Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: no evidence for genotype-phenotype correlation
Tuberous sclerosis complex is an inherited tumour suppressor syndrome, caused by a mutation in either the TSC1 or TSC2 gene. The disease is characterised by a broad phenotypic spectrum that can include seizures, mental retardation, renal dysfunction, and dermatological abnormalities. The TSC1 gene w...
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Veröffentlicht in: | Journal of medical genetics 1999-04, Vol.36 (4), p.285-289 |
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creator | van Slegtenhorst, Marjon Verhoef, Senno Tempelaars, Anita Bakker, Lida Wang, Qi Wessels, Marja Bakker, Remco Nellist, Mark Lindhout, Dick Halley, Dicky van den Ouweland, Ans |
description | Tuberous sclerosis complex is an inherited tumour suppressor syndrome, caused by a mutation in either the TSC1 or TSC2 gene. The disease is characterised by a broad phenotypic spectrum that can include seizures, mental retardation, renal dysfunction, and dermatological abnormalities. The TSC1 gene was recently identified and has 23 exons, spanning 45 kb of genomic DNA, and encoding an 8.6 kb mRNA. After screening all 21 coding exons in our collection of 225 unrelated patients, only 29 small mutations were detected, suggesting that TSC1 mutations are under-represented among TSC patients. Almost all TSC1 mutations were small changes leading to a truncated protein, except for a splice site mutation and two in frame deletions in exon 7 and exon 15. No clear difference was observed in the clinical phenotype of patients with an in frame deletion or a frameshift or nonsense mutation. We found the disease causing mutation in 13% of our unrelated set of TSC patients, with more than half of the mutations clustered in exons 15 and 17, and no obvious under-representation of mutations among sporadic cases. In conclusion, we find no support for a genotype-phenotype correlation for the group of TSC1 patients compared to the overall population of TSC patients. |
doi_str_mv | 10.1136/jmg.36.4.285 |
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The disease is characterised by a broad phenotypic spectrum that can include seizures, mental retardation, renal dysfunction, and dermatological abnormalities. The TSC1 gene was recently identified and has 23 exons, spanning 45 kb of genomic DNA, and encoding an 8.6 kb mRNA. After screening all 21 coding exons in our collection of 225 unrelated patients, only 29 small mutations were detected, suggesting that TSC1 mutations are under-represented among TSC patients. Almost all TSC1 mutations were small changes leading to a truncated protein, except for a splice site mutation and two in frame deletions in exon 7 and exon 15. No clear difference was observed in the clinical phenotype of patients with an in frame deletion or a frameshift or nonsense mutation. We found the disease causing mutation in 13% of our unrelated set of TSC patients, with more than half of the mutations clustered in exons 15 and 17, and no obvious under-representation of mutations among sporadic cases. In conclusion, we find no support for a genotype-phenotype correlation for the group of TSC1 patients compared to the overall population of TSC patients.</description><identifier>ISSN: 0022-2593</identifier><identifier>EISSN: 1468-6244</identifier><identifier>DOI: 10.1136/jmg.36.4.285</identifier><identifier>PMID: 10227394</identifier><identifier>CODEN: JMDGAE</identifier><language>eng</language><publisher>England: BMJ Publishing Group Ltd</publisher><subject>Adolescent ; Automation ; Blotting, Southern ; Child ; Child, Preschool ; Chromosomes ; Cloning ; Enzymes ; Genes ; Genotype ; genotype-phenotype correlation ; Humans ; Intellectual disabilities ; Middle Aged ; Mutation ; Mutation - genetics ; mutations ; Original ; Patients ; Phenotype ; Polymorphism, Single-Stranded Conformational ; Proteins ; Proteins - genetics ; Tuberous Sclerosis - genetics ; tuberous sclerosis complex ; Tumor Suppressor Proteins</subject><ispartof>Journal of medical genetics, 1999-04, Vol.36 (4), p.285-289</ispartof><rights>Journal of Medical Genetics</rights><rights>Copyright: 1999 Journal of Medical Genetics</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-b478t-845de6230faabb7318aec1a7aa19ff3e2e94bc0c0b4e588ee0e6bd7015a29a1f3</citedby><cites>FETCH-LOGICAL-b478t-845de6230faabb7318aec1a7aa19ff3e2e94bc0c0b4e588ee0e6bd7015a29a1f3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1734341/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1734341/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,724,777,781,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10227394$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>van