S locus F-box brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear
Although recent findings suggest that the F-box genes SFB/SLF control pollen-part S specificity in the S-RNase-based gametophytic self-incompatibility (GSI) system, how these genes operate in the system is unknown, and functional variation of pollen S genes in different species has been reported. He...
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| Veröffentlicht in: | Genetics (Austin) 2007-04, Vol.175 (4), p.1869-1881 |
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| creator | Sassa, H Kakui, H Miyamoto, M Suzuki, Y Hanada, T Ushijima, K Kusaba, M Hirano, H Koba, T |
| description | Although recent findings suggest that the F-box genes SFB/SLF control pollen-part S specificity in the S-RNase-based gametophytic self-incompatibility (GSI) system, how these genes operate in the system is unknown, and functional variation of pollen S genes in different species has been reported. Here, we analyzed the S locus of two species of Maloideae: apple (Malus domestica) and Japanese pear (Pyrus pyrifolia). The sequencing of a 317-kb region of the apple S9 haplotype revealed two similar F-box genes. Homologous sequences were isolated from different haplotypes of apple and Japanese pear, and they were found to be polymorphic genes derived from the S locus. Since each S haplotype contains two or three related genes, the genes were named SFBB for S locus F-box brothers. The SFBB genes are specifically expressed in pollen, and variable regions of the SFBB genes are under positive selection. In a style-specific mutant S haplotype of Japanese pear, the SFBB genes are retained. Apart from their multiplicity, SFBB genes meet the expected characteristics of pollen S. The unique multiplicity of SFBB genes as the pollen S candidate is discussed in the context of mechanistic variation in the S-RNase-based GSI system. |
| doi_str_mv | 10.1534/genetics.106.068858 |
| format | Article |
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Here, we analyzed the S locus of two species of Maloideae: apple (Malus domestica) and Japanese pear (Pyrus pyrifolia). The sequencing of a 317-kb region of the apple S9 haplotype revealed two similar F-box genes. Homologous sequences were isolated from different haplotypes of apple and Japanese pear, and they were found to be polymorphic genes derived from the S locus. Since each S haplotype contains two or three related genes, the genes were named SFBB for S locus F-box brothers. The SFBB genes are specifically expressed in pollen, and variable regions of the SFBB genes are under positive selection. In a style-specific mutant S haplotype of Japanese pear, the SFBB genes are retained. Apart from their multiplicity, SFBB genes meet the expected characteristics of pollen S. The unique multiplicity of SFBB genes as the pollen S candidate is discussed in the context of mechanistic variation in the S-RNase-based GSI system.</description><identifier>ISSN: 0016-6731</identifier><identifier>ISSN: 1943-2631</identifier><identifier>EISSN: 1943-2631</identifier><identifier>DOI: 10.1534/genetics.106.068858</identifier><identifier>PMID: 17237509</identifier><identifier>CODEN: GENTAE</identifier><language>eng</language><publisher>United States: Genetics Soc America</publisher><subject>Amino Acid Sequence ; apples ; Base Sequence ; Chromosomes, Artificial, Bacterial - genetics ; DNA, Plant - genetics ; F-box genes ; F-Box Proteins - genetics ; Gene expression ; genes ; Genes, Plant ; Genetics ; Haplotypes ; Investigations ; Japan ; loci ; Malus - genetics ; Malus domestica ; Molecular Sequence Data ; Mutation ; nucleotide sequences ; Phylogeny ; plant fertility ; Plant Proteins - genetics ; Pollen ; Pollen - genetics ; Polymorphism, Genetic ; Pyrus - genetics ; Pyrus pyrifolia ; ribonucleases ; Ribonucleases - genetics ; S locus ; selfing ; Sequence Homology, Amino Acid ; SFBB genes</subject><ispartof>Genetics (Austin), 2007-04, Vol.175 (4), p.1869-1881</ispartof><rights>Copyright Genetics Society of America Apr 2007</rights><rights>Copyright © 2007 by the Genetics Society of America 2007</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c517t-bcd274dcfc9b7a5b0c86bfe8a23d7a2c54f85905a8f3b977c51c747e19d252023</citedby><cites>FETCH-LOGICAL-c517t-bcd274dcfc9b7a5b0c86bfe8a23d7a2c54f85905a8f3b977c51c747e19d252023</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17237509$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sassa, H</creatorcontrib><creatorcontrib>Kakui, H</creatorcontrib><creatorcontrib>Miyamoto, M</creatorcontrib><creatorcontrib>Suzuki, Y</creatorcontrib><creatorcontrib>Hanada, T</creatorcontrib><creatorcontrib>Ushijima, K</creatorcontrib><creatorcontrib>Kusaba, M</creatorcontrib><creatorcontrib>Hirano, H</creatorcontrib><creatorcontrib>Koba, T</creatorcontrib><title>S