Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de
Functional glycomics, the scientific attempt to identify and assign functions to all glycan molecules synthesized by an organism, is an emerging field of science. In recent years, several databases have been started, all aiming to support deciphering the biological function of carbohydrates. However...
Gespeichert in:
| Veröffentlicht in: | Nucleic acids research 2007-01, Vol.35 (suppl-1), p.D280-D286 |
|---|---|
| Hauptverfasser: | , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | D286 |
|---|---|
| container_issue | suppl-1 |
| container_start_page | D280 |
| container_title | Nucleic acids research |
| container_volume | 35 |
| creator | Toukach, Philip Joshi, Hiren J Ranzinger, René Knirel, Yuri von der Lieth, Claus-W. |
| description | Functional glycomics, the scientific attempt to identify and assign functions to all glycan molecules synthesized by an organism, is an emerging field of science. In recent years, several databases have been started, all aiming to support deciphering the biological function of carbohydrates. However, diverse encoding and storage schemes are in use amongst these databases, significantly hampering the interchange of data. The mutual online access between the Bacterial Carbohydrate Structure DataBase (BCSDB) and the GLYCOSCIENCES.de portal, as a first reported attempt of a structure-based direct interconnection of two glyco-related databases is described. In this approach, users have to learn only one interface, will always have access to the latest data of both services, and will have the results of both searches presented in a consistent way. The establishment of this connection helped to find shortcomings and inconsistencies in the database design and functionality related to underlying data concepts and structural representations. For the maintenance of the databases, duplication of work can be easily avoided, and will hopefully lead to a better worldwide acceptance of both services within the community of glycoscienists. BCSDB is available at and the GLYCOSCIENCES.de portal at |
| doi_str_mv | 10.1093/nar/gkl883 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1899093</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>68408280</sourcerecordid><originalsourceid>FETCH-LOGICAL-c538t-631d03fc3dc562dff8d3b06264b27536d9de82f11d57b5b1f0e419953895db023</originalsourceid><addsrcrecordid>eNqFkstuEzEUhkcIRENhwwMgiwULpGl9mYuHRSU6hKYiShcBcdlYHvtM4nZiF9tD6dvwqDhKVAobVpZ8Pn_yOefPsucEHxHcsGMr_fHqauCcPcgmhFU0L5qKPswmmOEyJ7jgB9mTEC4xJgUpi8fZAakppqQqJtmv5Vp6Y1fI9ejG-UHfGA1ImxC96cYIGinpO7e-1V5GyD0McnupzcpEOSAPwY1eQXiDnB2MBaSctaCicXarjGtAp1JF8CbR7T0VWkY_qjh6QO9klKcyAJJWo7P51_Zi2Z5PF-10eaThafaol0OAZ_vzMPv0fvqxneXzi7Pz9u08VyXjMa8Y0Zj1imlVVlT3PdeswxWtio7WJat0o4HTnhBd1l3ZkR5DQZomvW1K3WHKDrOTnfd67DagFdjo5SCuvdlIfyucNOLvijVrsXI_BOFNk7aQBK_2Au--jxCi2JigYBikBTcGUfECc8rxf0GKa1rygiTw5T_gZRq2TVNITOqN0GYLvd5ByrsQPPR3XyZYbOMhUjzELh4JfnG_yT_oPg8JyHdACgD8vKtLfyWqmtWlmH35Jhbzerb8_GEuFuw3pcXJDQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>200621291</pqid></control><display><type>article</type><title>Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Access via Oxford University Press (Open Access Collection)</source><source>Oxford University Press Journals All Titles (1996-Current)</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Toukach, Philip ; Joshi, Hiren J ; Ranzinger, René ; Knirel, Yuri ; von der Lieth, Claus-W.</creator><creatorcontrib>Toukach, Philip ; Joshi, Hiren J ; Ranzinger, René ; Knirel, Yuri ; von der Lieth, Claus-W.</creatorcontrib><description>Functional glycomics, the scientific attempt to identify and assign functions to all glycan molecules synthesized by an organism, is an emerging field of science. In recent years, several databases have been started, all aiming to support deciphering the biological function of carbohydrates. However, diverse encoding and storage schemes are in use amongst these databases, significantly hampering the interchange of data. The mutual online access between the Bacterial Carbohydrate Structure DataBase (BCSDB) and the GLYCOSCIENCES.de portal, as a first reported attempt of a structure-based direct interconnection of two glyco-related databases is described. In this approach, users have to learn only one interface, will always have access to the latest data of both services, and will have the results of both searches presented in a consistent way. The establishment of this connection helped to find shortcomings and inconsistencies in the database