Slegtenhorst, Marjon</creatorcontrib><creatorcontrib>Verhoef, Senno</creatorcontrib><creatorcontrib>Tempelaars, Anita</creatorcontrib><creatorcontrib>Bakker, Lida</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Wessels, Marja</creatorcontrib><creatorcontrib>Bakker, Remco</creatorcontrib><creatorcontrib>Nellist, Mark</creatorcontrib><creatorcontrib>Lindhout, Dick</creatorcontrib><creatorcontrib>Halley, Dicky</creatorcontrib><creatorcontrib>van den Ouweland, Ans</creatorcontrib><title>Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: no evidence for genotype-phenotype correlation</title><title>Journal of medical genetics</title><addtitle>J Med Genet</addtitle><description>Tuberous sclerosis complex is an inherited tumour suppressor syndrome, caused by a mutation in either the TSC1 or TSC2 gene. The disease is characterised by a broad phenotypic spectrum that can include seizures, mental retardation, renal dysfunction, and dermatological abnormalities. The TSC1 gene was recently identified and has 23 exons, spanning 45 kb of genomic DNA, and encoding an 8.6 kb mRNA. After screening all 21 coding exons in our collection of 225 unrelated patients, only 29 small mutations were detected, suggesting that TSC1 mutations are under-represented among TSC patients. Almost all TSC1 mutations were small changes leading to a truncated protein, except for a splice site mutation and two in frame deletions in exon 7 and exon 15. No clear difference was observed in the clinical phenotype of patients with an in frame deletion or a frameshift or nonsense mutation. We found the disease causing mutation in 13% of our unrelated set of TSC patients, with more than half of the mutations clustered in exons 15 and 17, and no obvious under-representation of mutations among sporadic cases. In conclusion, we find no support for a genotype-phenotype correlation for the group of TSC1 patients compared to the overall population of TSC patients.</description><subject>Adolescent</subject><subject>Automation</subject><subject>Blotting, Southern</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Chromosomes</subject><subject>Cloning</subject><subject>Enzymes</subject><subject>Genes</subject><subject>Genotype</subject><subject>genotype-phenotype correlation</subject><subject>Humans</subject><subject>Intellectual disabilities</subject><subject>Middle Aged</subject><subject>Mutation</subject><subject>Mutation - genetics</subject><subject>mutations</subject><subject>Original</subject><subject>Patients</subject><subject>Phenotype</subject><subject>Polymorphism, Single-Stranded Conformational</subject><subject>Proteins</subject><subject>Proteins - genetics</subject><subject>Tuberous Sclerosis - genetics</subject><subject>tuberous sclerosis complex</subject><subject>Tumor Suppressor Proteins</subject><issn>0022-2593</issn><issn>1468-6244</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kc1u1DAUhS0EokNhxxpZQiqbZvBf7IRFJRQBRWoBiTJby_HczGRI4mA7VfsMvHQ9ZFQVFqzulc7n46N7EHpJyZJSLt_u-s2Sy6VYsiJ_hBZUyCKTTIjHaEEIYxnLS36EnoWwI4RyReVTdESToHgpFuj35RRNbN1gOhxGsNFPPXYNjlvAV98rijcwAG4HbLB1W-fjXmQsx3Gqwbsp4GC7tIQ2JKAfO7jBYzKEIYZ3eHAYrts1DBZw4_zezMXbEbJxe9jSI--h-xPhOXrSmC7Ai8M8Rj8-friqzrOLr58-V-8vslqoImaFyNcgGSeNMXWtOC0MWGqUMbRsGg4MSlFbYkktIC8KAAKyXitCc8NKQxt-jM5m33Gqe1jblNWbTo--7Y2_1c60-m9laLd64641VVxwQZPBycHAu18ThKj7NljoOjNAOomWpWK5FCKBr_8Bd27y6dYheRWUyrKkLFGnM2XTHYOH5j4KJXrfsU4d6zSETh0n_NXD-A_gudQEZDPQhgg397rxP7VUXOX6y6rSl-ditaq-rfT-_zczX_e7_399B0XqweM</recordid><startdate>19990401</startdate><enddate>19990401</enddate><creator>van Slegtenhorst, Marjon</creator><creator>Verhoef, Senno</creator><creator>Tempelaars, Anita</creator><creator>Bakker, Lida</creator><creator>Wang, Qi</creator><creator>Wessels, Marja</creator><creator>Bakker, Remco</creator><creator>Nellist, Mark</creator><creator>Lindhout, Dick</creator><creator>Halley, Dicky</creator><creator>van den Ouweland, Ans</creator><general>BMJ Publishing Group Ltd</general><general>BMJ Publishing Group LTD</general><general>BMJ Group</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>BTHHO</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19990401</creationdate><title>Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: no evidence for genotype-phenotype correlation</title><author>van