locus F-box brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear</title><title>Genetics (Austin)</title><addtitle>Genetics</addtitle><description>Although recent findings suggest that the F-box genes SFB/SLF control pollen-part S specificity in the S-RNase-based gametophytic self-incompatibility (GSI) system, how these genes operate in the system is unknown, and functional variation of pollen S genes in different species has been reported. Here, we analyzed the S locus of two species of Maloideae: apple (Malus domestica) and Japanese pear (Pyrus pyrifolia). The sequencing of a 317-kb region of the apple S9 haplotype revealed two similar F-box genes. Homologous sequences were isolated from different haplotypes of apple and Japanese pear, and they were found to be polymorphic genes derived from the S locus. Since each S haplotype contains two or three related genes, the genes were named SFBB for S locus F-box brothers. The SFBB genes are specifically expressed in pollen, and variable regions of the SFBB genes are under positive selection. In a style-specific mutant S haplotype of Japanese pear, the SFBB genes are retained. Apart from their multiplicity, SFBB genes meet the expected characteristics of pollen S. The unique multiplicity of SFBB genes as the pollen S candidate is discussed in the context of mechanistic variation in the S-RNase-based GSI system.</description><subject>Amino Acid Sequence</subject><subject>apples</subject><subject>Base Sequence</subject><subject>Chromosomes, Artificial, Bacterial - genetics</subject><subject>DNA, Plant - genetics</subject><subject>F-box genes</subject><subject>F-Box Proteins - genetics</subject><subject>Gene expression</subject><subject>genes</subject><subject>Genes, Plant</subject><subject>Genetics</subject><subject>Haplotypes</subject><subject>Investigations</subject><subject>Japan</subject><subject>loci</subject><subject>Malus - genetics</subject><subject>Malus domestica</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>nucleotide sequences</subject><subject>Phylogeny</subject><subject>plant fertility</subject><subject>Plant Proteins - genetics</subject><subject>Pollen</subject><subject>Pollen - genetics</subject><subject>Polymorphism, Genetic</subject><subject>Pyrus - genetics</subject><subject>Pyrus pyrifolia</subject><subject>ribonucleases</subject><subject>Ribonucleases - genetics</subject><subject>S locus</subject><subject>selfing</subject><subject>Sequence Homology, Amino Acid</subject><subject>SFBB genes</subject><issn>0016-6731</issn><issn>1943-2631</issn><issn>1943-2631</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkk-P1SAUxRujcZ6jn8BEiQtd9XkpBVoXJmbi-CeTuHjOmlBKX5nQgtBa39ovLi9946gbVyTwOyf3cG6WPcWwxZSUr_d61JNRcYuBbYFVFa3uZRtclyQvGMH3sw0AZjnjBJ9lj2K8AQBW0-phdoZ5QTiFepP93CHr1BzRZd64H6gJbup1iG_QMNvJeKuRHFvknbV6zKPXynRGneDjABEtZurRDvXSWzcdvL6jkuowuOB7E4eIzIikvzX8LL1MYo28luFx9qCTNuonp_M8u758__XiY3715cOni3dXuaKYT3mj2oKXrepU3XBJG1AVazpdyYK0XBaKll1Fa6Cy6khTc55Uipdc47otaAEFOc_err5-bgbdKj1OQVrhgxlkOAgnjfj7ZTS92LvvAleUYlImg5cng-C-zTpOYjBRaWtTFjdHwaGEGqdy_gemklgqgCTwxT_gjZvDmH5BFLjEJQCtE0RWSAUXY9Dd75ExiOMqiNtVSBdMrKuQVM_-THunOXWfgFcr0Jt9v5igRRyktQnHYlkWzKkoU3R2JJ-vZCedkPtgorjeFYAJQEU450B-ASzRyvg</recordid><startdate>20070401</startdate><enddate>20070401</enddate><creator>Sassa, H</creator><creator>Kakui, H</creator><creator>Miyamoto, M</creator><creator>Suzuki, Y</creator><creator>Hanada, T</creator><creator>Ushijima, K</creator><creator>Kusaba, M</creator><creator>Hirano, H</creator><creator>Koba, T</creator><general>Genetics Soc America</general><general>Genetics Society of America</general><general>Copyright © 2007 by the Genetics Society of America</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>4T-</scope><scope>4U-</scope><scope>7QP</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9-</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0R</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20070401</creationdate><title>S locus F-box brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear</title><author>Sassa, H ; Kakui, H ; Miyamoto, M ; Suzuki, Y ; Hanada, T ; Ushijima, K ; Kusaba, M ; Hirano, H ; Koba, T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c517t-bcd274dcfc9b7a5b0c86bfe8a23d7a2c54f85905a8f3b977c51c747e19d252023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2007</creationdate><topic>Amino Acid Sequence</topic><topic>apples</topic><topic>Base