design and functionality related to underlying data concepts and structural representations. For the maintenance of the databases, duplication of work can be easily avoided, and will hopefully lead to a better worldwide acceptance of both services within the community of glycoscienists. BCSDB is available at and the GLYCOSCIENCES.de portal at</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gkl883</identifier><identifier>PMID: 17202164</identifier><identifier>CODEN: NARHAD</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Animals ; Bacteria ; Carbohydrate Conformation ; Carbohydrate Sequence ; Databases, Factual ; Internet ; Mammals - metabolism ; Polysaccharides - biosynthesis ; Polysaccharides - chemistry ; Polysaccharides, Bacterial - biosynthesis ; Polysaccharides, Bacterial - chemistry ; Systems Integration ; User-Computer Interface</subject><ispartof>Nucleic acids research, 2007-01, Vol.35 (suppl-1), p.D280-D286</ispartof><rights>Copyright Oxford University Press(England) Jan 2007</rights><rights>2006 The Author(s) 2006</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c538t-631d03fc3dc562dff8d3b06264b27536d9de82f11d57b5b1f0e419953895db023</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899093/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899093/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,729,782,786,866,887,27931,27932,53798,53800</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17202164$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Toukach, Philip</creatorcontrib><creatorcontrib>Joshi, Hiren J</creatorcontrib><creatorcontrib>Ranzinger, René</creatorcontrib><creatorcontrib>Knirel, Yuri</creatorcontrib><creatorcontrib>von der Lieth, Claus-W.</creatorcontrib><title>Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de</title><title>Nucleic acids research</title><addtitle>Nucleic Acids Res</addtitle><description>Functional glycomics, the scientific attempt to identify and assign functions to all glycan molecules synthesized by an organism, is an emerging field of science. In recent years, several databases have been started, all aiming to support deciphering the biological function of carbohydrates. However, diverse encoding and storage schemes are in use amongst these databases, significantly hampering the interchange of data. The mutual online access between the Bacterial Carbohydrate Structure DataBase (BCSDB) and the GLYCOSCIENCES.de portal, as a first reported attempt of a structure-based direct interconnection of two glyco-related databases is described. In this approach, users have to learn only one interface, will always have access to the latest data of both services, and will have the results of both searches presented in a consistent way. The establishment of this connection helped to find shortcomings and inconsistencies in the database design and functionality related to underlying data concepts and structural representations. For the maintenance of the databases, duplication of work can be easily avoided, and will hopefully lead to a better worldwide acceptance of both services within the community of glycoscienists. BCSDB is available at and the GLYCOSCIENCES.de portal at</description><subject>Animals</subject><subject>Bacteria</subject><subject>Carbohydrate Conformation</subject><subject>Carbohydrate Sequence</subject><subject>Databases, Factual</subject><subject>Internet</subject><subject>Mammals - metabolism</subject><subject>Polysaccharides - biosynthesis</subject><subject>Polysaccharides - chemistry</subject><subject>Polysaccharides, Bacterial - biosynthesis</subject><subject>Polysaccharides, Bacterial - chemistry</subject><subject>Systems Integration</subject><subject>User-Computer Interface</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkstuEzEUhkcIRENhwwMgiwULpGl9mYuHRSU6hKYiShcBcdlYHvtM4nZiF9tD6dvwqDhKVAobVpZ8Pn_yOefPsucEHxHcsGMr_fHqauCcPcgmhFU0L5qKPswmmOEyJ7jgB9mTEC4xJgUpi8fZAakppqQqJtmv5Vp6Y1fI9ejG-UHfGA1ImxC96cYIGinpO7e-1V5GyD0McnupzcpEOSAPwY1eQXiDnB2MBaSctaCicXarjGtAp1JF8CbR7T0VWkY_qjh6QO9klKcyAJJWo7P51_Zi2Z5PF-10eaThafaol0OAZ_vzMPv0fvqxneXzi7Pz9u08VyXjMa8Y0Zj1imlVVlT3PdeswxWtio7WJat0o4HTnhBd1l3ZkR5DQZomvW1K3WHKDrOTnfd67DagFdjo5SCuvdlIfyucNOLvijVrsXI_BOFNk7aQBK_2Au--jxCi2JigYBikBTcGUfECc8rxf0GKa1rygiTw5T_gZRq2TVNITOqN0GYLvd5ByrsQPPR3XyZYbOMhUjzELh4JfnG_yT_oPg8JyHdACgD8vKtLfyWqmtWlmH35Jhbzerb8_GEuFuw3pcXJDQ</recordid><startdate>20070101</startdate><enddate>20070101</enddate><creator>Toukach, Philip</creator><creator>Joshi, Hiren J</creator><creator>Ranzinger, René</creator><creator>Knirel, Yuri</creator><creator>von der Lieth, Claus-W.