Slegtenhorst, Marjon ; Verhoef, Senno ; Tempelaars, Anita ; Bakker, Lida ; Wang, Qi ; Wessels, Marja ; Bakker, Remco ; Nellist, Mark ; Lindhout, Dick ; Halley, Dicky ; van den Ouweland, Ans</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b478t-845de6230faabb7318aec1a7aa19ff3e2e94bc0c0b4e588ee0e6bd7015a29a1f3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>Adolescent</topic><topic>Automation</topic><topic>Blotting, Southern</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Chromosomes</topic><topic>Cloning</topic><topic>Enzymes</topic><topic>Genes</topic><topic>Genotype</topic><topic>genotype-phenotype correlation</topic><topic>Humans</topic><topic>Intellectual disabilities</topic><topic>Middle Aged</topic><topic>Mutation</topic><topic>Mutation - genetics</topic><topic>mutations</topic><topic>Original</topic><topic>Patients</topic><topic>Phenotype</topic><topic>Polymorphism, Single-Stranded Conformational</topic><topic>Proteins</topic><topic>Proteins - genetics</topic><topic>Tuberous Sclerosis - genetics</topic><topic>tuberous sclerosis complex</topic><topic>Tumor Suppressor Proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>van Slegtenhorst, Marjon</creatorcontrib><creatorcontrib>Verhoef, Senno</creatorcontrib><creatorcontrib>Tempelaars, Anita</creatorcontrib><creatorcontrib>Bakker, Lida</creatorcontrib><creatorcontrib>Wang, Qi</creatorcontrib><creatorcontrib>Wessels, Marja</creatorcontrib><creatorcontrib>Bakker, Remco</creatorcontrib><creatorcontrib>Nellist, Mark</creatorcontrib><creatorcontrib>Lindhout, Dick</creatorcontrib><creatorcontrib>Halley, Dicky</creatorcontrib><creatorcontrib>van den Ouweland, Ans</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>BMJ Journals</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of medical genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>van Slegtenhorst, Marjon</au><au>Verhoef, Senno</au><au>Tempelaars, Anita</au><au>Bakker, Lida</au><au>Wang, Qi</au><au>Wessels, Marja</au><au>Bakker, Remco</au><au>Nellist, Mark</au><au>Lindhout, Dick</au><au>Halley, Dicky</au><au>van den Ouweland, Ans</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: no evidence for genotype-phenotype correlation</atitle><jtitle>Journal of medical genetics</jtitle><addtitle>J Med Genet</addtitle><date>1999-04-01</date><risdate>1999</risdate><volume>36</volume><issue>4</issue><spage>285</spage><epage>289</epage><pages>285-289</pages><issn>0022-2593</issn><eissn>1468-6244</eissn><coden>JMDGAE</coden><abstract>Tuberous sclerosis complex is an inherited tumour suppressor syndrome, caused by a mutation in either the TSC1 or TSC2 gene. The disease is characterised by a broad phenotypic spectrum that can include seizures, mental retardation, renal dysfunction, and dermatological abnormalities. The TSC1 gene was recently identified and has 23 exons, spanning 45 kb of genomic DNA, and encoding an 8.6 kb mRNA. After screening all 21 coding exons in our collection of 225 unrelated patients, only 29 small mutations were detected, suggesting that TSC1 mutations are under-represented among TSC patients. Almost all TSC1 mutations were small changes leading to a truncated protein, except for a splice site mutation and two in frame deletions in exon 7 and exon 15. No clear difference was observed in the clinical phenotype of patients with an in frame deletion or a frameshift or nonsense mutation. We found the disease causing mutation in 13% of our unrelated set of TSC patients, with more than half of the mutations clustered in exons 15 and 17, and no obvious under-representation of mutations among sporadic cases. In conclusion, we find no support for a genotype-phenotype correlation for the group of TSC1 patients compared to the overall population of TSC patients.</abstract><cop>England</cop><pub>BMJ Publishing Group Ltd</pub><pmid>10227394</pmid><doi>10.1136/jmg.36.4.285</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adolescent Automation Blotting, Southern Child Child, Preschool Chromosomes Cloning Enzymes Genes Genotype genotype-phenotype correlation Humans Intellectual disabilities Middle Aged Mutation Mutation - genetics mutations Original Patients Phenotype Polymorphism, Single-Stranded Conformational Proteins Proteins - genetics Tuberous Sclerosis - genetics tuberous sclerosis complex Tumor Suppressor Proteins |
title | Mutational spectrum of the TSC1 gene in a cohort of 225 tuberous sclerosis complex patients: no evidence for genotype-phenotype correlation |
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