Stanford Microarray Database: implementation of new analysis tools and open source release of software
The Stanford Microarray Database (SMD; http://smd.stanford.edu/) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major microarray platforms, and is MIAME-supportive and can e...
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| Veröffentlicht in: | Nucleic acids research 2007-01, Vol.35 (suppl-1), p.D766-D770 |
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| container_end_page | D770 |
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| container_issue | suppl-1 |
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| container_title | Nucleic acids research |
| container_volume | 35 |
| creator | Demeter, Janos Beauheim, Catherine Gollub, Jeremy Hernandez-Boussard, Tina Jin, Heng Maier, Donald Matese, John C Nitzberg, Michael Wymore, Farrell Zachariah, Zachariah K Brown, Patrick O Sherlock, Gavin Ball, Catherine A |
| description | The Stanford Microarray Database (SMD; http://smd.stanford.edu/) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major microarray platforms, and is MIAME-supportive and can export or import MAGE-ML. The primary mission of SMD is to be a research tool that supports researchers from the point of data generation to data publication and dissemination, but it also provides unrestricted access to analysis tools and public data from 300 publications. In addition to supporting ongoing research, SMD makes its source code fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD. In this article, we describe several data analysis tools implemented in SMD and we discuss features of our software release. |
| doi_str_mv | 10.1093/nar/gkl1019 |
| format | Article |
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In this article, we describe several data analysis tools implemented in SMD and we discuss features of our software release.</description><subject>Animals</subject><subject>Databases, Genetic</subject><subject>Gene Expression Profiling</subject><subject>Humans</subject><subject>Internet</subject><subject>Mice</subject><subject>Oligonucleotide Array Sequence Analysis</subject><subject>Software</subject><subject>User-Computer Interface</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0ctv1DAQB2ALgehSOHEHn7hUoR4nfnFAgvIoUnlIpQL1Ys0mk8U0G2_tLGX_e1ztqsCpvljWfB7N6MfYYxDPQbj6cMR0uLgYQIC7w2ZQa1k1Tsu7bCZqoSoQjd1jD3L-KQQ0oJr7bA8MWKmlnrH-dMKxj6njH0ObIqaEG_4GJ5xjphc8LFcDLWmccApx5LHnI11xHHHY5JD5FOOQy7PjcUUjz3GdWuKJBiq_r3WO_XSFiR6yez0OmR7t7n129u7t16Pj6uTz-w9Hr06qtnFuqqwg0qQ76pRxTa-dslATzW1HZVVrnVI4N10rURkFnZY9oHZdY9oWhCFb77OX276r9XxJXVsmTzj4VQpLTBsfMfj_K2P44RfxlwdjoZzS4NmuQYqXa8qTX4bc0jDgSHGdvbaNUMraW6EEWaRWt0NRNjPaFXiwhSWHnBP1N2OD8NdJ-5K03yVd9JN_N_1rd9EWUG1ByBP9vqljuvDa1Eb54-_n_os8_yS_WetfF_9063uMHhcpZH92KgXUQphaadD1H4dtv-0</recordid><startdate>20070101</startdate><enddate>20070101</enddate><creator>Demeter, Janos</creator><creator>Beauheim, Catherine</creator><creator>Gollub, Jeremy</creator><creator>Hernandez-Boussard, Tina</creator><creator>Jin, Heng</creator><creator>Maier, Donald</creator><creator>Matese, John C</creator><creator>Nitzberg, Michael</creator><creator>Wymore, Farrell</creator><creator>Zachariah, Zachariah K</creator><creator>Brown, Patrick O</creator><creator>Sherlock, Gavin</creator><creator>Ball, Catherine A</creator><general>Oxford University Press</general><scope>FBQ</scope><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20070101</creationdate><title>Stanford Microarray Database: implementation of new analysis tools and open source release of software</title><author>Demeter, Janos ; 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| ispartof | Nucleic acids research, 2007-01, Vol.35 (suppl-1), p.D766-D770 |
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| language | eng |
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| source | Oxford Journals Open Access Collection; MEDLINE; DOAJ Directory of Open Access Journals; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Animals Databases, Genetic Gene Expression Profiling Humans Internet Mice Oligonucleotide Array Sequence Analysis Software User-Computer Interface |
| title | Stanford Microarray Database: implementation of new analysis tools and open source release of software |
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