Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas

When 3 x 10(8) bacteria of the Escherichia coli tyrA14(oc) leu308(am) strain WU3610 are plated on glucose salts agar supplemented with leucine only, colonies of slow-growing Tyr+ suppressor mutants begin to appear after about a week and increase in numbers roughly linearly with time thereafter (stat...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Genetics (Austin) 1998-04, Vol.148 (4), p.1627-1635
Hauptverfasser: Timms, Andrew R, Bridges, Bryn A
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1635
container_issue 4
container_start_page 1627
container_title Genetics (Austin)
container_volume 148
creator Timms, Andrew R
Bridges, Bryn A
description When 3 x 10(8) bacteria of the Escherichia coli tyrA14(oc) leu308(am) strain WU3610 are plated on glucose salts agar supplemented with leucine only, colonies of slow-growing Tyr+ suppressor mutants begin to appear after about a week and increase in numbers roughly linearly with time thereafter (stationary phase or starvation-associated mutation). From a library constructed from two of these mutants, a clone was obtained that suppressed the tyrosine requirement of WU3610 when present on a multicopy plasmid. The activity was identified to an open reading frame we call tas, the sequence for which has homology with a variety of known genes with aldo-keto reductase activity. The activity of tas complements the prephenate dehydrogenase dysfunction of tyrA14 (the chorismate mutase activity of tyrA possibly being still functional). A strain deleted for tas showed no spontaneous mutation under starvation conditions. Whereas neither tas+ nor tas bacteria showed any increase in viable or total count when plated under conditions of tyrosine starvation at 3 x 10(8) cells per plate, at lower density (approximately 10(7) per plate) tas+ but not tas bacteria showed considerable residual growth. We suggest that the single copy of tas present in WU3610 allows cryptic cell or DNA turnover under conditions of tyrosine starvation and that this is an essential prerequisite for starvation-associated mutation in this system. The target gene for mutation is not tas, although an increase in the expression of this gene, for example, resulting from a suppressor mutation affecting supercoiling, could be responsible for the slow-growing Tyr+ phenotype.
doi_str_mv 10.1093/genetics/148.4.1627
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1460079</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>16401567</sourcerecordid><originalsourceid>FETCH-LOGICAL-c490t-3abfaf92bf2ff017c7a87b7c44cc3c572c7749cba786481dfabeac948850361b3</originalsourceid><addsrcrecordid>eNpdUcFu1DAUtBCoLAtfgJAsDnDK1o6d2L4goaUUpIpK0Iqj5TgvG1dZe2snG_Xv8WqXqnDyk2feaOYNQm8pWVGi2PkGPIzOpnPK5YqvaF2KZ2hBFWdFWTP6HC0IoXVRC0Zfolcp3RFCalXJM3SmqpowWS7Q-BP2EJMLHocOjz3gm4cYkvOAr20fAf8ao3EeXyTbQ3S2dwbbMDj8-5bVlODJtxAzycS9GQ8q6-Bbd5gS_gI78G3C-dfgHzDjy2wYjya9Ri86MyR4c3qX6Pbrxc36W3F1ffl9_fmqsFyRsWCm6UynyqYru45QYYWRohGWc2uZrURpheDKNkbImkvadqYBYxWXsiLZXMOW6NNRdzc1W2gt-Bxm0LvotiY-6GCc_hfxrtebsNeU14QIlQU-nARiuJ8gjXrrkoVhMB7ClDStOaFVPvASvf-PeBem6HM4XVJOGZeKZBI7kmy-cIrQPTqhRB8a1X8bzQak5vrQaN569zTE486pwox_POK92_Szi6DT1gxDZlM9z_MTpT_m8q3R</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>214134890</pqid></control><display><type>article</type><title>Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas</title><source>Oxford University Press Journals All Titles (1996-Current)</source><source>MEDLINE</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Timms, Andrew R ; Bridges, Bryn A</creator><creatorcontrib>Timms, Andrew R ; Bridges, Bryn A</creatorcontrib><description>When 3 x 10(8) bacteria of the Escherichia coli tyrA14(oc) leu308(am) strain WU3610 are plated on glucose salts agar supplemented with leucine only, colonies of slow-growing Tyr+ suppressor mutants begin to appear after about a week and increase