Chromatin immunoselection defines a TAL-1 target gene
Despite the major functions of the basic helix–loop–helix transcription factor TAL‐1 in hematopoiesis and T‐cell leukemogenesis, no TAL‐1 target gene has been identified. Using immunoprecipitation of genomic fragments bound to TAL‐1 in the chromatin of murine erythro‐leukemia (MEL) cells, we found t...
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Veröffentlicht in: | The EMBO journal 1998-09, Vol.17 (17), p.5151-5160 |
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creator | Cohen-Kaminsky, Sylvia Maouche-Chrétien, Leïla Vitelli, Luigi Vinit, Marie-Antoinette Blanchard, Isabelle Yamamoto, Masayugi Peschle, Cesare Roméo, Paul-Henri |
description | Despite the major functions of the basic helix–loop–helix transcription factor TAL‐1 in hematopoiesis and T‐cell leukemogenesis, no TAL‐1 target gene has been identified. Using immunoprecipitation of genomic fragments bound to TAL‐1 in the chromatin of murine erythro‐leukemia (MEL) cells, we found that 10% of the immunoselected fragments contained a CAGATG or a CAGGTG E‐box, followed by a GATA site. We studied one of these fragments containing two E‐boxes, CAGATG and CAGGTC, followed by a GATA motif, and showed that TAL‐1 binds to the CAGGTG E‐box with an affinity modulated by the CAGATG or the GATA site, and that the CAGGTG–GATA motif exhibits positive transcriptional activity in MEL but not in HeLa cells. This immunoselected sequence is located within an intron of a new gene co‐expressed with TAL‐1 in endothelial and erythroid cells, but not expressed in fibroblasts or adult liver where no TAL‐1 mRNA was detected. Finally,
in vitro
differentiation of embryonic stem cells towards the erythro/megakaryocytic pathways showed that the TAL‐1 target gene expression followed TAL‐1 and GATA‐1 expression. These results establish that TAL‐1 is likely to activate its target genes through a complex that binds an E‐box–GATA motif and define the first gene regulated by TAL‐1. |
doi_str_mv | 10.1093/emboj/17.17.5151 |
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in vitro
differentiation of embryonic stem cells towards the erythro/megakaryocytic pathways showed that the TAL‐1 target gene expression followed TAL‐1 and GATA‐1 expression. These results establish that TAL‐1 is likely to activate its target genes through a complex that binds an E‐box–GATA motif and define the first gene regulated by TAL‐1.</description><identifier>ISSN: 0261-4189</identifier><identifier>ISSN: 1460-2075</identifier><identifier>EISSN: 1460-2075</identifier><identifier>DOI: 10.1093/emboj/17.17.5151</identifier><identifier>PMID: 9724651</identifier><language>eng</language><publisher>Chichester, UK: John Wiley & Sons, Ltd</publisher><subject>Amino Acid Sequence ; Animals ; Base Sequence ; Basic Helix-Loop-Helix Transcription Factors ; Binding Sites ; Cell Differentiation ; Chromatin - metabolism ; chromatin immunoprecipitation ; DNA-Binding Proteins - metabolism ; Erythroid-Specific DNA-Binding Factors ; GATA motif ; GATA1 Transcription Factor ; Gene Expression Regulation ; Gene Expression Regulation, Neoplastic ; HeLa Cells ; Helix-Loop-Helix Motifs ; hematopoiesis ; Hematopoiesis - genetics ; Hematopoietic Stem Cells - cytology ; Hematopoietic Stem Cells - metabolism ; Humans ; Leukemia, Erythroblastic, Acute - genetics ; Leukemia-Lymphoma, Adult T-Cell - genetics ; MEL cells ; Mice ; Molecular Sequence Data ; Precipitin Tests ; Protein Binding ; Proto-Oncogene Proteins ; T-Cell Acute Lymphocytic Leukemia Protein 1 ; TAL-1 target genes ; Transcription Factors - metabolism</subject><ispartof>The EMBO journal, 1998-09, Vol.17 (17), p.5151-5160</ispartof><rights>European Molecular Biology Organization 1998</rights><rights>Copyright © 1998 European Molecular Biology Organization</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5520-92604ee667c896763ad5bdedc3472d9167a8337b732f62dfbde4fe908aa9e8c03</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1170843/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1170843/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,1411,1427,27901,27902,45550,45551,46384,46808,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9724651$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cohen-Kaminsky, Sylvia</creatorcontrib><creatorcontrib>Maouche-Chrétien, Leïla</creatorcontrib><creatorcontrib>Vitelli, Luigi</creatorcontrib><creatorcontrib>Vinit, Marie-Antoinette</creatorcontrib><creatorcontrib>Blanchard, Isabelle</creatorcontrib><creatorcontrib>Yamamoto, Masayugi</creatorcontrib><creatorcontrib>Peschle, Cesare</creatorcontrib><creatorcontrib>Roméo, Paul-Henri</creatorcontrib><title>Chromatin immunoselection defines a TAL-1 target gene</title><title>The EMBO journal</title><addtitle>EMBO J</addtitle><addtitle>EMBO J</addtitle><description>Despite the major functions of the basic helix–loop–helix transcription factor TAL‐1 in hematopoiesis and T‐cell leukemogenesis, no TAL‐1 target gene has been identified. Using immunoprecipitation of genomic fragments bound to TAL‐1 in the chromatin of murine erythro‐leukemia (MEL) cells, we found that 10% of the immunoselected fragments contained a CAGATG or a CAGGTG E‐box, followed by a GATA site. We studied one of these fragments containing two E‐boxes, CAGATG and CAGGTC, followed by a GATA motif, and showed that TAL‐1 binds to the CAGGTG E‐box with an affinity modulated by the CAGATG or the GATA site, and that the CAGGTG–GATA motif exhibits positive transcriptional activity in MEL but not in HeLa cells. This immunoselected sequence is located within an intron of a new gene co‐expressed with TAL‐1 in endothelial and erythroid cells, but not expressed in fibroblasts or adult liver where no TAL‐1 mRNA was detected. Finally,
in vitro
differentiation of embryonic stem cells towards the erythro/megakaryocytic pathways showed that the TAL‐1 target gene expression followed TAL‐1 and GATA‐1 expression. These results establish that TAL‐1 is likely to activate its target genes through a complex that binds an E‐box–GATA motif and define the first gene regulated by TAL‐1.</description><subject>Amino Acid Sequence</subject><subject>Animals</subject><subject>Base Sequence</subject><subject>Basic Helix-Loop-Helix Transcription Factors</subject><subject>Binding Sites</subject><subject>Cell Differentiation</subject><subject>Chromatin - metabolism</subject><subject>chromatin immunoprecipitation</subject><subject>DNA-Binding Proteins - metabolism</subject><subject>Erythroid-Specific DNA-Binding Factors</subject><subject>GATA motif</subject><subject>GATA1 Transcription Factor</subject><subject>Gene Expression Regulation</subject><subject>Gene Expression Regulation, Neoplastic</subject><subject>HeLa Cells</subject><subject>Helix-Loop-Helix Motifs</subject><subject>hematopoiesis</subject><subject>Hematopoiesis - genetics</subject><subject>Hematopoietic Stem Cells - cytology</subject><subject>Hematopoietic Stem