TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions
TransTerm is a database of mRNA sequences and parameters useful for detecting translational control signals in general. TransTerm-98 has been expanded beyond previous years to include full coding sequences and UTRs, while retaining the original small contexts about the coding sequence start- and sto...
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| Veröffentlicht in: | Nucleic acids research 1999, Vol.27 (1), p.293-294 |
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| container_title | Nucleic acids research |
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| creator | Dalphin, Mark E. Stockwell, Peter A. Tate, Warren P. Brown, Chris M. |
| description | TransTerm is a database of mRNA sequences and parameters useful for detecting translational control signals in general. TransTerm-98 has been expanded beyond previous years to include full coding sequences and UTRs, while retaining the original small contexts about the coding sequence start- and stopcodons. The database contains more than 130 000 non-redundant coding sequences with associated untranslated regions (UTRs) from over 450 species. This includes the complete genomes of 12 prokaryotic and one eukaryotic organism. Several coding sequence parameters are available: coding sequence length, Nc, GC3 and, when it is computable, Codon Adaptation Index (CAI). Codon usage tables and summaries of start- and stop-codon contexts are also included. TransTerm-98 has both a relational database form with a WWW interface and a flatfile format, also available by Internet browser. TransTerm is available at: http://biochem.otago.ac.nz:800/Transterm/homepage.html |
| doi_str_mv | 10.1093/nar/27.1.293 |
| format | Article |
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| ispartof | Nucleic acids research, 1999, Vol.27 (1), p.293-294 |
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| source | Oxford Journals Open Access Collection; MEDLINE; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Codon - genetics Databases, Factual Eukaryotic Cells Genome, Bacterial Genome, Viral Information Storage and Retrieval Internet Open Reading Frames - genetics Organelles - genetics Prokaryotic Cells Protein Biosynthesis - genetics Regulatory Sequences, Nucleic Acid RNA, Messenger - genetics Untranslated Regions - genetics User-Computer Interface |
| title | TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions |
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