known methods using authentic datasets with plausible stochastic injected signals. Performance improvements were found for some of the recombinant methods, and these improvements were consistent over a range of data types, outbreak types, and outbreak sizes. For gradual outbreaks, the WEWD MovAvg7+WEWD Z-Score recombinant algorithm performed best; for sudden outbreaks, the HW+WEWD Z-Score performed best.
This decomposition was found not only to yield valuable insight into the effects of the aberration detection algorithms but also to produce novel combinations of data forecasters and anomaly measures with enhanced detection performance. |
doi_str_mv | 10.1197/jamia.M2587 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2274875</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S1067502707002678</els_id><sourcerecordid>70105124</sourcerecordid><originalsourceid>FETCH-LOGICAL-c456t-3124493a3d8c90e910e7697bc950b7482d664314f378067dc9f885c5de4186b73</originalsourceid><addsrcrecordid>eNqFkUtr3DAUhUVIyatZdR-8yiY4lWQ9N4FJMmkLKaVlCtkJWb7OKNjWRPIM9N9X8yBpIZCVLrofh3PuQegTwZeEaPn5yfbeXn6nXMk9dEQ4laWW7GE_z1jIkmMqD9FxSk8YE0ErfoAOidRMCsKO0M9f4EJf-8EOYzGDfhGi7YpJDTHa0YehuIUR3GaadI8h-nHep6INsZgOczs4aIprH9IyrsB33frjI_rQ2i7B6e49Qb_vprObr-X9jy_fbib3pWNcjGVFKGO6slWjnMagCQYptKyd5riWTNFGCFYR1lZS5RiN061S3PEGGFGiltUJutrqLpZ1D42DYczWzSL63sY_Jlhv_t8Mfm4ew8pQmuUlzwLnO4EYnpeQRtP75GCdAsIyGYkJ5tnluyDFjCkhVQYvtqCLIaUI7Ysbgs26K7Ppymy6yvTZvwFe2V05GeBbAPIZVx6iSc7D-uY-5k5ME_ybwn8BXUej9w</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>20448678</pqid></control><display><type>article</type><title>Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance</title><source>MEDLINE</source><source>Oxford University Press Journals All Titles (1996-Current)</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Murphy, Sean Patrick ; Burkom, Howard</creator><creatorcontrib>Murphy, Sean Patrick ; Burkom, Howard</creatorcontrib><description>Broadly, this research aims to improve the outbreak detection performance and, therefore, the cost effectiveness of automated syndromic surveillance systems by building novel, recombinant temporal aberration detection algorithms from components of previously developed detectors.
This study decomposes existing temporal aberration detection algorithms into two sequential stages and investigates the individual impact of each stage on outbreak detection performance. The data forecasting stage (Stage 1) generates predictions of time series values a certain number of time steps in the future based on historical data. The anomaly measure stage (Stage 2) compares features of this prediction to corresponding features of the actual time series to compute a statistical anomaly measure. A Monte Carlo simulation procedure is then used to examine the recombinant algorithms’ ability to detect synthetic aberrations injected into authentic syndromic time series.
New methods obtained with procedural components of published, sometimes widely used, algorithms were compared to the known methods using authentic datasets with plausible stochastic injected signals. Performance improvements were found for some of the recombinant methods, and these improvements were consistent over a range of data types, outbreak types, and outbreak sizes. For gradual outbreaks, the WEWD MovAvg7+WEWD Z-Score recombinant algorithm performed best; for sudden outbreaks, the HW+WEWD Z-Score performed best.
