Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study
An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D...
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creator | Song, Qing Cole, John W. O'Connell, Jeffrey R. Stine, Oscar C. Gallagher, Margaret Giles, Wayne H. Mitchell, Braxton D. Wozniak, Marcella A. Stern, Barney J. Sorkin, John D. McArdle, Patrick F. Naj, Adam C. Xu, Qin Gibbons, Gary H. Kittner, Steven J. |
description | An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified. |
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In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified.</description><identifier>ISSN: 0964-6906</identifier><identifier>EISSN: 1460-2083</identifier><identifier>DOI: 10.1093/hmg/ddl169</identifier><identifier>PMID: 16835261</identifier><identifier>CODEN: HNGEE5</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>3',5'-Cyclic-AMP Phosphodiesterases - genetics ; Adolescent ; Adult ; African Americans - genetics ; Biological and medical sciences ; Case-Control Studies ; Cerebral Infarction - etiology ; Cerebral Infarction - genetics ; Cerebral Infarction - prevention & control ; Conserved Sequence ; Cyclic Nucleotide Phosphodiesterases, Type 3 ; Cyclic Nucleotide Phosphodiesterases, Type 4 ; European Continental Ancestry Group - genetics ; Female ; Fundamental and applied biological sciences. Psychology ; Gene Frequency ; Genetics of eukaryotes. Biological and molecular evolution ; Genetics, Population ; Haplotypes ; Humans ; Linkage Disequilibrium ; Medical sciences ; Middle Aged ; Molecular and cellular biology ; Neurology ; Polymorphism, Genetic ; Risk Factors ; Smoking ; Stroke - classification ; Stroke - genetics ; Untranslated Regions - genetics ; Vascular diseases and vascular malformations of the nervous system</subject><ispartof>Human molecular genetics, 2006-08, Vol.15 (16), p.2468-2478</ispartof><rights>2006 INIST-CNRS</rights><rights>Copyright Oxford University Press(England) Aug 15, 2006</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c502t-6875fad6f1a8b3a942ded1e9b946624ffb54dfc577c4ff8c316e2a20c1aee1893</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=18031183$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16835261$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Song, Qing</creatorcontrib><creatorcontrib>Cole, John W.</creatorcontrib><creatorcontrib>O'Connell, Jeffrey R.</creatorcontrib><creatorcontrib>Stine, Oscar C.</creatorcontrib><creatorcontrib>Gallagher, Margaret</creatorcontrib><creatorcontrib>Giles, Wayne H.</creatorcontrib><creatorcontrib>Mitchell, Braxton D.</creatorcontrib><creatorcontrib>Wozniak, Marcella A.</creatorcontrib><creatorcontrib>Stern, Barney J.</creatorcontrib><creatorcontrib>Sorkin, John D.</creatorcontrib><creatorcontrib>McArdle, Patrick F.</creatorcontrib><creatorcontrib>Naj, Adam C.</creatorcontrib><creatorcontrib>Xu, Qin</creatorcontrib><creatorcontrib>Gibbons, Gary H.</creatorcontrib><creatorcontrib>Kittner, Steven J.</creatorcontrib><title>Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study</title><title>Human molecular genetics</title><addtitle>Hum Mol Genet</addtitle><description>An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified.</description><subject>3',5'-Cyclic-AMP Phosphodiesterases - genetics</subject><subject>Adolescent</subject><subject>Adult</subject><subject>African Americans - genetics</subject><subject>Biological and medical sciences</subject><subject>Case-Control Studies</subject><subject>Cerebral Infarction - etiology</subject><subject>Cerebral Infarction - genetics</subject><subject>Cerebral Infarction - prevention & control</subject><subject>Conserved Sequence</subject><subject>Cyclic Nucleotide Phosphodiesterases, Type 3</subject><subject>Cyclic Nucleotide Phosphodiesterases, Type 4</subject><subject>European Continental Ancestry Group - genetics</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Frequency</subject><subject>Genetics of eukaryotes. Biological and molecular evolution</subject><subject>Genetics, Population</subject><subject>Haplotypes</subject><subject>Humans</subject><subject>Linkage