Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1
Primary expression of the Rhizobium meliloti-induced peroxidase gene rip1 occurs prior to nodule morphogenesis, specifically at the site of impending rhizobial infection (D. Cook, D. Dreyer, D. Bonnet, M. Howell, E. Nony, K. VandenBosch [1995] Plant Cell 7: 43-55). We examined the distribution and s...
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| Veröffentlicht in: | Plant physiology (Bethesda) 1996-12, Vol.112 (4), p.1437-1446 |
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| creator | Hui-Mei Peng Dale A. Dreyer VandenBosch, Kathryn A. Cook, Douglas |
| description | Primary expression of the Rhizobium meliloti-induced peroxidase gene rip1 occurs prior to nodule morphogenesis, specifically at the site of impending rhizobial infection (D. Cook, D. Dreyer, D. Bonnet, M. Howell, E. Nony, K. VandenBosch [1995] Plant Cell 7: 43-55). We examined the distribution and structure of rip1 transcript throughout nodule development. We determined that expression of rip1 in root tips is correlated with the competence of this zone for symbiotic association, whereas after rhizobial infection rip1 transcript is specifically associated with the zone of nodule development, including nascent nodule primordia. rip1 transcripts are characterized by multiple polyadenylation sites distributed within 200 to 400 bp of the translation stop site, and a single major transcription initiation site in close proximity to the rip1 open reading frame. Thus, rip1 expression is likely to be mediated through effects on a single transcription unit. Immediately 5' of the rip1 transcription unit DNA sequence analysis identified a 377-bp DNA element containing extensive repeat structure that is widely distributed in the Medicago truncatula genome. |
| doi_str_mv | 10.1104/pp.112.4.1437 |
| format | Article |
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Dreyer ; VandenBosch, Kathryn A. ; Cook, Douglas</creator><creatorcontrib>Hui-Mei Peng ; Dale A. Dreyer ; VandenBosch, Kathryn A. ; Cook, Douglas ; Escola Superior de Agricultura Luiz de Queiroz, Piracicaba, SP (Brazil) ; Texas AandM Univ., College Station, TX</creatorcontrib><description>Primary expression of the Rhizobium meliloti-induced peroxidase gene rip1 occurs prior to nodule morphogenesis, specifically at the site of impending rhizobial infection (D. Cook, D. Dreyer, D. Bonnet, M. Howell, E. Nony, K. VandenBosch [1995] Plant Cell 7: 43-55). We examined the distribution and structure of rip1 transcript throughout nodule development. We determined that expression of rip1 in root tips is correlated with the competence of this zone for symbiotic association, whereas after rhizobial infection rip1 transcript is specifically associated with the zone of nodule development, including nascent nodule primordia. rip1 transcripts are characterized by multiple polyadenylation sites distributed within 200 to 400 bp of the translation stop site, and a single major transcription initiation site in close proximity to the rip1 open reading frame. Thus, rip1 expression is likely to be mediated through effects on a single transcription unit. Immediately 5' of the rip1 transcription unit DNA sequence analysis identified a 377-bp DNA element containing extensive repeat structure that is widely distributed in the Medicago truncatula genome.</description><identifier>ISSN: 0032-0889</identifier><identifier>EISSN: 1532-2548</identifier><identifier>DOI: 10.1104/pp.112.4.1437</identifier><identifier>PMID: 8972593</identifier><identifier>CODEN: PPHYA5</identifier><language>eng</language><publisher>Rockville, MD: American Society of Plant Physiologists</publisher><subject>adn ; Agronomy. Soil science and plant productions ; Base Sequence ; Biological and medical sciences ; DNA ; dna hybridization ; DNA Transposable Elements ; DNA, Complementary ; Economic plant physiology ; expresion genica ; expression des genes ; formation de nodosites ; Fundamental and applied biological sciences. Psychology ; gene ; gene expression ; Gene Expression Regulation, Bacterial ; Gene Expression Regulation, Enzymologic ; Genes ; hibridacion de adn ; host