Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023
In 2016, genomic profiling was implemented for patients with grade 4 primary brain tumors at Rigshospitalet, Denmark. The aim of this study was to discover actionable alterations and to match these with targeted therapies. Between January 2016 and December 2023, 483 brain tumor patients were profile...
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Veröffentlicht in: | Neuro-oncology practice 2025-02, Vol.12 (1), p.34-44 |
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creator | Fougner, Vincent Urup, Thomas Poulsen, Hans Skovgaard Grunnet, Kirsten Westmose, Christina Yde Melchior, Linea Cecilie Larsen, Karen Bonde Højgaard, Martin Spanggaard, Iben Belcaid, Laila Rohrberg, Kristoffer Staal Lassen, Ulrik Hasselbalch, Benedikte Nørøxe, Dorte Schou |
description | In 2016, genomic profiling was implemented for patients with grade 4 primary brain tumors at Rigshospitalet, Denmark. The aim of this study was to discover actionable alterations and to match these with targeted therapies.
Between January 2016 and December 2023, 483 brain tumor patients were profiled. We retrieved clinical data and molecular data. Whole exome, whole genome, or panel sequencing, along with SNP array analyses, and RNA-seq were performed on resected primary tumor tissue. Alterations were classified according to the European Society for Medical Oncology (ESMO) Scale for Clinical Actionability of Molecular Targets (ESCAT) following the European Association of Neuro-Oncology (EANO) guideline on rational molecular testing.
A total of 200 (41.4%) patients' tumors harbored an alteration of interest according to the EANO guideline. Twenty (4.1%) patients had an ESCAT high-tier alteration (tier I or II), while 155 patients (32.1%) had an alteration corresponding to ESCAT IIIA. Thirty-five patients (7.2%) had an actionable alteration, and 15 (3.1%) received targeted therapy. The treated targets were BRAFV600E mutations, FGFR alterations, NTRK fusions, PDGFRA fusions, PTPRZ1-MET fusions, and TMB-high. The overall response rate was 20%, with a median duration of response of 12 months, and 47% achieved stable disease as the best response.
Genomic profiling uncovers alterations of interest in a substantial number of patients, but only a minority are considered by the Danish National Molecular Tumor Board to have actionable alterations, and even fewer receive targeted therapy. Nevertheless, factors, such as promising targets and the increasing availability of trials, may contribute to a future increase in the number of patients benefiting from targeted therapies based on genomic profiling. |
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Between January 2016 and December 2023, 483 brain tumor patients were profiled. We retrieved clinical data and molecular data. Whole exome, whole genome, or panel sequencing, along with SNP array analyses, and RNA-seq were performed on resected primary tumor tissue. Alterations were classified according to the European Society for Medical Oncology (ESMO) Scale for Clinical Actionability of Molecular Targets (ESCAT) following the European Association of Neuro-Oncology (EANO) guideline on rational molecular testing.
A total of 200 (41.4%) patients' tumors harbored an alteration of interest according to the EANO guideline. Twenty (4.1%) patients had an ESCAT high-tier alteration (tier I or II), while 155 patients (32.1%) had an alteration corresponding to ESCAT IIIA. Thirty-five patients (7.2%) had an actionable alteration, and 15 (3.1%) received targeted therapy. The treated targets were BRAFV600E mutations, FGFR alterations, NTRK fusions, PDGFRA fusions, PTPRZ1-MET fusions, and TMB-high. The overall response rate was 20%, with a median duration of response of 12 months, and 47% achieved stable disease as the best response.
Genomic profiling uncovers alterations of interest in a substantial number of patients, but only a minority are considered by the Danish National Molecular Tumor Board to have actionable alterations, and even fewer receive targeted therapy. Nevertheless, factors, such as promising targets and the increasing availability of trials, may contribute to a future increase in the number of patients benefiting from targeted therapies based on genomic profiling.</description><identifier>ISSN: 2054-2577</identifier><identifier>EISSN: 2054-2585</identifier><identifier>DOI: 10.1093/nop/npae082</identifier><identifier>PMID: 39917766</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Clinical Investigations</subject><ispartof>Neuro-oncology practice, 2025-02, Vol.12 (1), p.34-44</ispartof><rights>The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Neuro-Oncology and the European Association of Neuro-Oncology.</rights><rights>The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Neuro-Oncology and the European Association of Neuro-Oncology. 2024</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c233t-7fead626300b97d99423fcef9e0df8c992334a9c1f406ebee5d355c2bb38e3ab3</cites><orcidid>0000-0002-9801-5387 ; 0000-0001-7061-8859 ; 0009-0004-7544-9838</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39917766$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fougner, Vincent</creatorcontrib><creatorcontrib>Urup, Thomas</creatorcontrib><creatorcontrib>Poulsen, Hans Skovgaard</creatorcontrib><creatorcontrib>Grunnet, Kirsten</creatorcontrib><creatorcontrib>Westmose, Christina Yde</creatorcontrib><creatorcontrib>Melchior, Linea Cecilie</creatorcontrib><creatorcontrib>Larsen, Karen Bonde</creatorcontrib><creatorcontrib>Højgaard, Martin</creatorcontrib><creatorcontrib>Spanggaard, Iben</creatorcontrib><creatorcontrib>Belcaid, Laila</creatorcontrib><creatorcontrib>Rohrberg, Kristoffer Staal</creatorcontrib><creatorcontrib>Lassen, Ulrik</creatorcontrib><creatorcontrib>Hasselbalch, Benedikte</creatorcontrib><creatorcontrib>Nørøxe, Dorte Schou</creatorcontrib><title>Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023</title><title>Neuro-oncology practice</title><addtitle>Neurooncol Pract</addtitle><description>In 2016, genomic profiling was implemented for patients with grade 4 primary brain tumors at Rigshospitalet, Denmark. The aim of this study was to discover actionable alterations and to match these with targeted therapies.
