Transmembrane Peptide-Induced Lipid Sorting and Mechanism of L α -to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics
Molecular dynamics results are presented for a coarse-grain model of 1,2-di-n-alkanoyl- sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar ( L α ) pha...
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Veröffentlicht in: | Biophysical journal 2004-10, Vol.87 (4), p.2107-2115 |
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creator | Nielsen, Steve O. Lopez, Carlos F. Ivanov, Ivaylo Moore, Preston B. Shelley, John C. Klein, Michael L. |
description | Molecular dynamics results are presented for a coarse-grain model of 1,2-di-n-alkanoyl-
sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar (
L
α
) phase. The transmembrane peptide is constructed of hydrophobic sites with hydrophilic caps. The hydrophobic length of the peptide is smaller than the hydrophobic thickness of a bilayer consisting of an equal mixture of long and short alkanoyl tail lipids. When incorporated into the membrane, a meniscus forms in the vicinity of the peptide and the surrounding area is enriched in the short lipid. The meniscus region draws water into it. In the regions that are depleted of water, the bilayers can fuse. The lipid headgroups then rearrange to solvate the newly formed water pores, resulting in an inverted phase. This mechanism appears to be a viable pathway for the experimentally observed
L
α
-to-inverse hexagonal (
H
II) peptide-induced phase transition. |
doi_str_mv | 10.1529/biophysj.104.040311 |
format | Article |
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sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar (
L
α
) phase. The transmembrane peptide is constructed of hydrophobic sites with hydrophilic caps. The hydrophobic length of the peptide is smaller than the hydrophobic thickness of a bilayer consisting of an equal mixture of long and short alkanoyl tail lipids. When incorporated into the membrane, a meniscus forms in the vicinity of the peptide and the surrounding area is enriched in the short lipid. The meniscus region draws water into it. In the regions that are depleted of water, the bilayers can fuse. The lipid headgroups then rearrange to solvate the newly formed water pores, resulting in an inverted phase. This mechanism appears to be a viable pathway for the experimentally observed
L
α
-to-inverse hexagonal (
H
II) peptide-induced phase transition.</description><identifier>ISSN: 0006-3495</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1529/biophysj.104.040311</identifier><identifier>PMID: 15454415</identifier><language>eng</language><publisher>Elsevier Inc</publisher><subject>Biophysical Theory and Modeling</subject><ispartof>Biophysical journal, 2004-10, Vol.87 (4), p.2107-2115</ispartof><rights>2004 The Biophysical Society</rights><rights>Copyright © 2004, Biophysical Society 2004</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1304638/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://dx.doi.org/10.1529/biophysj.104.040311$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,3550,27924,27925,45995,53791,53793</link.rule.ids></links><search><creatorcontrib>Nielsen, Steve O.</creatorcontrib><creatorcontrib>Lopez, Carlos F.</creatorcontrib><creatorcontrib>Ivanov, Ivaylo</creatorcontrib><creatorcontrib>Moore, Preston B.</creatorcontrib><creatorcontrib>Shelley, John C.</creatorcontrib><creatorcontrib>Klein, Michael L.</creatorcontrib><title>Transmembrane Peptide-Induced Lipid Sorting and Mechanism of L α -to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics</title><title>Biophysical journal</title><description>Molecular dynamics results are presented for a coarse-grain model of 1,2-di-n-alkanoyl-
sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar (
L
α
) phase. The transmembrane peptide is constructed of hydrophobic sites with hydrophilic caps. The hydrophobic length of the peptide is smaller than the hydrophobic thickness of a bilayer consisting of an equal mixture of long and short alkanoyl tail lipids. When incorporated into the membrane, a meniscus forms in the vicinity of the peptide and the surrounding area is enriched in the short lipid. The meniscus region draws water into it. In the regions that are depleted of water, the bilayers can fuse. The lipid headgroups then rearrange to solvate the newly formed water pores, resulting in an inverted phase. This mechanism appears to be a viable pathway for the experimentally observed
L
α
-to-inverse hexagonal (
H
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sn-glycero-3-phosphocholine, water, and a capped cylindrical model of a transmembrane peptide. We first demonstrate that different alkanoyl-length lipids are miscible in the liquid-disordered lamellar (
L
α
) phase. The transmembrane peptide is constructed of hydrophobic sites with hydrophilic caps. The hydrophobic length of the peptide is smaller than the hydrophobic thickness of a bilayer consisting of an equal mixture of long and short alkanoyl tail lipids. When incorporated into the membrane, a meniscus forms in the vicinity of the peptide and the surrounding area is enriched in the short lipid. The meniscus region draws water into it. In the regions that are depleted of water, the bilayers can fuse. The lipid headgroups then rearrange to solvate the newly formed water pores, resulting in an inverted phase. This mechanism appears to be a viable pathway for the experimentally observed
L
α
-to-inverse hexagonal (
H
II) peptide-induced phase transition.</abstract><pub>Elsevier Inc</pub><pmid>15454415</pmid><doi>10.1529/biophysj.104.040311</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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source | Cell Press Free Archives; ScienceDirect Journals (5 years ago - present); EZB-FREE-00999 freely available EZB journals; PubMed Central |
subjects | Biophysical Theory and Modeling |
title | Transmembrane Peptide-Induced Lipid Sorting and Mechanism of L α -to-Inverted Phase Transition Using Coarse-Grain Molecular Dynamics |
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