parasite relations ; hybridation d' adn ; Infections ; medicago truncatula ; Molecular Sequence Data ; morfogenesis ; morphogenese ; Morphogenesis ; nodosite racinaire ; nodulacion ; Nodulation ; Nodules ; nucleotide sequence ; nudosidades radiculares ; oxidacion ; oxidation ; oxydation ; Parasitism and symbiosis ; pcr ; Peroxidases - genetics ; Plant cells ; Plant physiology and development ; Plant-Microbe and Plant-Insect Interactions ; Plants ; racine ; raices ; relaciones huesped parasito ; relation hote parasite ; rhizobium meliloti ; RNA ; root nodulation ; root nodules ; Root tips ; roots ; secuencia nucleotidica ; sequence nucleotidique ; Sinorhizobium meliloti - genetics ; Symbiosis ; Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) ; transcripcion ; transcription ; Transcription, Genetic</subject><ispartof>Plant physiology (Bethesda), 1996-12, Vol.112 (4), p.1437-1446</ispartof><rights>Copyright 1996 American Society of Plant Physiologists</rights><rights>1997 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c588t-fda615354e57f53fbb40056fef238e31453f66ec75c9c3e7999644f26a1c034b3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/4277462$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/4277462$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,780,784,803,885,27924,27925,58017,58250</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=2529776$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/8972593$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hui-Mei Peng</creatorcontrib><creatorcontrib>Dale A. Dreyer</creatorcontrib><creatorcontrib>VandenBosch, Kathryn A.</creatorcontrib><creatorcontrib>Cook, Douglas</creatorcontrib><creatorcontrib>Escola Superior de Agricultura Luiz de Queiroz, Piracicaba, SP (Brazil)</creatorcontrib><creatorcontrib>Texas AandM Univ., College Station, TX</creatorcontrib><title>Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1</title><title>Plant physiology (Bethesda)</title><addtitle>Plant Physiol</addtitle><description>Primary expression of the Rhizobium meliloti-induced peroxidase gene rip1 occurs prior to nodule morphogenesis, specifically at the site of impending rhizobial infection (D. Cook, D. Dreyer, D. Bonnet, M. Howell, E. Nony, K. VandenBosch [1995] Plant Cell 7: 43-55). We examined the distribution and structure of rip1 transcript throughout nodule development. We determined that expression of rip1 in root tips is correlated with the competence of this zone for symbiotic association, whereas after rhizobial infection rip1 transcript is specifically associated with the zone of nodule development, including nascent nodule primordia. rip1 transcripts are characterized by multiple polyadenylation sites distributed within 200 to 400 bp of the translation stop site, and a single major transcription initiation site in close proximity to the rip1 open reading frame. Thus, rip1 expression is likely to be mediated through effects on a single transcription unit. Immediately 5' of the rip1 transcription unit DNA sequence analysis identified a 377-bp DNA element containing extensive repeat structure that is widely distributed in the Medicago truncatula genome.</description><subject>adn</subject><subject>Agronomy. Soil science and plant productions</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>DNA</subject><subject>dna hybridization</subject><subject>DNA Transposable Elements</subject><subject>DNA, Complementary</subject><subject>Economic plant physiology</subject><subject>expresion genica</subject><subject>expression des genes</subject><subject>formation de nodosites</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>gene</subject><subject>gene expression</subject><subject>Gene Expression Regulation, Bacterial</subject><subject>Gene Expression Regulation, Enzymologic</subject><subject>Genes</subject><subject>hibridacion de adn</subject><subject>host parasite relations</subject><subject>hybridation d' adn</subject><subject>Infections</subject><subject>medicago truncatula</subject><subject>Molecular Sequence Data</subject><subject>morfogenesis</subject><subject>morphogenese</subject><subject>Morphogenesis</subject><subject>nodosite