Between January 2016 and December 2023, 483 brain tumor patients were profiled. We retrieved clinical data and molecular data. Whole exome, whole genome, or panel sequencing, along with SNP array analyses, and RNA-seq were performed on resected primary tumor tissue. Alterations were classified according to the European Society for Medical Oncology (ESMO) Scale for Clinical Actionability of Molecular Targets (ESCAT) following the European Association of Neuro-Oncology (EANO) guideline on rational molecular testing.
A total of 200 (41.4%) patients' tumors harbored an alteration of interest according to the EANO guideline. Twenty (4.1%) patients had an ESCAT high-tier alteration (tier I or II), while 155 patients (32.1%) had an alteration corresponding to ESCAT IIIA. Thirty-five patients (7.2%) had an actionable alteration, and 15 (3.1%) received targeted therapy. The treated targets were BRAFV600E mutations, FGFR alterations, NTRK fusions, PDGFRA fusions, PTPRZ1-MET fusions, and TMB-high. The overall response rate was 20%, with a median duration of response of 12 months, and 47% achieved stable disease as the best response.
Genomic profiling uncovers alterations of interest in a substantial number of patients, but only a minority are considered by the Danish National Molecular Tumor Board to have actionable alterations, and even fewer receive targeted therapy. Nevertheless, factors, such as promising targets and the increasing availability of trials, may contribute to a future increase in the number of patients benefiting from targeted therapies based on genomic profiling.</description><subject>Clinical Investigations</subject><issn>2054-2577</issn><issn>2054-2585</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><recordid>eNpVkU1r3DAQhkVpaUKSU-5Fx0LZRh-2bPVSQuhHIJBLcxZjeeRVkSVX0hb6C_q3681ul_Y0M8wz77zwEnLN2XvOtLyJabmJCyDrxQtyLljbbETbty9PfdedkatSvjPGuFRc9vo1OZNa865T6pz8vrXVpwhDQAqhYob9WKiPdAo-DQFKTTN8oPex-GlbC3U5zbRukfp5CThjrM8nNDk6YUyzt3TJyfng40ShPKOlQhwhj3vIQsaDiGBc0ZrWKuQleeUgFLw61gvy9PnTt7uvm4fHL_d3tw8bK6Ssm84hjEooydigu1HrRkhn0Wlko-ut1ivVgLbcNUzhgNiOsm2tGAbZo4RBXpCPB91lN8w42tV-hmCW7GfIv0wCb_7fRL81U_ppOO90r1i3Krw9KuT0Y4elmtkXiyFAxLQrRnLVNIw1co--O6A2p1IyutMfzsw-PrPGZ47xrfSbf62d2L9hyT8Y3pn7</recordid><startdate>202502</startdate><enddate>202502</enddate><creator>Fougner, Vincent</creator><creator>Urup, Thomas</creator><creator>Poulsen, Hans Skovgaard</creator><creator>Grunnet, Kirsten</creator><creator>Westmose, Christina Yde</creator><creator>Melchior, Linea Cecilie</creator><creator>Larsen, Karen Bonde</creator><creator>Højgaard, Martin</creator><creator>Spanggaard, Iben</creator><creator>Belcaid, Laila</creator><creator>Rohrberg, Kristoffer Staal</creator><creator>Lassen, Ulrik</creator><creator>Hasselbalch, Benedikte</creator><creator>Nørøxe, Dorte Schou</creator><general>Oxford University Press</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9801-5387</orcidid><orcidid>https://orcid.org/0000-0001-7061-8859</orcidid><orcidid>https://orcid.org/0009-0004-7544-9838</orcidid></search><sort><creationdate>202502</creationdate><title>Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023</title><author>Fougner, Vincent ; Urup, Thomas ; Poulsen, Hans Skovgaard ; Grunnet, Kirsten ; Westmose, Christina Yde ; Melchior, Linea Cecilie ; Larsen, Karen Bonde ; Højgaard, Martin ; Spanggaard, Iben ; Belcaid, Laila ; Rohrberg, Kristoffer Staal ; Lassen, Ulrik ; Hasselbalch, Benedikte ; Nørøxe, Dorte Schou</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c233t-7fead626300b97d99423fcef9e0df8c992334a9c1f406ebee5d355c2bb38e3ab3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2025</creationdate><topic>Clinical Investigations</topic><toplevel>online_resources</toplevel><creatorcontrib>Fougner, Vincent</creatorcontrib><creatorcontrib>Urup, Thomas</creatorcontrib><creatorcontrib>Poulsen, Hans