This decomposition was found not only to yield valuable insight into the effects of the aberration detection algorithms but also to produce novel combinations of data forecasters and anomaly measures with enhanced detection performance.</description><identifier>ISSN: 1067-5027</identifier><identifier>EISSN: 1527-974X</identifier><identifier>DOI: 10.1197/jamia.M2587</identifier><identifier>PMID: 17947614</identifier><language>eng</language><publisher>England: Elsevier Inc</publisher><subject>Algorithms ; Bioterrorism - prevention & control ; Communicable Diseases - diagnosis ; Communicable Diseases - epidemiology ; Disease Outbreaks - prevention & control ; Epidemiologic Measurements ; Humans ; Population Surveillance - methods ; Public Health Informatics - methods ; Regression Analysis ; Research Paper ; Time</subject><ispartof>Journal of the American Medical Informatics Association : JAMIA, 2008-01, Vol.15 (1), p.77-86</ispartof><rights>2008 J Am Med Inform Assoc.</rights><rights>Copyright © 2008, American Medical Informatics Association 2008</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c456t-3124493a3d8c90e910e7697bc950b7482d664314f378067dc9f885c5de4186b73</citedby><cites>FETCH-LOGICAL-c456t-3124493a3d8c90e910e7697bc950b7482d664314f378067dc9f885c5de4186b73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2274875/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2274875/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17947614$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Murphy, Sean Patrick</creatorcontrib><creatorcontrib>Burkom, Howard</creatorcontrib><title>Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance</title><title>Journal of the American Medical Informatics Association : JAMIA</title><addtitle>J Am Med Inform Assoc</addtitle><description>Broadly, this research aims to improve the outbreak detection performance and, therefore, the cost effectiveness of automated syndromic surveillance systems by building novel, recombinant temporal aberration detection algorithms from components of previously developed detectors.
This study decomposes existing temporal aberration detection algorithms into two sequential stages and investigates the individual impact of each stage on outbreak detection performance. The data forecasting stage (Stage 1) generates predictions of time series values a certain number of time steps in the future based on historical data. The anomaly measure stage (Stage 2) compares features of this prediction to corresponding features of the actual time series to compute a statistical anomaly measure. A Monte Carlo simulation procedure is then used to examine the recombinant algorithms’ ability to detect synthetic aberrations injected into authentic syndromic time series.
New methods obtained with procedural components of published, sometimes widely used, algorithms were compared to the known methods using authentic datasets with plausible stochastic injected signals. Performance improvements were found for some of the recombinant methods, and these improvements were consistent over a range of data types, outbreak types, and outbreak sizes. For gradual outbreaks, the WEWD MovAvg7+WEWD Z-Score recombinant algorithm performed best; for sudden outbreaks, the HW+WEWD Z-Score performed best.
This decomposition was found not only to yield valuable insight into the effects of the aberration detection algorithms but also to produce novel combinations of data forecasters and anomaly measures with enhanced detection performance.</description><subject>Algorithms</subject><subject>Bioterrorism - prevention & control</subject><subject>Communicable Diseases - diagnosis</subject><subject>Communicable Diseases - epidemiology</subject><subject>Disease Outbreaks - prevention & control</subject><subject>Epidemiologic Measurements</subject><subject>Humans</subject><subject>Population Surveillance - methods</subject><subject>Public Health Informatics - methods</subject><subject>Regression Analysis</subject><subject>Research Paper</subject><subject>Time</subject><issn>1067-5027</issn><issn>1527-974X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUtr3DAUhUVIyatZdR-8yiY4lWQ9N4FJMmkLKaVlCtkJWb7OKNjWRPIM9N9X8yBpIZCVLrofh3PuQegTwZeEaPn5yfbeXn6nXMk9dEQ4laWW7GE_z1jIkmMqD9FxSk8YE0ErfoAOidRMCsKO0M9f4EJf-8EOYzGDfhGi7YpJDTHa0YehuIUR3GaadI8h-nHep6INsZgOczs4aIprH9IyrsB33frjI_rQ2i7B6e49Qb_vprObr-X9jy_fbib3pWNcjGVFKGO6slWjnMagCQYptKyd5riWTNFGCFYR1lZS5RiN061S3PEGGFGiltUJutrqLpZ1D42DYczWzSL63sY_Jlhv_t8Mfm4ew8pQmuUlzwLnO4EYnpeQRtP75GCdAsIyGYkJ5tnluyDFjCkhVQYvtqCLIaUI7Ysbgs26K7Ppymy6yvTZvwFe2V05GeBbAPIZVx6iSc7D-uY-5k5ME_ybwn8BXUej9w</recordid><startdate>200801</startdate><enddate>200801</enddate><creator>Murphy, Sean Patrick</creator><creator>Burkom, Howard</creator><general>Elsevier