Induced Fit in Arginine Kinase
Creatine kinase (CK) and arginine kinase (AK) are related enzymes that reversibly transfer a phosphoryl group between a guanidino compound and ADP. In the buffering of ATP energy levels, they are central to energy metabolism and have been paradigms of classical enzymology. Comparison of the open sub...
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description | Creatine kinase (CK) and arginine kinase (AK) are related enzymes that reversibly transfer a phosphoryl group between a guanidino compound and ADP. In the buffering of ATP energy levels, they are central to energy metabolism and have been paradigms of classical enzymology. Comparison of the open substrate-free structure of CK and the closed substrate-bound structure of AK reveals differences that are consistent with prior biophysical evidence of substrate-induced conformational changes. Large and small domains undergo a hinged 13° rotation. Several loops become ordered and adopt different positions in the presence of substrate, including one (residues 309–319) that moves 15
Å to fold over the substrates. The conformational changes appear to be necessary in aligning the two substrates for catalysis, in configuring the active site only when productive phosphoryl transfer is possible, and excluding water from the active site to avoid wasteful ATP hydrolysis. |
doi_str_mv | 10.1016/S0006-3495(00)76706-3 |
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Å to fold over the substrates. The conformational changes appear to be necessary in aligning the two substrates for catalysis, in configuring the active site only when productive phosphoryl transfer is possible, and excluding water from the active site to avoid wasteful ATP hydrolysis.</description><identifier>ISSN: 0006-3495</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1016/S0006-3495(00)76706-3</identifier><identifier>PMID: 10692338</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Amino Acid Sequence ; Arginine Kinase - chemistry ; Arginine Kinase - metabolism ; Binding Sites ; Biochemistry ; Creatine Kinase - chemistry ; Creatine Kinase - metabolism ; Enzymes ; Image Processing, Computer-Assisted ; Isoenzymes ; Metabolism ; Models, Chemical ; Models, Molecular ; Molecular biology ; Protein Conformation ; Protein Structure, Secondary ; Sequence Alignment ; Sequence Homology, Amino Acid</subject><ispartof>Biophysical journal, 2000-03, Vol.78 (3), p.1541-1550</ispartof><rights>2000 The Biophysical Society</rights><rights>Copyright Biophysical Society Mar 2000</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c490t-68fa921ee2c4c2ed4607c48d8f877d7d5fdd50299ddcceca3e7f7fc7ba85e7943</citedby><cites>FETCH-LOGICAL-c490t-68fa921ee2c4c2ed4607c48d8f877d7d5fdd50299ddcceca3e7f7fc7ba85e7943</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1300751/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://dx.doi.org/10.1016/S0006-3495(00)76706-3$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,3548,27922,27923,45993,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10692338$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhou, Genfa</creatorcontrib><creatorcontrib>Ellington, W. Ross</creatorcontrib><creatorcontrib>Chapman, Michael S.</creatorcontrib><title>Induced Fit in Arginine Kinase</title><title>Biophysical journal</title><addtitle>Biophys J</addtitle><description>Creatine kinase (CK) and arginine kinase (AK) are related enzymes that reversibly transfer a phosphoryl group between a guanidino compound and ADP. In the buffering of ATP energy levels, they are central to energy metabolism and have been paradigms of classical enzymology. Comparison of the open substrate-free structure of CK and the closed substrate-bound structure of AK reveals differences that are consistent with prior biophysical evidence of substrate-induced conformational changes. Large and small domains undergo a hinged 13° rotation. Several loops become ordered and adopt different positions in the presence of substrate, including one (residues 309–319) that moves 15
Å to fold over the substrates. The conformational changes appear to be necessary in aligning the two substrates for catalysis, in configuring the active site only when productive phosphoryl transfer is possible, and excluding water from the active site to avoid wasteful ATP hydrolysis.</description><subject>Amino Acid Sequence</subject><subject>Arginine Kinase - chemistry</subject><subject>Arginine Kinase - metabolism</subject><subject>Binding Sites</subject><subject>Biochemistry</subject><subject>Creatine Kinase - chemistry</subject><subject>Creatine Kinase - metabolism</subject><subject>Enzymes</subject><subject>Image Processing, Computer-Assisted</subject><subject>Isoenzymes</subject><subject>Metabolism</subject><subject>Models, Chemical</subject><subject>Models, Molecular</subject><subject>Molecular biology</subject><subject>Protein Conformation</subject><subject>Protein Structure, Secondary</subject><subject>Sequence Alignment</subject><subject>Sequence Homology, Amino Acid</subject><issn>0006-3495</issn><issn>1542-0086</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2000</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqFkU1LAzEQhoMotlZ_gqV4ED2sTrKbzeaiSLEqFjyo55AmszXSZjXZFfz3bj8o1YunEPLMOzNPCDmmcEGB5pfPAJAnaSb5GcC5yMXitkO6lGcsASjyXdLdIB1yEOM7AGUc6D7pUMglS9OiS_oP3jYG7WDk6oHzg5swdd55HDw6ryMekr1SzyIerc8eeR3dvgzvk_HT3cPwZpyYTEKd5EWpJaOIzGSGoc1yECYrbFEWQlhheWktByaltcag0SmKUpRGTHTBUcgs7ZGrVe5HM5mjNejroGfqI7i5Dt-q0k79fvHuTU2rL0VTAMFpG3C6DgjVZ4OxVnMXDc5m2mPVRCWg7SKkbMGTP-B71QTfLqcY5YJBzhfj8BVkQhVjwHIzCQW10K-W-tXCrQJQS_0qbev622tsVa18t8D1CsBW5pfDoKJx6NsPcAFNrWzl_mnxAzlwk-c</recordid><startdate>20000301</startdate><enddate>20000301</enddate><creator>Zhou, Genfa</creator><creator>Ellington, W. 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Several loops become ordered and adopt different positions in the presence of substrate, including one (residues 309–319) that moves 15
Å to fold over the substrates. The conformational changes appear to be necessary in aligning the two substrates for catalysis, in configuring the active site only when productive phosphoryl transfer is possible, and excluding water from the active site to avoid wasteful ATP hydrolysis.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>10692338</pmid><doi>10.1016/S0006-3495(00)76706-3</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Arginine Kinase - chemistry Arginine Kinase - metabolism Binding Sites Biochemistry Creatine Kinase - chemistry Creatine Kinase - metabolism Enzymes Image Processing, Computer-Assisted Isoenzymes Metabolism Models, Chemical Models, Molecular Molecular biology Protein Conformation Protein Structure, Secondary Sequence Alignment Sequence Homology, Amino Acid |
title | Induced Fit in Arginine Kinase |
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