Skovgaard</creatorcontrib><creatorcontrib>Grunnet, Kirsten</creatorcontrib><creatorcontrib>Westmose, Christina Yde</creatorcontrib><creatorcontrib>Melchior, Linea Cecilie</creatorcontrib><creatorcontrib>Larsen, Karen Bonde</creatorcontrib><creatorcontrib>Højgaard, Martin</creatorcontrib><creatorcontrib>Spanggaard, Iben</creatorcontrib><creatorcontrib>Belcaid, Laila</creatorcontrib><creatorcontrib>Rohrberg, Kristoffer Staal</creatorcontrib><creatorcontrib>Lassen, Ulrik</creatorcontrib><creatorcontrib>Hasselbalch, Benedikte</creatorcontrib><creatorcontrib>Nørøxe, Dorte Schou</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Neuro-oncology practice</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fougner, Vincent</au><au>Urup, Thomas</au><au>Poulsen, Hans Skovgaard</au><au>Grunnet, Kirsten</au><au>Westmose, Christina Yde</au><au>Melchior, Linea Cecilie</au><au>Larsen, Karen Bonde</au><au>Højgaard, Martin</au><au>Spanggaard, Iben</au><au>Belcaid, Laila</au><au>Rohrberg, Kristoffer Staal</au><au>Lassen, Ulrik</au><au>Hasselbalch, Benedikte</au><au>Nørøxe, Dorte Schou</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023</atitle><jtitle>Neuro-oncology practice</jtitle><addtitle>Neurooncol Pract</addtitle><date>2025-02</date><risdate>2025</risdate><volume>12</volume><issue>1</issue><spage>34</spage><epage>44</epage><pages>34-44</pages><issn>2054-2577</issn><eissn>2054-2585</eissn><abstract>In 2016, genomic profiling was implemented for patients with grade 4 primary brain tumors at Rigshospitalet, Denmark. The aim of this study was to discover actionable alterations and to match these with targeted therapies.
Between January 2016 and December 2023, 483 brain tumor patients were profiled. We retrieved clinical data and molecular data. Whole exome, whole genome, or panel sequencing, along with SNP array analyses, and RNA-seq were performed on resected primary tumor tissue. Alterations were classified according to the European Society for Medical Oncology (ESMO) Scale for Clinical Actionability of Molecular Targets (ESCAT) following the European Association of Neuro-Oncology (EANO) guideline on rational molecular testing.
A total of 200 (41.4%) patients' tumors harbored an alteration of interest according to the EANO guideline. Twenty (4.1%) patients had an ESCAT high-tier alteration (tier I or II), while 155 patients (32.1%) had an alteration corresponding to ESCAT IIIA. Thirty-five patients (7.2%) had an actionable alteration, and 15 (3.1%) received targeted therapy. The treated targets were BRAFV600E mutations, FGFR alterations, NTRK fusions, PDGFRA fusions, PTPRZ1-MET fusions, and TMB-high. The overall response rate was 20%, with a median duration of response of 12 months, and 47% achieved stable disease as the best response.
Genomic profiling uncovers alterations of interest in a substantial number of patients, but only a minority are considered by the Danish National Molecular Tumor Board to have actionable alterations, and even fewer receive targeted therapy. Nevertheless, factors, such as promising targets and the increasing availability of trials, may contribute to a future increase in the number of patients benefiting from targeted therapies based on genomic profiling.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>39917766</pmid><doi>10.1093/nop/npae082</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-9801-5387</orcidid><orcidid>https://orcid.org/0000-0001-7061-8859</orcidid><orcidid>https://orcid.org/0009-0004-7544-9838</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Clinical Investigations |
title | Actionable alterations in glioblastoma: Insights from the implementation of genomic profiling as the standard of care from 2016 to 2023 |
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