racinaire</subject><subject>nodulacion</subject><subject>Nodulation</subject><subject>Nodules</subject><subject>nucleotide sequence</subject><subject>nudosidades radiculares</subject><subject>oxidacion</subject><subject>oxidation</subject><subject>oxydation</subject><subject>Parasitism and symbiosis</subject><subject>pcr</subject><subject>Peroxidases - genetics</subject><subject>Plant cells</subject><subject>Plant physiology and development</subject><subject>Plant-Microbe and Plant-Insect Interactions</subject><subject>Plants</subject><subject>racine</subject><subject>raices</subject><subject>relaciones huesped parasito</subject><subject>relation hote parasite</subject><subject>rhizobium meliloti</subject><subject>RNA</subject><subject>root nodulation</subject><subject>root nodules</subject><subject>Root tips</subject><subject>roots</subject><subject>secuencia nucleotidica</subject><subject>sequence nucleotidique</subject><subject>Sinorhizobium meliloti - genetics</subject><subject>Symbiosis</subject><subject>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</subject><subject>transcripcion</subject><subject>transcription</subject><subject>Transcription, Genetic</subject><issn>0032-0889</issn><issn>1532-2548</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUuLFDEUhYMoYzu6dKdSC3FXbd6PhQsZxlEYENQBdyGVuunOUF0pkyoZ_fWm6aaZWbk6Iee7l3M5CL0keE0I5u-nqSpd8zXhTD1CKyIYbang-jFaYVzfWGvzFD0r5RZjTBjhZ-hMG0WFYSv08wpGaMqcFz8vGRo39k0fQ4AM4xzd0GTYLIObYxqbFJp5C823bfyburjs2jj2i4e-mSCnu9i7As1mvy7HiTxHT4IbCrw46jm6-XT54-Jze_316svFx-vWC63nNvRO1sSCg1BBsNB1HGMhAwTKNNSw9U9K8Ep44xkoY4zkPFDpiMeMd-wcfTjsnZZuB72vsbMb7JTjzuU_NrloHzpj3NpN-m2J0FiJOv_uOJ_TrwXKbHexeBgGN0JailVaMkyp-S9IJJNUGl3B9gD6nErJEE5hCLb7yuw0VaWW231llX99_4ITfeyo-m-PviveDSG70cdywqigRilZsVcH7LbMKZ9sTpXiklb7zcEOLlm3yXXDzXdijMLYUK0F-wdPWLJx</recordid><startdate>19961201</startdate><enddate>19961201</enddate><creator>Hui-Mei Peng</creator><creator>Dale A. Dreyer</creator><creator>VandenBosch, Kathryn A.</creator><creator>Cook, Douglas</creator><general>American Society of Plant Physiologists</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19961201</creationdate><title>Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1</title><author>Hui-Mei Peng ; Dale A. Dreyer ; VandenBosch, Kathryn A. ; Cook, Douglas</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c588t-fda615354e57f53fbb40056fef238e31453f66ec75c9c3e7999644f26a1c034b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><topic>adn</topic><topic>Agronomy. Soil science and plant productions</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>DNA</topic><topic>dna hybridization</topic><topic>DNA Transposable Elements</topic><topic>DNA, Complementary</topic><topic>Economic plant physiology</topic><topic>expresion genica</topic><topic>expression des genes</topic><topic>formation de nodosites</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>gene</topic><topic>gene expression</topic><topic>Gene Expression Regulation, Bacterial</topic><topic>Gene Expression Regulation, Enzymologic</topic><topic>Genes</topic><topic>hibridacion de adn</topic><topic>host parasite relations</topic><topic>hybridation d' adn</topic><topic>Infections</topic><topic>medicago truncatula</topic><topic>Molecular Sequence Data</topic><topic>morfogenesis</topic><topic>morphogenese</topic><topic>Morphogenesis</topic><topic>nodosite racinaire</topic><topic>nodulacion</topic><topic>Nodulation</topic><topic>Nodules</topic><topic>nucleotide sequence</topic><topic>nudosidades radiculares</topic><topic>oxidacion</topic><topic>oxidation</topic><topic>oxydation</topic><topic>Parasitism and symbiosis</topic><topic>pcr</topic><topic>Peroxidases - genetics</topic><topic>Plant cells</topic><topic>Plant physiology and development</topic><topic>Plant-Microbe and Plant-Insect Interactions</topic><topic>Plants</topic><topic>racine</topic><topic>raices</topic><topic>relaciones huesped parasito</topic><topic>relation hote parasite</topic><topic>rhizobium meliloti</topic><topic>RNA</topic><topic>root nodulation</topic><topic>root nodules</topic><topic>Root tips</topic><topic>roots</topic><topic>secuencia nucleotidica</topic><topic>sequence nucleotidique</topic><topic>Sinorhizobium meliloti - genetics</topic><topic>Symbiosis</topic><topic>Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...)