in numbers roughly linearly with time thereafter (stationary phase or starvation-associated mutation). From a library constructed from two of these mutants, a clone was obtained that suppressed the tyrosine requirement of WU3610 when present on a multicopy plasmid. The activity was identified to an open reading frame we call tas, the sequence for which has homology with a variety of known genes with aldo-keto reductase activity. The activity of tas complements the prephenate dehydrogenase dysfunction of tyrA14 (the chorismate mutase activity of tyrA possibly being still functional). A strain deleted for tas showed no spontaneous mutation under starvation conditions. Whereas neither tas+ nor tas bacteria showed any increase in viable or total count when plated under conditions of tyrosine starvation at 3 x 10(8) cells per plate, at lower density (approximately 10(7) per plate) tas+ but not tas bacteria showed considerable residual growth. We suggest that the single copy of tas present in WU3610 allows cryptic cell or DNA turnover under conditions of tyrosine starvation and that this is an essential prerequisite for starvation-associated mutation in this system. The target gene for mutation is not tas, although an increase in the expression of this gene, for example, resulting from a suppressor mutation affecting supercoiling, could be responsible for the slow-growing Tyr+ phenotype.</description><identifier>ISSN: 0016-6731</identifier><identifier>ISSN: 1943-2631</identifier><identifier>EISSN: 1943-2631</identifier><identifier>DOI: 10.1093/genetics/148.4.1627</identifier><identifier>PMID: 9560382</identifier><identifier>CODEN: GENTAE</identifier><language>eng</language><publisher>United States: Genetics Soc America</publisher><subject>Alcohol Oxidoreductases - genetics ; Aldehyde Reductase ; Aldo-Keto Reductases ; Animals ; Bacteria ; Base Sequence ; Cloning, Molecular ; Culture Media ; DNA, Bacterial ; Escherichia coli - genetics ; Escherichia coli - growth &amp; development ; Escherichia coli - metabolism ; Gene Deletion ; Genes ; Genes, Bacterial ; Genetic Complementation Test ; Genetics ; Humans ; Molecular Sequence Data ; Mutation ; Prephenate Dehydrogenase - genetics ; Starvation ; Tyrosine - metabolism</subject><ispartof>Genetics (Austin), 1998-04, Vol.148 (4), p.1627-1635</ispartof><rights>Copyright Genetics Society of America Apr 1998</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c490t-3abfaf92bf2ff017c7a87b7c44cc3c572c7749cba786481dfabeac948850361b3</citedby><cites>FETCH-LOGICAL-c490t-3abfaf92bf2ff017c7a87b7c44cc3c572c7749cba786481dfabeac948850361b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9560382$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Timms, Andrew R</creatorcontrib><creatorcontrib>Bridges, Bryn A</creatorcontrib><title>Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas</title><title>Genetics (Austin)</title><addtitle>Genetics</addtitle><description>When 3 x 10(8) bacteria of the Escherichia coli tyrA14(oc) leu308(am) strain WU3610 are plated on glucose salts agar supplemented with leucine only, colonies of slow-growing Tyr+ suppressor mutants begin to appear after about a week and increase in numbers roughly linearly with time thereafter (stationary phase or starvation-associated mutation). From a library constructed from two of these mutants, a clone was obtained that suppressed the tyrosine requirement of WU3610 when present on a multicopy plasmid. The activity was identified to an open reading frame we call tas, the sequence for which has homology with a variety of known genes with aldo-keto reductase activity. The activity of tas complements the prephenate dehydrogenase dysfunction of tyrA14 (the chorismate mutase activity of tyrA possibly being still functional). A strain deleted for tas showed no spontaneous mutation under starvation conditions. Whereas neither tas+ nor tas bacteria showed