Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study

An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D...

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Veröffentlicht in:Human molecular genetics 2006-08, Vol.15 (16), p.2468-2478
Hauptverfasser: Song, Qing, Cole, John W., O'Connell, Jeffrey R., Stine, Oscar C., Gallagher, Margaret, Giles, Wayne H., Mitchell, Braxton D., Wozniak, Marcella A., Stern, Barney J., Sorkin, John D., McArdle, Patrick F., Naj, Adam C., Xu, Qin, Gibbons, Gary H., Kittner, Steven J.
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container_end_page 2478
container_issue 16
container_start_page 2468
container_title Human molecular genetics
container_volume 15
creator Song, Qing
Cole, John W.
O'Connell, Jeffrey R.
Stine, Oscar C.
Gallagher, Margaret
Giles, Wayne H.
Mitchell, Braxton D.
Wozniak, Marcella A.
Stern, Barney J.
Sorkin, John D.
McArdle, Patrick F.
Naj, Adam C.
Xu, Qin
Gibbons, Gary H.
Kittner, Steven J.
description An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified.
doi_str_mv 10.1093/hmg/ddl169
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SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. 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Biological and molecular evolution ; Genetics, Population ; Haplotypes ; Humans ; Linkage Disequilibrium ; Medical sciences ; Middle Aged ; Molecular and cellular biology ; Neurology ; Polymorphism, Genetic ; Risk Factors ; Smoking ; Stroke - classification ; Stroke - genetics ; Untranslated Regions - genetics ; Vascular diseases and vascular malformations of the nervous system</subject><ispartof>Human molecular genetics, 2006-08, Vol.15 (16), p.2468-2478</ispartof><rights>2006 INIST-CNRS</rights><rights>Copyright Oxford University Press(England) Aug 15, 2006</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c502t-6875fad6f1a8b3a942ded1e9b946624ffb54dfc577c4ff8c316e2a20c1aee1893</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=18031183$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16835261$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Song, Qing</creatorcontrib><creatorcontrib>Cole, John W.</creatorcontrib><creatorcontrib>O'Connell, Jeffrey R.</creatorcontrib><creatorcontrib>Stine, Oscar C.</creatorcontrib><creatorcontrib>Gallagher, Margaret</creatorcontrib><creatorcontrib>Giles, Wayne H.</creatorcontrib><creatorcontrib>Mitchell, Braxton D.</creatorcontrib><creatorcontrib>Wozniak, Marcella A.</creatorcontrib><creatorcontrib>Stern, Barney J.</creatorcontrib><creatorcontrib>Sorkin, John D.</creatorcontrib><creatorcontrib>McArdle, Patrick F.</creatorcontrib><creatorcontrib>Naj, Adam C.</creatorcontrib><creatorcontrib>Xu, Qin</creatorcontrib><creatorcontrib>Gibbons, Gary H.</creatorcontrib><creatorcontrib>Kittner, Steven J.</creatorcontrib><title>Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study</title><title>Human molecular genetics</title><addtitle>Hum Mol Genet</addtitle><description>An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. 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Psychology</topic><topic>Gene Frequency</topic><topic>Genetics of eukaryotes. 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In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>16835261</pmid><doi>10.1093/hmg/ddl169</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record>
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subjects 3',5'-Cyclic-AMP Phosphodiesterases - genetics
Adolescent
Adult
African Americans - genetics
Biological and medical sciences
Case-Control Studies
Cerebral Infarction - etiology
Cerebral Infarction - genetics
Cerebral Infarction - prevention & control
Conserved Sequence
Cyclic Nucleotide Phosphodiesterases, Type 3
Cyclic Nucleotide Phosphodiesterases, Type 4
European Continental Ancestry Group - genetics
Female
Fundamental and applied biological sciences. Psychology
Gene Frequency
Genetics of eukaryotes. Biological and molecular evolution
Genetics, Population
Haplotypes
Humans
Linkage Disequilibrium
Medical sciences
Middle Aged
Molecular and cellular biology
Neurology
Polymorphism, Genetic
Risk Factors
Smoking
Stroke - classification
Stroke - genetics
Untranslated Regions - genetics
Vascular diseases and vascular malformations of the nervous system
title Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study
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