Disequilibrium</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>Molecular and cellular biology</subject><subject>Neurology</subject><subject>Polymorphism, Genetic</subject><subject>Risk Factors</subject><subject>Smoking</subject><subject>Stroke - classification</subject><subject>Stroke - genetics</subject><subject>Untranslated Regions - genetics</subject><subject>Vascular diseases and vascular malformations of the nervous system</subject><issn>0964-6906</issn><issn>1460-2083</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2006</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFksFu1DAURSNERYfChg9AFhIskEL9bMdxWCDBQFukSoxUEIWN5TjOxJ3EDvakYr6Bn8bDDC2wYWVb9_j6veebZY8AvwBc0eNuWB43TQ-8upPNgHGcEyzo3WyGK85yXmF-mN2P8Qpj4IyW97JD4IIWhMMs-7HofBw731gT1yaoaBB7i0bfbwYfxs7GISLlGrTuDAo2rpBvkTbB1EH1yLpWBb223qUtUqi2QWmbhNGPU6-2wstfNy_Wwa8MWgRzbdxv_ouf3BJ99oNxCZiazYPsoFV9NA_361H26eTdx_lZfv7h9P389XmuC0zWORdl0aqGt6BETVXFSGMaMFVdMc4Ja9u6YE2ri7LU6SA0BW6IIliDMgZERY-yVzvfcaoH0-hUUupGjsEOKmykV1b-rTjbyaW_lsApE5gkg2d7g-C_TWlwcrBRm75XzvgpSi54RTAr_gtCRUvMKCTwyT_glZ-CS1OQBICSkhY0Qc93kA4-xmDam5IBy20SZEqC3CUhwY__bPIW3X99Ap7uARW16tugnLbxlhOYAojtq_mOsykg3290FVaSl7Qs5NnlV_lmfrLgpLyUF_Qn8qLPZA</recordid><startdate>20060815</startdate><enddate>20060815</enddate><creator>Song, Qing</creator><creator>Cole, John W.</creator><creator>O'Connell, Jeffrey R.</creator><creator>Stine, Oscar C.</creator><creator>Gallagher, Margaret</creator><creator>Giles, Wayne H.</creator><creator>Mitchell, Braxton D.</creator><creator>Wozniak, Marcella A.</creator><creator>Stern, Barney J.</creator><creator>Sorkin, John D.</creator><creator>McArdle, Patrick F.</creator><creator>Naj, Adam C.</creator><creator>Xu, Qin</creator><creator>Gibbons, Gary H.</creator><creator>Kittner, Steven J.</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20060815</creationdate><title>Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study</title><author>Song, Qing ; Cole, John W. ; O'Connell, Jeffrey R. ; Stine, Oscar C. ; Gallagher, Margaret ; Giles, Wayne H. ; Mitchell, Braxton D. ; Wozniak, Marcella A. ; Stern, Barney J. ; Sorkin, John D. ; McArdle, Patrick F. ; Naj, Adam C. ; Xu, Qin ; Gibbons, Gary H. ; Kittner, Steven J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c502t-6875fad6f1a8b3a942ded1e9b946624ffb54dfc577c4ff8c316e2a20c1aee1893</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2006</creationdate><topic>3',5'-Cyclic-AMP Phosphodiesterases - genetics</topic><topic>Adolescent</topic><topic>Adult</topic><topic>African Americans - genetics</topic><topic>Biological and medical sciences</topic><topic>Case-Control Studies</topic><topic>Cerebral Infarction - etiology</topic><topic>Cerebral Infarction - genetics</topic><topic>Cerebral Infarction - prevention & control</topic><topic>Conserved Sequence</topic><topic>Cyclic Nucleotide Phosphodiesterases, Type 3</topic><topic>Cyclic Nucleotide Phosphodiesterases, Type 4</topic><topic>European Continental Ancestry Group - genetics</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Frequency</topic><topic>Genetics of eukaryotes. Biological and molecular evolution</topic><topic>Genetics, Population</topic><topic>Haplotypes</topic><topic>Humans</topic><topic>Linkage Disequilibrium</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>Molecular and cellular biology</topic><topic>Neurology</topic><topic>Polymorphism, Genetic</topic><topic>Risk Factors</topic><topic>Smoking</topic><topic>Stroke - classification</topic><topic>Stroke - genetics</topic><topic>Untranslated Regions - genetics</topic><topic>Vascular diseases and vascular malformations of the nervous system</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Song, Qing</creatorcontrib><creatorcontrib>Cole, John W.</creatorcontrib><creatorcontrib>O'Connell, Jeffrey R.</creatorcontrib><creatorcontrib>Stine, Oscar C.</creatorcontrib><creatorcontrib>Gallagher, Margaret</creatorcontrib><creatorcontrib>Giles, Wayne H.</creatorcontrib><creatorcontrib>Mitchell, Braxton D.</creatorcontrib><creatorcontrib>Wozniak, Marcella A.</creatorcontrib><creatorcontrib>Stern, Barney J.</creatorcontrib><creatorcontrib>Sorkin, John D.