Inc</general><general>American Medical Informatics Association</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>200801</creationdate><title>Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance</title><author>Murphy, Sean Patrick ; Burkom, Howard</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c456t-3124493a3d8c90e910e7697bc950b7482d664314f378067dc9f885c5de4186b73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Algorithms</topic><topic>Bioterrorism - prevention & control</topic><topic>Communicable Diseases - diagnosis</topic><topic>Communicable Diseases - epidemiology</topic><topic>Disease Outbreaks - prevention & control</topic><topic>Epidemiologic Measurements</topic><topic>Humans</topic><topic>Population Surveillance - methods</topic><topic>Public Health Informatics - methods</topic><topic>Regression Analysis</topic><topic>Research Paper</topic><topic>Time</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Murphy, Sean Patrick</creatorcontrib><creatorcontrib>Burkom, Howard</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Murphy, Sean Patrick</au><au>Burkom, Howard</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance</atitle><jtitle>Journal of the American Medical Informatics Association : JAMIA</jtitle><addtitle>J Am Med Inform Assoc</addtitle><date>2008-01</date><risdate>2008</risdate><volume>15</volume><issue>1</issue><spage>77</spage><epage>86</epage><pages>77-86</pages><issn>1067-5027</issn><eissn>1527-974X</eissn><abstract>Broadly, this research aims to improve the outbreak detection performance and, therefore, the cost effectiveness of automated syndromic surveillance systems by building novel, recombinant temporal aberration detection algorithms from components of previously developed detectors.
This study decomposes existing temporal aberration detection algorithms into two sequential stages and investigates the individual impact of each stage on outbreak detection performance. The data forecasting stage (Stage 1) generates predictions of time series values a certain number of time steps in the future based on historical data. The anomaly measure stage (Stage 2) compares features of this prediction to corresponding features of the actual time series to compute a statistical anomaly measure. A Monte Carlo simulation procedure is then used to examine the recombinant algorithms’ ability to detect synthetic aberrations injected into authentic syndromic time series.
New methods obtained with procedural components of published, sometimes widely used, algorithms were compared to the known methods using authentic datasets with plausible stochastic injected signals. Performance improvements were found for some of the recombinant methods, and these improvements were consistent over a range of data types, outbreak types, and outbreak sizes. For gradual outbreaks, the WEWD MovAvg7+WEWD Z-Score recombinant algorithm performed best; for sudden outbreaks, the HW+WEWD Z-Score performed best.
This decomposition was found not only to yield valuable insight into the effects of the aberration detection algorithms but also to produce novel combinations of data forecasters and anomaly measures with enhanced detection performance.</abstract><cop>England</cop><pub>Elsevier Inc</pub><pmid>17947614</pmid><doi>10.1197/jamia.M2587</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1067-5027 |
ispartof | Journal of the American Medical Informatics Association : JAMIA, 2008-01, Vol.15 (1), p.77-86 |
issn | 1067-5027 1527-974X |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2274875 |
source | MEDLINE; Oxford University Press Journals All Titles (1996-Current); EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Algorithms Bioterrorism - prevention & control Communicable Diseases - diagnosis Communicable Diseases - epidemiology Disease Outbreaks - prevention & control Epidemiologic Measurements Humans Population Surveillance - methods Public Health Informatics - methods Regression Analysis Research Paper Time |
title | Recombinant Temporal Aberration Detection Algorithms for Enhanced Biosurveillance |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T06%3A21%3A57IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Recombinant%20Temporal%20Aberration%20Detection%20Algorithms%20for%20Enhanced%20Biosurveillance&rft.jtitle=Journal%20of%20the%20American%20Medical%20Informatics%20Association%20:%20JAMIA&rft.au=Murphy,%20Sean%20Patrick&rft.date=2008-01&rft.volume=15&rft.issue=1&rft.spage=77&rft.epage=86&rft.pages=77-86&rft.issn=1067-5027&rft.eissn=1527-974X&rft_id=info:doi/10.1197/jamia.M2587&rft_dat=%3Cproquest_pubme%3E70105124%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=20448678&rft_id=info:pmid/17947614&rft_els_id=S1067502707002678&rfr_iscdi=true |