Cells - metabolism</subject><subject>Humans</subject><subject>Leukemia, Erythroblastic, Acute - genetics</subject><subject>Leukemia-Lymphoma, Adult T-Cell - genetics</subject><subject>MEL cells</subject><subject>Mice</subject><subject>Molecular Sequence Data</subject><subject>Precipitin Tests</subject><subject>Protein Binding</subject><subject>Proto-Oncogene Proteins</subject><subject>T-Cell Acute Lymphocytic Leukemia Protein 1</subject><subject>TAL-1 target genes</subject><subject>Transcription Factors - metabolism</subject><issn>0261-4189</issn><issn>1460-2075</issn><issn>1460-2075</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc1v1DAQxS0EKtvCnQtSTtzSeuzYji9IsLSFVSmXpT1a3mSy9ZLYxU768d-TbVYruFBpJB_e_J7f6BHyDugxUM1PsFuFzQmo43EECHhBZlBImjOqxEsyo0xCXkCpX5PDlDaUUlEqOCAHWrFCCpgRMb-JobO985nrusGHhC1WvQs-q7FxHlNms-Wnixyy3sY19tkaPb4hrxrbJny7e4_Iz7PT5fxrfvHj_Nt83K6EYDTXTNICUUpVlVoqyW0tVjXWFS8UqzVIZUvO1Upx1khWN6NWNKhpaa3GsqL8iHycfG-HVTdy6PtoW3MbXWfjownWmX8V727MOtwZAEXLgo8GH3YGMfweMPWmc6nCtrUew5CM4pqyAuiziyCFEFxuHem0WMWQUsRmnwao2XZinjoxoLaz7WRE3v99xR7YlTDqetLvXYuPz_qZ0--fF0poYE-5YWLTiPk1RrMJQ_RjKf_Lk0-MSz0-7P-z8ZeRiithri_PjV6cXfEvy4W55H8AE965lA</recordid><startdate>19980901</startdate><enddate>19980901</enddate><creator>Cohen-Kaminsky, Sylvia</creator><creator>Maouche-Chrétien, Leïla</creator><creator>Vitelli, Luigi</creator><creator>Vinit, Marie-Antoinette</creator><creator>Blanchard, Isabelle</creator><creator>Yamamoto, Masayugi</creator><creator>Peschle, Cesare</creator><creator>Roméo, Paul-Henri</creator><general>John Wiley & Sons, Ltd</general><general>Nature Publishing Group UK</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7TM</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19980901</creationdate><title>Chromatin immunoselection defines a TAL-1 target gene</title><author>Cohen-Kaminsky, Sylvia ; Maouche-Chrétien, Leïla ; Vitelli, Luigi ; Vinit, Marie-Antoinette ; Blanchard, Isabelle ; Yamamoto, Masayugi ; Peschle, Cesare ; Roméo, Paul-Henri</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5520-92604ee667c896763ad5bdedc3472d9167a8337b732f62dfbde4fe908aa9e8c03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Amino Acid Sequence</topic><topic>Animals</topic><topic>Base Sequence</topic><topic>Basic Helix-Loop-Helix Transcription Factors</topic><topic>Binding Sites</topic><topic>Cell Differentiation</topic><topic>Chromatin - metabolism</topic><topic>chromatin immunoprecipitation</topic><topic>DNA-Binding Proteins - metabolism</topic><topic>Erythroid-Specific DNA-Binding Factors</topic><topic>GATA motif</topic><topic>GATA1 Transcription Factor</topic><topic>Gene Expression Regulation</topic><topic>Gene Expression Regulation, Neoplastic</topic><topic>HeLa Cells</topic><topic>Helix-Loop-Helix Motifs</topic><topic>hematopoiesis</topic><topic>Hematopoiesis - genetics</topic><topic>Hematopoietic Stem Cells - cytology</topic><topic>Hematopoietic Stem Cells - metabolism</topic><topic>Humans</topic><topic>Leukemia, Erythroblastic, Acute - genetics</topic><topic>Leukemia-Lymphoma, Adult T-Cell - genetics</topic><topic>MEL cells</topic><topic>Mice</topic><topic>Molecular Sequence Data</topic><topic>Precipitin Tests</topic><topic>Protein Binding</topic><topic>Proto-Oncogene Proteins</topic><topic>T-Cell Acute Lymphocytic Leukemia Protein 1</topic><topic>TAL-1 target genes</topic><topic>Transcription Factors - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cohen-Kaminsky, Sylvia</creatorcontrib><creatorcontrib>Maouche-Chrétien, Leïla</creatorcontrib><creatorcontrib>Vitelli, Luigi</creatorcontrib><creatorcontrib>Vinit, Marie-Antoinette</creatorcontrib><creatorcontrib>Blanchard, Isabelle</creatorcontrib><creatorcontrib>Yamamoto, Masayugi</creatorcontrib><creatorcontrib>Peschle, Cesare</creatorcontrib><creatorcontrib>Roméo, Paul-Henri</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Nucleic Acids Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>The EMBO journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cohen-Kaminsky, Sylvia</au><au>Maouche-Chrétien, Leïla</au><au>Vitelli, Luigi</au><au>Vinit, Marie-Antoinette</au><au>Blanchard, Isabelle</au><au>Yamamoto, Masayugi</au><au>Peschle, Cesare</au><au>Roméo, Paul-Henri</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chromatin immunoselection defines a TAL-1 target gene</atitle><jtitle>The EMBO journal</jtitle><stitle>EMBO J</stitle><addtitle>EMBO J</addtitle><date>1998-09-01</date><risdate>1998</risdate><volume>17</volume><issue>17</issue><spage>5151</spage><epage>5160</epage><pages>5151-5160</pages><issn>0261-4189</issn><issn>1460-2075</issn><eissn>1460-2075</eissn><abstract>Despite the major functions of the basic helix–loop–helix transcription factor TAL‐1 in hematopoiesis and T‐cell leukemogenesis, no TAL‐1 target gene has been identified. Using immunoprecipitation of genomic fragments bound to TAL‐1 in the chromatin of murine erythro‐leukemia (MEL) cells, we found that 10% of the immunoselected fragments contained a CAGATG or a CAGGTG E‐box, followed by a GATA site. We studied one of these fragments containing two E‐boxes, CAGATG and CAGGTC, followed by a GATA motif, and showed that TAL‐1 binds to the CAGGTG E‐box with an affinity modulated by the CAGATG or the GATA site, and that the CAGGTG–GATA motif exhibits positive transcriptional activity in MEL but not in HeLa cells. This immunoselected sequence is located within an intron of a new gene co‐expressed with TAL‐1 in endothelial and erythroid cells, but not expressed in fibroblasts or adult liver where no TAL‐1 mRNA was detected. Finally,
in vitro
differentiation of embryonic stem cells towards the erythro/megakaryocytic pathways showed that the TAL‐1 target gene expression followed TAL‐1 and GATA‐1 expression. These results establish that TAL‐1 is likely to activate its target genes through a complex that binds an E‐box–GATA motif and define the first gene regulated by TAL‐1.</abstract><cop>Chichester, UK</cop><pub>John Wiley & Sons, Ltd</pub><pmid>9724651</pmid><doi>10.1093/emboj/17.17.5151</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence Animals Base Sequence Basic Helix-Loop-Helix Transcription Factors Binding Sites Cell Differentiation Chromatin - metabolism chromatin immunoprecipitation DNA-Binding Proteins - metabolism Erythroid-Specific DNA-Binding Factors GATA motif GATA1 Transcription Factor Gene Expression Regulation Gene Expression Regulation, Neoplastic HeLa Cells Helix-Loop-Helix Motifs hematopoiesis Hematopoiesis - genetics Hematopoietic Stem Cells - cytology Hematopoietic Stem Cells - metabolism Humans Leukemia, Erythroblastic, Acute - genetics Leukemia-Lymphoma, Adult T-Cell - genetics MEL cells Mice Molecular Sequence Data Precipitin Tests Protein Binding Proto-Oncogene Proteins T-Cell Acute Lymphocytic Leukemia Protein 1 TAL-1 target genes Transcription Factors - metabolism |
title | Chromatin immunoselection defines a TAL-1 target gene |
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