Loopholes and missing links in protein modeling

This paper provides an unbiased comparison of four commercially available programs for loop sampling, Prime, Modeler, ICM, and Sybyl, each of which uses a different modeling protocol. The study assesses the quality of results and examines the relative strengths and weaknesses of each method. The set...

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Veröffentlicht in:	Protein science 2007-09, Vol.16 (9), p.1999-2012
Hauptverfasser:	Rossi, Karen A., Weigelt, Carolyn A., Nayeem, Akbar, Krystek, Stanley R.
Format:	Artikel
Sprache:	eng
Schlagworte:	Algorithms Amino Acid Sequence Crystallography, X-Ray Databases, Protein Disulfides - chemistry homology modeling Hydrogen - chemistry Hydrogen-Ion Concentration loop modeling Models, Molecular Oligopeptides - chemistry Protein Conformation protein structure Protein Structure, Secondary Software
Online-Zugang:	Volltext
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