ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins
The fortran program ESPript was created in 1993, to display on a PostScript figure multiple sequence alignments adorned with secondary structure elements. A web server was made available in 1999 and ESPript has been linked to three major web tools: ProDom which identifies protein domains, PredictPro...
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| Veröffentlicht in: | Nucleic acids research 2003-07, Vol.31 (13), p.3320-3323 |
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| creator | Gouet, Patrice Robert, Xavier Courcelle, Emmanuel |
| description | The fortran program ESPript was created in 1993, to display on a PostScript figure multiple sequence alignments adorned with secondary structure elements. A web server was made available in 1999 and ESPript has been linked to three major web tools: ProDom which identifies protein domains, PredictProtein which predicts secondary structure elements and NPS@ which runs sequence alignment programs. A web server named ENDscript was created in 2002 to facilitate the generation of ESPript figures containing a large amount of information. ENDscript uses programs such as BLAST, Clustal and PHYLODENDRON to work on protein sequences and such as DSSP, CNS and MOLSCRIPT to work on protein coordinates. It enables the creation, from a single Protein Data Bank identifier, of a multiple sequence alignment figure adorned with secondary structure elements of each sequence of known 3D structure. Similar 3D structures are superimposed in turn with the program PROFIT and a final figure is drawn with BOBSCRIPT, which shows sequence and structure conservation along the Cα trace of the query. ESPript and ENDscript are available at http://genopole.toulouse.inra.fr/ESPript. |
| doi_str_mv | 10.1093/nar/gkg556 |
| format | Article |
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| source | Oxford Journals Open Access Collection; MEDLINE; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Biochemistry, Molecular Biology Databases, Protein DNA-Binding Proteins - chemistry Internet Life Sciences Models, Molecular Molecular Structure Protein Conformation Protein Structure, Secondary Protein Structure, Tertiary Proteins - chemistry Proteins - physiology Sequence Alignment - methods Sequence Analysis, Protein - methods Sequence Homology, Amino Acid Transcription Factors - chemistry User-Computer Interface |
| title | ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins |
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