any increase in viable or total count when plated under conditions of tyrosine starvation at 3 x 10(8) cells per plate, at lower density (approximately 10(7) per plate) tas+ but not tas bacteria showed considerable residual growth. We suggest that the single copy of tas present in WU3610 allows cryptic cell or DNA turnover under conditions of tyrosine starvation and that this is an essential prerequisite for starvation-associated mutation in this system. The target gene for mutation is not tas, although an increase in the expression of this gene, for example, resulting from a suppressor mutation affecting supercoiling, could be responsible for the slow-growing Tyr+ phenotype.</description><subject>Alcohol Oxidoreductases - genetics</subject><subject>Aldehyde Reductase</subject><subject>Aldo-Keto Reductases</subject><subject>Animals</subject><subject>Bacteria</subject><subject>Base Sequence</subject><subject>Cloning, Molecular</subject><subject>Culture Media</subject><subject>DNA, Bacterial</subject><subject>Escherichia coli - genetics</subject><subject>Escherichia coli - growth &amp; development</subject><subject>Escherichia coli - metabolism</subject><subject>Gene Deletion</subject><subject>Genes</subject><subject>Genes, Bacterial</subject><subject>Genetic Complementation Test</subject><subject>Genetics</subject><subject>Humans</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Prephenate Dehydrogenase - genetics</subject><subject>Starvation</subject><subject>Tyrosine - metabolism</subject><issn>0016-6731</issn><issn>1943-2631</issn><issn>1943-2631</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdUcFu1DAUtBCoLAtfgJAsDnDK1o6d2L4goaUUpIpK0Iqj5TgvG1dZe2snG_Xv8WqXqnDyk2feaOYNQm8pWVGi2PkGPIzOpnPK5YqvaF2KZ2hBFWdFWTP6HC0IoXVRC0Zfolcp3RFCalXJM3SmqpowWS7Q-BP2EJMLHocOjz3gm4cYkvOAr20fAf8ao3EeXyTbQ3S2dwbbMDj8-5bVlODJtxAzycS9GQ8q6-Bbd5gS_gI78G3C-dfgHzDjy2wYjya9Ri86MyR4c3qX6Pbrxc36W3F1ffl9_fmqsFyRsWCm6UynyqYru45QYYWRohGWc2uZrURpheDKNkbImkvadqYBYxWXsiLZXMOW6NNRdzc1W2gt-Bxm0LvotiY-6GCc_hfxrtebsNeU14QIlQU-nARiuJ8gjXrrkoVhMB7ClDStOaFVPvASvf-PeBem6HM4XVJOGZeKZBI7kmy-cIrQPTqhRB8a1X8bzQak5vrQaN569zTE486pwox_POK92_Szi6DT1gxDZlM9z_MTpT_m8q3R</recordid><startdate>19980401</startdate><enddate>19980401</enddate><creator>Timms, Andrew R</creator><creator>Bridges, Bryn A</creator><general>Genetics Soc America</general><general>Genetics Society of America</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>4T-</scope><scope>4U-</scope><scope>7QP</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7QL</scope><scope>C1K</scope><scope>5PM</scope></search><sort><creationdate>19980401</creationdate><title>Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas</title><author>Timms, Andrew R ; Bridges, Bryn A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c490t-3abfaf92bf2ff017c7a87b7c44cc3c572c7749cba786481dfabeac948850361b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Alcohol Oxidoreductases - genetics</topic><topic>Aldehyde Reductase</topic><topic>Aldo-Keto Reductases</topic><topic>Animals</topic><topic>Bacteria</topic><topic>Base Sequence</topic><topic>Cloning, Molecular</topic><topic>Culture Media</topic><topic>DNA, Bacterial</topic><topic>Escherichia coli - genetics</topic><topic>Escherichia coli - growth &amp; development</topic><topic>Escherichia coli - metabolism</topic><topic>Gene Deletion</topic><topic>Genes</topic><topic>Genes, Bacterial</topic><topic>Genetic Complementation Test</topic><topic>Genetics</topic><topic>Humans</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Prephenate Dehydrogenase - genetics</topic><topic>Starvation</topic><topic>Tyrosine - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Timms, Andrew R</creatorcontrib><creatorcontrib>Bridges, Bryn A</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Docstoc</collection><collection>University Readers</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Environmental