Secondary structure and NMR assignments of bacillus circulans xylanase
Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samp...
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Veröffentlicht in: | Protein science 1996-06, Vol.5 (6), p.1118-1135 |
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description | Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase. |
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The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</description><identifier>ISSN: 0961-8368</identifier><identifier>EISSN: 1469-896X</identifier><identifier>DOI: 10.1002/pro.5560050614</identifier><identifier>PMID: 8762143</identifier><language>eng</language><publisher>Bristol: Cold Spring Harbor Laboratory Press</publisher><subject>amide‐aromatic hydrogen bond ; Amino Acid Sequence ; Bacillus - enzymology ; Carbon Isotopes ; chemical shift index ; Hydrogen Bonding ; Magnetic Resonance Spectroscopy ; Molecular Sequence Data ; Nitrogen Isotopes ; NMR assignments ; Protein Structure, Secondary ; secondary structure ; Tritium ; Tryptophan - chemistry ; Xylan Endo-1,3-beta-Xylosidase ; xylanase ; Xylosidases - chemistry ; β‐glycanase</subject><ispartof>Protein science, 1996-06, Vol.5 (6), p.1118-1135</ispartof><rights>Copyright © 1996 The Protein Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</citedby><cites>FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2143425/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC2143425/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,1411,1427,27901,27902,45550,45551,46384,46808,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8762143$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Plesniak, Leigh A.</creatorcontrib><creatorcontrib>Mcintosh, Lawrence P.</creatorcontrib><creatorcontrib>Wakarchuk, Warren W.</creatorcontrib><title>Secondary structure and NMR assignments of bacillus circulans xylanase</title><title>Protein science</title><addtitle>Protein Sci</addtitle><description>Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</description><subject>amide‐aromatic hydrogen bond</subject><subject>Amino Acid Sequence</subject><subject>Bacillus - enzymology</subject><subject>Carbon Isotopes</subject><subject>chemical shift index</subject><subject>Hydrogen Bonding</subject><subject>Magnetic Resonance Spectroscopy</subject><subject>Molecular Sequence Data</subject><subject>Nitrogen Isotopes</subject><subject>NMR assignments</subject><subject>Protein Structure, Secondary</subject><subject>secondary structure</subject><subject>Tritium</subject><subject>Tryptophan - chemistry</subject><subject>Xylan Endo-1,3-beta-Xylosidase</subject><subject>xylanase</subject><subject>Xylosidases - chemistry</subject><subject>β‐glycanase</subject><issn>0961-8368</issn><issn>1469-896X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkDFPwzAQhS0EKqWwsiFlYks524kTL0ioooBUKCogsVmOY5egJC52AvTfk6pVKRPT6fTuvrv3EDrFMMQA5GLh7DCOGUAMDEd7qI8jxsOUs9d91AfOcJhSlh6iI-_fASDChPZQL00YwRHto_GTVrbOpVsGvnGtalqnA1nnwcP9LJDeF_O60nXjA2uCTKqiLFsfqMKptpS1D76XXZFeH6MDI0uvTzZ1gF7G18-j23AyvbkbXU1CFdE4CkkSg1HAJYA0iWIqZoTEjEZE5ZlhnGLFM4KJyXmSsFxyBhRSog3nGTWc0QG6XHMXbVbpXHWvOVmKhSuqzoKwshB_lbp4E3P7KVZuIxJ3gPMNwNmPVvtGVIVXuuxsaNt6kaQkISRdXRquB5Wz3jtttkcwiFXyXW_Fb_Ldwtnua9vxTdSdztf6V1Hq5T808Tib7rB_ANMmkQY</recordid><startdate>199606</startdate><enddate>199606</enddate><creator>Plesniak, Leigh A.</creator><creator>Mcintosh, Lawrence P.</creator><creator>Wakarchuk, Warren W.</creator><general>Cold Spring Harbor Laboratory Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>199606</creationdate><title>Secondary structure and NMR assignments of bacillus circulans xylanase</title><author>Plesniak, Leigh A. ; Mcintosh, Lawrence P. ; Wakarchuk, Warren W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4354-2750fc09a00af7c6c562256342cdbf6931c9b212fd9776da9603082ef99b3f963</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><topic>amide‐aromatic hydrogen bond</topic><topic>Amino Acid Sequence</topic><topic>Bacillus - enzymology</topic><topic>Carbon Isotopes</topic><topic>chemical shift index</topic><topic>Hydrogen Bonding</topic><topic>Magnetic Resonance Spectroscopy</topic><topic>Molecular Sequence Data</topic><topic>Nitrogen Isotopes</topic><topic>NMR assignments</topic><topic>Protein Structure, Secondary</topic><topic>secondary structure</topic><topic>Tritium</topic><topic>Tryptophan - chemistry</topic><topic>Xylan Endo-1,3-beta-Xylosidase</topic><topic>xylanase</topic><topic>Xylosidases - chemistry</topic><topic>β‐glycanase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Plesniak, Leigh A.</creatorcontrib><creatorcontrib>Mcintosh, Lawrence P.</creatorcontrib><creatorcontrib>Wakarchuk, Warren W.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Protein science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Plesniak, Leigh A.</au><au>Mcintosh, Lawrence P.</au><au>Wakarchuk, Warren W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Secondary structure and NMR assignments of bacillus circulans xylanase</atitle><jtitle>Protein science</jtitle><addtitle>Protein Sci</addtitle><date>1996-06</date><risdate>1996</risdate><volume>5</volume><issue>6</issue><spage>1118</spage><epage>1135</epage><pages>1118-1135</pages><issn>0961-8368</issn><eissn>1469-896X</eissn><abstract>Bacillus circulans xylanase (BCX) is a member of the family of low molecular weight endo‐β‐(1,4)‐xylanases. The main‐chain 1H, 13C, and 15N resonances of this 20.4‐kDa enzyme were assigned using heteronuclear NMR experiments recorded on a combination of selectively and uniformly labeled protein samples. Using chemical shift, NOE, J coupling, and amide hydrogen exchange information, 14 β‐strands, arranged in a network of three β‐sheets, and a single α‐helix were identified in BCX. The NMR‐derived secondary structure and β‐sheet topology agree closely with that observed in the crystal structure of this protein. The HN of Ile 118 has a strongly upfield‐shifted resonance at 4.03 ppm, indicative of a potential amide‐aromatic hydrogen bond to the indole ring of Trp 71. This interaction, which is conserved in all low molecular weight xylanases of known structure, may play an important role in establishing the active site conformation of these enzymes. Following hen egg white and bacteriophage T4 lysozymes, B. circulans xylanase represents the third family of β‐glycanases for which extensive NMR assignments have been reported. These assignments provide the background for detailed studies of the mechanism of carbohydrate recognition and hydrolysis by this bacterial xylanase.</abstract><cop>Bristol</cop><pub>Cold Spring Harbor Laboratory Press</pub><pmid>8762143</pmid><doi>10.1002/pro.5560050614</doi><tpages>18</tpages><oa>free_for_read</oa></addata></record> |
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subjects | amide‐aromatic hydrogen bond Amino Acid Sequence Bacillus - enzymology Carbon Isotopes chemical shift index Hydrogen Bonding Magnetic Resonance Spectroscopy Molecular Sequence Data Nitrogen Isotopes NMR assignments Protein Structure, Secondary secondary structure Tritium Tryptophan - chemistry Xylan Endo-1,3-beta-Xylosidase xylanase Xylosidases - chemistry β‐glycanase |
title | Secondary structure and NMR assignments of bacillus circulans xylanase |
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