Sequence</topic><topic>Chromosomes, Artificial, Bacterial - genetics</topic><topic>DNA, Plant - genetics</topic><topic>F-box genes</topic><topic>F-Box Proteins - genetics</topic><topic>Gene expression</topic><topic>genes</topic><topic>Genes, Plant</topic><topic>Genetics</topic><topic>Haplotypes</topic><topic>Investigations</topic><topic>Japan</topic><topic>loci</topic><topic>Malus - genetics</topic><topic>Malus domestica</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>nucleotide sequences</topic><topic>Phylogeny</topic><topic>plant fertility</topic><topic>Plant Proteins - genetics</topic><topic>Pollen</topic><topic>Pollen - genetics</topic><topic>Polymorphism, Genetic</topic><topic>Pyrus - genetics</topic><topic>Pyrus pyrifolia</topic><topic>ribonucleases</topic><topic>Ribonucleases - genetics</topic><topic>S locus</topic><topic>selfing</topic><topic>Sequence Homology, Amino Acid</topic><topic>SFBB genes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sassa, H</creatorcontrib><creatorcontrib>Kakui, H</creatorcontrib><creatorcontrib>Miyamoto, M</creatorcontrib><creatorcontrib>Suzuki, Y</creatorcontrib><creatorcontrib>Hanada, T</creatorcontrib><creatorcontrib>Ushijima, K</creatorcontrib><creatorcontrib>Kusaba, M</creatorcontrib><creatorcontrib>Hirano, H</creatorcontrib><creatorcontrib>Koba, T</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Docstoc</collection><collection>University Readers</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>Consumer Health Database (Alumni Edition)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Consumer Health Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genetics (Austin)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sassa, H</au><au>Kakui, H</au><au>Miyamoto, M</au><au>Suzuki, Y</au><au>Hanada, T</au><au>Ushijima, K</au><au>Kusaba, M</au><au>Hirano, H</au><au>Koba, T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>S locus F-box brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear</atitle><jtitle>Genetics (Austin)</jtitle><addtitle>Genetics</addtitle><date>2007-04-01</date><risdate>2007</risdate><volume>175</volume><issue>4</issue><spage>1869</spage><epage>1881</epage><pages>1869-1881</pages><issn>0016-6731</issn><issn>1943-2631</issn><eissn>1943-2631</eissn><coden>GENTAE</coden><abstract>Although recent findings suggest that the F-box genes SFB/SLF control pollen-part S specificity in the S-RNase-based gametophytic self-incompatibility (GSI) system, how these genes operate in the system is unknown, and functional variation of pollen S genes in different species has been reported. Here, we analyzed the S locus of two species of Maloideae: apple (Malus domestica) and Japanese pear (Pyrus pyrifolia). The sequencing of a 317-kb region of the apple S9 haplotype revealed two similar F-box genes. Homologous sequences were isolated from different haplotypes of apple and Japanese pear, and they were found to be polymorphic genes derived from the S locus. Since each S haplotype contains two or three related genes, the genes were named SFBB for S locus F-box brothers. The SFBB genes are specifically expressed in pollen, and variable regions of the SFBB genes are under positive selection. In a style-specific mutant S haplotype of Japanese pear, the SFBB genes are retained. Apart from their multiplicity, SFBB genes meet the expected characteristics of pollen S. The unique multiplicity of SFBB genes as the pollen S candidate is discussed in the context of mechanistic variation in the S-RNase-based GSI system.</abstract><cop>United States</cop><pub>Genetics Soc America</pub><pmid>17237509</pmid><doi>10.1534/genetics.106.068858</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Genetics (Austin), 2007-04, Vol.175 (4), p.1869-1881 |
| issn | 0016-6731 1943-2631 1943-2631 |
| language | eng |
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| source | Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Amino Acid Sequence apples Base Sequence Chromosomes, Artificial, Bacterial - genetics DNA, Plant - genetics F-box genes F-Box Proteins - genetics Gene expression genes Genes, Plant Genetics Haplotypes Investigations Japan loci Malus - genetics Malus domestica Molecular Sequence Data Mutation nucleotide sequences Phylogeny plant fertility Plant Proteins - genetics Pollen Pollen - genetics Polymorphism, Genetic Pyrus - genetics Pyrus pyrifolia ribonucleases Ribonucleases - genetics S locus selfing Sequence Homology, Amino Acid SFBB genes |
| title | S locus F-box brothers: multiple and pollen-specific F-box genes with S haplotype-specific polymorphisms in apple and Japanese pear |
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