Sciences and Pollution Management</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genetics (Austin)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Timms, Andrew R</au><au>Bridges, Bryn A</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas</atitle><jtitle>Genetics (Austin)</jtitle><addtitle>Genetics</addtitle><date>1998-04-01</date><risdate>1998</risdate><volume>148</volume><issue>4</issue><spage>1627</spage><epage>1635</epage><pages>1627-1635</pages><issn>0016-6731</issn><issn>1943-2631</issn><eissn>1943-2631</eissn><coden>GENTAE</coden><abstract>When 3 x 10(8) bacteria of the Escherichia coli tyrA14(oc) leu308(am) strain WU3610 are plated on glucose salts agar supplemented with leucine only, colonies of slow-growing Tyr+ suppressor mutants begin to appear after about a week and increase in numbers roughly linearly with time thereafter (stationary phase or starvation-associated mutation). From a library constructed from two of these mutants, a clone was obtained that suppressed the tyrosine requirement of WU3610 when present on a multicopy plasmid. The activity was identified to an open reading frame we call tas, the sequence for which has homology with a variety of known genes with aldo-keto reductase activity. The activity of tas complements the prephenate dehydrogenase dysfunction of tyrA14 (the chorismate mutase activity of tyrA possibly being still functional). A strain deleted for tas showed no spontaneous mutation under starvation conditions. Whereas neither tas+ nor tas bacteria showed any increase in viable or total count when plated under conditions of tyrosine starvation at 3 x 10(8) cells per plate, at lower density (approximately 10(7) per plate) tas+ but not tas bacteria showed considerable residual growth. We suggest that the single copy of tas present in WU3610 allows cryptic cell or DNA turnover under conditions of tyrosine starvation and that this is an essential prerequisite for starvation-associated mutation in this system. The target gene for mutation is not tas, although an increase in the expression of this gene, for example, resulting from a suppressor mutation affecting supercoiling, could be responsible for the slow-growing Tyr+ phenotype.</abstract><cop>United States</cop><pub>Genetics Soc America</pub><pmid>9560382</pmid><doi>10.1093/genetics/148.4.1627</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0016-6731
ispartof Genetics (Austin), 1998-04, Vol.148 (4), p.1627-1635
issn 0016-6731
1943-2631
1943-2631
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1460079
source Oxford University Press Journals All Titles (1996-Current); MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection
subjects Alcohol Oxidoreductases - genetics
Aldehyde Reductase
Aldo-Keto Reductases
Animals
Bacteria
Base Sequence
Cloning, Molecular
Culture Media
DNA, Bacterial
Escherichia coli - genetics
Escherichia coli - growth & development
Escherichia coli - metabolism
Gene Deletion
Genes
Genes, Bacterial
Genetic Complementation Test
Genetics
Humans
Molecular Sequence Data
Mutation
Prephenate Dehydrogenase - genetics
Starvation
Tyrosine - metabolism
title Reversion of the Tyrosine Ochre Strain Escherichia coli WU3610 under Starvation Conditions Depends on a New Gene tas
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-08T04%3A47%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Reversion%20of%20the%20Tyrosine%20Ochre%20Strain%20Escherichia%20coli%20WU3610%20under%20Starvation%20Conditions%20Depends%20on%20a%20New%20Gene%20tas&rft.jtitle=Genetics%20(Austin)&rft.au=Timms,%20Andrew%20R&rft.date=1998-04-01&rft.volume=148&rft.issue=4&rft.spage=1627&rft.epage=1635&rft.pages=1627-1635&rft.issn=0016-6731&rft.eissn=1943-2631&rft.coden=GENTAE&rft_id=info:doi/10.1093/genetics/148.4.1627&rft_dat=%3Cproquest_pubme%3E16401567%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=214134890&rft_id=info:pmid/9560382&rfr_iscdi=true