</creatorcontrib><creatorcontrib>McArdle, Patrick F.</creatorcontrib><creatorcontrib>Naj, Adam C.</creatorcontrib><creatorcontrib>Xu, Qin</creatorcontrib><creatorcontrib>Gibbons, Gary H.</creatorcontrib><creatorcontrib>Kittner, Steven J.</creatorcontrib><collection>Istex</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Human molecular genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Song, Qing</au><au>Cole, John W.</au><au>O'Connell, Jeffrey R.</au><au>Stine, Oscar C.</au><au>Gallagher, Margaret</au><au>Giles, Wayne H.</au><au>Mitchell, Braxton D.</au><au>Wozniak, Marcella A.</au><au>Stern, Barney J.</au><au>Sorkin, John D.</au><au>McArdle, Patrick F.</au><au>Naj, Adam C.</au><au>Xu, Qin</au><au>Gibbons, Gary H.</au><au>Kittner, Steven J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study</atitle><jtitle>Human molecular genetics</jtitle><addtitle>Hum Mol Genet</addtitle><date>2006-08-15</date><risdate>2006</risdate><volume>15</volume><issue>16</issue><spage>2468</spage><epage>2478</epage><pages>2468-2478</pages><issn>0964-6906</issn><eissn>1460-2083</eissn><coden>HNGEE5</coden><abstract>An association between polymorphisms within the phosphodiesterase 4D gene (PDE4D) and ischemic stroke was initially reported in older adults from Iceland and has been supported by studies in several other primarily elderly populations. In the present study, we examined the association between PDE4D polymorphisms and early-onset ischemic stroke in a biracial female population. A systematic search for polymorphisms in the highly evolutionary conserved regions of PDE4D was performed on 48 African-American and 48 Caucasian participants. Novel and known polymorphisms were then prioritized and genotyped in the entire study population of 224 cases of first ischemic stroke among women aged 15–49 and 211 age- and ethnicity-balanced control subjects. Forty novel and previously reported polymorphisms with a minor allele frequency greater than 0.05 were determined, with 23 polymorphisms selected for analysis in the full case–control sample. Single nucleotide polymorphism (SNP), linkage disequilibrium and haplotype analyses were performed. SNP rs918592, found in an intron near the 5′ end of the gene, was significantly associated with stroke (age- and race-adjusted odds ratio (OR=1.5, P=0.007), with four other SNPs showing significant, albeit less strong, associations. The magnitude of association was similar across African-Americans and Caucasians and across multiple stroke subtypes (e.g. atherosclerotic, lacunar and non-lacunar of undetermined etiology). The association of rs918592 with stroke was confined exclusively to current smokers (OR=3.2, P=0.00014), with no association observed among never-smokers (OR=0.9, P=0.75) or former smokers (OR=1.2, P=0.66), demonstrating a gene–environment interaction (P=0.03). A strong dose–response relationship was also seen among current smokers. No specific risk haplotypes were identified.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>16835261</pmid><doi>10.1093/hmg/ddl169</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 3',5'-Cyclic-AMP Phosphodiesterases - genetics Adolescent Adult African Americans - genetics Biological and medical sciences Case-Control Studies Cerebral Infarction - etiology Cerebral Infarction - genetics Cerebral Infarction - prevention & control Conserved Sequence Cyclic Nucleotide Phosphodiesterases, Type 3 Cyclic Nucleotide Phosphodiesterases, Type 4 European Continental Ancestry Group - genetics Female Fundamental and applied biological sciences. Psychology Gene Frequency Genetics of eukaryotes. Biological and molecular evolution Genetics, Population Haplotypes Humans Linkage Disequilibrium Medical sciences Middle Aged Molecular and cellular biology Neurology Polymorphism, Genetic Risk Factors Smoking Stroke - classification Stroke - genetics Untranslated Regions - genetics Vascular diseases and vascular malformations of the nervous system |
title | Phosphodiesterase 4D polymorphisms and the risk of cerebral infarction in a biracial population: the Stroke Prevention in Young Women Study |
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