</topic><topic>transcripcion</topic><topic>transcription</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hui-Mei Peng</creatorcontrib><creatorcontrib>Dale A. Dreyer</creatorcontrib><creatorcontrib>VandenBosch, Kathryn A.</creatorcontrib><creatorcontrib>Cook, Douglas</creatorcontrib><creatorcontrib>Escola Superior de Agricultura Luiz de Queiroz, Piracicaba, SP (Brazil)</creatorcontrib><creatorcontrib>Texas AandM Univ., College Station, TX</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Plant physiology (Bethesda)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hui-Mei Peng</au><au>Dale A. Dreyer</au><au>VandenBosch, Kathryn A.</au><au>Cook, Douglas</au><aucorp>Escola Superior de Agricultura Luiz de Queiroz, Piracicaba, SP (Brazil)</aucorp><aucorp>Texas AandM Univ., College Station, TX</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1</atitle><jtitle>Plant physiology (Bethesda)</jtitle><addtitle>Plant Physiol</addtitle><date>1996-12-01</date><risdate>1996</risdate><volume>112</volume><issue>4</issue><spage>1437</spage><epage>1446</epage><pages>1437-1446</pages><issn>0032-0889</issn><eissn>1532-2548</eissn><coden>PPHYA5</coden><abstract>Primary expression of the Rhizobium meliloti-induced peroxidase gene rip1 occurs prior to nodule morphogenesis, specifically at the site of impending rhizobial infection (D. Cook, D. Dreyer, D. Bonnet, M. Howell, E. Nony, K. VandenBosch [1995] Plant Cell 7: 43-55). We examined the distribution and structure of rip1 transcript throughout nodule development. We determined that expression of rip1 in root tips is correlated with the competence of this zone for symbiotic association, whereas after rhizobial infection rip1 transcript is specifically associated with the zone of nodule development, including nascent nodule primordia. rip1 transcripts are characterized by multiple polyadenylation sites distributed within 200 to 400 bp of the translation stop site, and a single major transcription initiation site in close proximity to the rip1 open reading frame. Thus, rip1 expression is likely to be mediated through effects on a single transcription unit. Immediately 5' of the rip1 transcription unit DNA sequence analysis identified a 377-bp DNA element containing extensive repeat structure that is widely distributed in the Medicago truncatula genome.</abstract><cop>Rockville, MD</cop><pub>American Society of Plant Physiologists</pub><pmid>8972593</pmid><doi>10.1104/pp.112.4.1437</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 0032-0889 |
| ispartof | Plant physiology (Bethesda), 1996-12, Vol.112 (4), p.1437-1446 |
| issn | 0032-0889 1532-2548 |
| language | eng |
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| subjects | adn Agronomy. Soil science and plant productions Base Sequence Biological and medical sciences DNA dna hybridization DNA Transposable Elements DNA, Complementary Economic plant physiology expresion genica expression des genes formation de nodosites Fundamental and applied biological sciences. Psychology gene gene expression Gene Expression Regulation, Bacterial Gene Expression Regulation, Enzymologic Genes hibridacion de adn host parasite relations hybridation d' adn Infections medicago truncatula Molecular Sequence Data morfogenesis morphogenese Morphogenesis nodosite racinaire nodulacion Nodulation Nodules nucleotide sequence nudosidades radiculares oxidacion oxidation oxydation Parasitism and symbiosis pcr Peroxidases - genetics Plant cells Plant physiology and development Plant-Microbe and Plant-Insect Interactions Plants racine raices relaciones huesped parasito relation hote parasite rhizobium meliloti RNA root nodulation root nodules Root tips roots secuencia nucleotidica sequence nucleotidique Sinorhizobium meliloti - genetics Symbiosis Symbiosis (nodules, symbiotic nitrogen fixation, mycorrhiza...) transcripcion transcription Transcription, Genetic |
| title | Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1 |
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