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7T7</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20070101</creationdate><title>Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de</title><author>Toukach, Philip ; Joshi, Hiren J ; Ranzinger, René ; Knirel, Yuri ; von der Lieth, Claus-W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c538t-631d03fc3dc562dff8d3b06264b27536d9de82f11d57b5b1f0e419953895db023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Animals</topic><topic>Bacteria</topic><topic>Carbohydrate Conformation</topic><topic>Carbohydrate Sequence</topic><topic>Databases, Factual</topic><topic>Internet</topic><topic>Mammals - metabolism</topic><topic>Polysaccharides - biosynthesis</topic><topic>Polysaccharides - chemistry</topic><topic>Polysaccharides, Bacterial - biosynthesis</topic><topic>Polysaccharides, Bacterial - chemistry</topic><topic>Systems Integration</topic><topic>User-Computer Interface</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Toukach, Philip</creatorcontrib><creatorcontrib>Joshi, Hiren J</creatorcontrib><creatorcontrib>Ranzinger, René</creatorcontrib><creatorcontrib>Knirel, Yuri</creatorcontrib><creatorcontrib>von der Lieth, Claus-W.</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Toukach, Philip</au><au>Joshi, Hiren J</au><au>Ranzinger, René</au><au>Knirel, Yuri</au><au>von der Lieth, Claus-W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucleic Acids Res</addtitle><date>2007-01-01</date><risdate>2007</risdate><volume>35</volume><issue>suppl-1</issue><spage>D280</spage><epage>D286</epage><pages>D280-D286</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><coden>NARHAD</coden><abstract>Functional glycomics, the scientific attempt to identify and assign functions to all glycan molecules synthesized by an organism, is an emerging field of science. In recent years, several databases have been started, all aiming to support deciphering the biological function of carbohydrates. However, diverse encoding and storage schemes are in use amongst these databases, significantly hampering the interchange of data. The mutual online access between the Bacterial Carbohydrate Structure DataBase (BCSDB) and the GLYCOSCIENCES.de portal, as a first reported attempt of a structure-based direct interconnection of two glyco-related databases is described. In this approach, users have to learn only one interface, will always have access to the latest data of both services, and will have the results of both searches presented in a consistent way. The establishment of this connection helped to find shortcomings and inconsistencies in the database design and functionality related to underlying data concepts and structural representations. For the maintenance of the databases, duplication of work can be easily avoided, and will hopefully lead to a better worldwide acceptance of both services within the community of glycoscienists. BCSDB is available at and the GLYCOSCIENCES.de portal at</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>17202164</pmid><doi>10.1093/nar/gkl883</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 2007-01, Vol.35 (suppl-1), p.D280-D286 |
| issn | 0305-1048 1362-4962 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1899093 |
| source | MEDLINE; DOAJ Directory of Open Access Journals; Access via Oxford University Press (Open Access Collection); Oxford University Press Journals All Titles (1996-Current); PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Animals Bacteria Carbohydrate Conformation Carbohydrate Sequence Databases, Factual Internet Mammals - metabolism Polysaccharides - biosynthesis Polysaccharides - chemistry Polysaccharides, Bacterial - biosynthesis Polysaccharides, Bacterial - chemistry Systems Integration User-Computer Interface |
| title | Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-04T04%3A03%3A43IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Sharing%20of%20worldwide%20distributed%20carbohydrate-related%20digital%20resources:%20online%20connection%20of%20the%20Bacterial%20Carbohydrate%20Structure%20DataBase%20and%20GLYCOSCIENCES.de&rft.jtitle=Nucleic%20acids%20research&rft.au=Toukach,%20Philip&rft.date=2007-01-01&rft.volume=35&rft.issue=suppl-1&rft.spage=D280&rft.epage=D286&rft.pages=D280-D286&rft.issn=0305-1048&rft.eissn=1362-4962&rft.coden=NARHAD&rft_id=info:doi/10.1093/nar/gkl883&rft_dat=%3Cproquest_pubme%3E68408280%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=200621291&rft_id=info:pmid/17202164&rfr_iscdi=true |