Secondary structure and NMR assignments of bacillus circulans xylanase

Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samp...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Protein science 1996-06, Vol.5 (6), p.1118-1135
Hauptverfasser: Plesniak, Leigh A., Mcintosh, Lawrence P., Wakarchuk, Warren W.
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1135
container_issue 6
container_start_page 1118
container_title Protein science
container_volume 5
creator Plesniak, Leigh A.
Mcintosh, Lawrence P.
Wakarchuk, Warren W.
description Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.
doi_str_mv 10.1002/pro.5560050614
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2143425</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>78272286</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</originalsourceid><addsrcrecordid>eNqFkDFPwzAQhS0EKqWwsiFlYks524kTL0ioooBUKCogsVmOY5egJC52AvTfk6pVKRPT6fTuvrv3EDrFMMQA5GLh7DCOGUAMDEd7qI8jxsOUs9d91AfOcJhSlh6iI-_fASDChPZQL00YwRHto_GTVrbOpVsGvnGtalqnA1nnwcP9LJDeF_O60nXjA2uCTKqiLFsfqMKptpS1D76XXZFeH6MDI0uvTzZ1gF7G18-j23AyvbkbXU1CFdE4CkkSg1HAJYA0iWIqZoTEjEZE5ZlhnGLFM4KJyXmSsFxyBhRSog3nGTWc0QG6XHMXbVbpXHWvOVmKhSuqzoKwshB_lbp4E3P7KVZuIxJ3gPMNwNmPVvtGVIVXuuxsaNt6kaQkISRdXRquB5Wz3jtttkcwiFXyXW_Fb_Ldwtnua9vxTdSdztf6V1Hq5T808Tib7rB_ANMmkQY</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>78272286</pqid></control><display><type>article</type><title>Secondary structure and NMR assignments of bacillus circulans xylanase</title><source>Wiley Free Content</source><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Plesniak, Leigh A. ; Mcintosh, Lawrence P. ; Wakarchuk, Warren W.</creator><creatorcontrib>Plesniak, Leigh A. ; Mcintosh, Lawrence P. ; Wakarchuk, Warren W.</creatorcontrib><description>Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</description><identifier>ISSN: 0961-8368</identifier><identifier>EISSN: 1469-896X</identifier><identifier>DOI: 10.1002/pro.5560050614</identifier><identifier>PMID: 8762143</identifier><language>eng</language><publisher>Bristol: Cold Spring Harbor Laboratory Press</publisher><subject>amide‐aromatic hydrogen bond ; Amino Acid Sequence ; Bacillus - enzymology ; Carbon Isotopes ; chemical shift index ; Hydrogen Bonding ; Magnetic Resonance Spectroscopy ; Molecular Sequence Data ; Nitrogen Isotopes ; NMR assignments ; Protein Structure, Secondary ; secondary structure ; Tritium ; Tryptophan - chemistry ; Xylan Endo-1,3-beta-Xylosidase ; xylanase ; Xylosidases - chemistry ; β‐glycanase</subject><ispartof>Protein science, 1996-06, Vol.5 (6), p.1118-1135</ispartof><rights>Copyright © 1996 The Protein Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</citedby><cites>FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2143425/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2143425/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,1411,1427,27901,27902,45550,45551,46384,46808,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8762143$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Plesniak, Leigh A.</creatorcontrib><creatorcontrib>Mcintosh, Lawrence P.</creatorcontrib><creatorcontrib>Wakarchuk, Warren W.</creatorcontrib><title>Secondary structure and NMR assignments of bacillus circulans xylanase</title><title>Protein science</title><addtitle>Protein Sci</addtitle><description>Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</description><subject>amide‐aromatic hydrogen bond</subject><subject>Amino Acid Sequence</subject><subject>Bacillus - enzymology</subject><subject>Carbon Isotopes</subject><subject>chemical shift index</subject><subject>Hydrogen Bonding</subject><subject>Magnetic Resonance Spectroscopy</subject><subject>Molecular Sequence Data</subject><subject>Nitrogen Isotopes</subject><subject>NMR assignments</subject><subject>Protein Structure, Secondary</subject><subject>secondary structure</subject><subject>Tritium</subject><subject>Tryptophan - chemistry</subject><subject>Xylan Endo-1,3-beta-Xylosidase</subject><subject>xylanase</subject><subject>Xylosidases - chemistry</subject><subject>β‐glycanase</subject><issn>0961-8368</issn><issn>1469-896X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDFPwzAQhS0EKqWwsiFlYks524kTL0ioooBUKCogsVmOY5egJC52AvTfk6pVKRPT6fTuvrv3EDrFMMQA5GLh7DCOGUAMDEd7qI8jxsOUs9d91AfOcJhSlh6iI-_fASDChPZQL00YwRHto_GTVrbOpVsGvnGtalqnA1nnwcP9LJDeF_O60nXjA2uCTKqiLFsfqMKptpS1D76XXZFeH6MDI0uvTzZ1gF7G18-j23AyvbkbXU1CFdE4CkkSg1HAJYA0iWIqZoTEjEZE5ZlhnGLFM4KJyXmSsFxyBhRSog3nGTWc0QG6XHMXbVbpXHWvOVmKhSuqzoKwshB_lbp4E3P7KVZuIxJ3gPMNwNmPVvtGVIVXuuxsaNt6kaQkISRdXRquB5Wz3jtttkcwiFXyXW_Fb_Ldwtnua9vxTdSdztf6V1Hq5T808Tib7rB_ANMmkQY</recordid><startdate>199606</startdate><enddate>199606</enddate><creator>Plesniak, Leigh A.</creator><creator>Mcintosh, Lawrence P.</creator><creator>Wakarchuk, Warren W.</creator><general>Cold Spring Harbor Laboratory Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>199606</creationdate><title>Secondary structure and NMR assignments of bacillus circulans xylanase</title><author>Plesniak, Leigh A. ; Mcintosh, Lawrence P. ; Wakarchuk, Warren W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><topic>amide‐aromatic hydrogen bond</topic><topic>Amino Acid Sequence</topic><topic>Bacillus - enzymology</topic><topic>Carbon Isotopes</topic><topic>chemical shift index</topic><topic>Hydrogen Bonding</topic><topic>Magnetic Resonance Spectroscopy</topic><topic>Molecular Sequence Data</topic><topic>Nitrogen Isotopes</topic><topic>NMR assignments</topic><topic>Protein Structure, Secondary</topic><topic>secondary structure</topic><topic>Tritium</topic><topic>Tryptophan - chemistry</topic><topic>Xylan Endo-1,3-beta-Xylosidase</topic><topic>xylanase</topic><topic>Xylosidases - chemistry</topic><topic>β‐glycanase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Plesniak, Leigh A.</creatorcontrib><creatorcontrib>Mcintosh, Lawrence P.</creatorcontrib><creatorcontrib>Wakarchuk, Warren W.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Protein science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Plesniak, Leigh A.</au><au>Mcintosh, Lawrence P.</au><au>Wakarchuk, Warren W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Secondary structure and NMR assignments of bacillus circulans xylanase</atitle><jtitle>Protein science</jtitle><addtitle>Protein Sci</addtitle><date>1996-06</date><risdate>1996</risdate><volume>5</volume><issue>6</issue><spage>1118</spage><epage>1135</epage><pages>1118-1135</pages><issn>0961-8368</issn><eissn>1469-896X</eissn><abstract>Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</abstract><cop>Bristol</cop><pub>Cold Spring Harbor Laboratory Press</pub><pmid>8762143</pmid><doi>10.1002/pro.5560050614</doi><tpages>18</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0961-8368
ispartof Protein science, 1996-06, Vol.5 (6), p.1118-1135
issn 0961-8368
1469-896X
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_2143425
source Wiley Free Content; MEDLINE; Wiley Online Library Journals Frontfile Complete; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; Free Full-Text Journals in Chemistry
subjects amide‐aromatic hydrogen bond
Amino Acid Sequence
Bacillus - enzymology
Carbon Isotopes
chemical shift index
Hydrogen Bonding
Magnetic Resonance Spectroscopy
Molecular Sequence Data
Nitrogen Isotopes
NMR assignments
Protein Structure, Secondary
secondary structure
Tritium
Tryptophan - chemistry
Xylan Endo-1,3-beta-Xylosidase
xylanase
Xylosidases - chemistry
β‐glycanase
title Secondary structure and NMR assignments of bacillus circulans xylanase
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-05T02%3A36%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Secondary%20structure%20and%20NMR%20assignments%20of%20bacillus%20circulans%20xylanase&rft.jtitle=Protein%20science&rft.au=Plesniak,%20Leigh%20A.&rft.date=1996-06&rft.volume=5&rft.issue=6&rft.spage=1118&rft.epage=1135&rft.pages=1118-1135&rft.issn=0961-8368&rft.eissn=1469-896X&rft_id=info:doi/10.1002/pro.5560050614&rft_dat=%3Cproquest_pubme%3E78272286%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=78272286&rft_id=info:pmid/8762143&rfr_iscdi=true