The LCG1‐OsBP5/OsEBP89‐Wx module regulates the grain chalkiness and taste quality in rice
Summary It is well known that the overall quality of japonica/geng rice is superior to that of indica/xian rice varieties. However, the molecular mechanisms underlying the quality disparities between these two subspecies of rice are still largely unknown. In this study, we have pinpointed a gene hom...
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| Veröffentlicht in: | Plant biotechnology journal 2025-01, Vol.23 (1), p.36-50 |
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| creator | Tu, Bin Zhang, Tao Liu, Pin Yang, Wen Zheng, Ling Dai, Ying Wang, Hao Lin, Song Zhang, Zehua Zheng, Xiaohang Yuan, Mengting Chen, Yong Zhu, Xiaobo Yuan, Hua Li, Ting Xiong, Jiawei Zhong, Zhaohui Chen, Weilan Ma, Bingtian Qin, Peng Wang, Yuping Li, Shigui |
| description | Summary
It is well known that the overall quality of japonica/geng rice is superior to that of indica/xian rice varieties. However, the molecular mechanisms underlying the quality disparities between these two subspecies of rice are still largely unknown. In this study, we have pinpointed a gene homologous to SLR1, termed LCG1, exhibiting significant expression during early caryopsis development and playing a specific role in regulating rice chalkiness and taste by affecting the accumulation of grain storage components, starch granule structure and chain length distribution of amylopectin. LCG1 physically interacts with OsBP5 and indirectly influences the expression of the amylose synthesis gene Waxy (Wx) by hindering the transcriptional activity of the OsBP5/OsEBP89 complex. Notably, sequence variations in the promoter region of LCG1 result in enhanced transcription in japonica rice accessions. This leads to elevated LCG1 expression in CSSL‐LCG1Nip, thereby enhancing rice quality. Our research elucidates the molecular mechanism underlying the impact of the LCG1‐OsBP5/OsEBP89‐Wx regulatory pathway on rice chalkiness and taste quality, offering new genetic resources for improving the indica rice quality. |
| doi_str_mv | 10.1111/pbi.14475 |
| format | Article |
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It is well known that the overall quality of japonica/geng rice is superior to that of indica/xian rice varieties. However, the molecular mechanisms underlying the quality disparities between these two subspecies of rice are still largely unknown. In this study, we have pinpointed a gene homologous to SLR1, termed LCG1, exhibiting significant expression during early caryopsis development and playing a specific role in regulating rice chalkiness and taste by affecting the accumulation of grain storage components, starch granule structure and chain length distribution of amylopectin. LCG1 physically interacts with OsBP5 and indirectly influences the expression of the amylose synthesis gene Waxy (Wx) by hindering the transcriptional activity of the OsBP5/OsEBP89 complex. Notably, sequence variations in the promoter region of LCG1 result in enhanced transcription in japonica rice accessions. This leads to elevated LCG1 expression in CSSL‐LCG1Nip, thereby enhancing rice quality. Our research elucidates the molecular mechanism underlying the impact of the LCG1‐OsBP5/OsEBP89‐Wx regulatory pathway on rice chalkiness and taste quality, offering new genetic resources for improving the indica rice quality.</description><identifier>ISSN: 1467-7644</identifier><identifier>ISSN: 1467-7652</identifier><identifier>EISSN: 1467-7652</identifier><identifier>DOI: 10.1111/pbi.14475</identifier><identifier>PMID: 39312475</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Amylopectin ; Amylose ; Biosynthesis ; Chromosomes ; Cloning ; Edible Grain - genetics ; Edible Grain - metabolism ; Gene Expression Regulation, Plant ; Genes ; Genetic resources ; grain chalkiness ; Grain storage ; LCG1 ; Molecular modelling ; Oryza - genetics ; Oryza - growth & development ; Oryza - metabolism ; OsBP5/OsEBP89 complex ; Plant growth ; Plant Proteins - genetics ; Plant Proteins - metabolism ; Proteins ; Regulatory sequences ; Rice ; Signal transduction ; Taste ; taste quality ; Transcription factors ; Waxy gene</subject><ispartof>Plant biotechnology journal, 2025-01, Vol.23 (1), p.36-50</ispartof><rights>2024 The Author(s). published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</rights><rights>2024 The Author(s). Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.</rights><rights>2025. This work is published under http://creativecommons.org/licenses/by-nc-nd/4.0/ (the "License"). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2995-975bc423e9cd162f2d0515026cd2c78852c0d263b2d322360ecf5a48448c59953</cites><orcidid>0000-0002-7111-3235 ; 0000-0002-7187-8123</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Fpbi.14475$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Fpbi.14475$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,860,881,1411,11541,27901,27902,45550,45551,46027,46451</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39312475$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tu, Bin</creatorcontrib><creatorcontrib>Zhang, Tao</creatorcontrib><creatorcontrib>Liu, Pin</creatorcontrib><creatorcontrib>Yang, Wen</creatorcontrib><creatorcontrib>Zheng, Ling</creatorcontrib><creatorcontrib>Dai, Ying</creatorcontrib><creatorcontrib>Wang, Hao</creatorcontrib><creatorcontrib>Lin, Song</creatorcontrib><creatorcontrib>Zhang, Zehua</creatorcontrib><creatorcontrib>Zheng, Xiaohang</creatorcontrib><creatorcontrib>Yuan, Mengting</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Zhu, Xiaobo</creatorcontrib><creatorcontrib>Yuan, Hua</creatorcontrib><creatorcontrib>Li, Ting</creatorcontrib><creatorcontrib>Xiong, Jiawei</creatorcontrib><creatorcontrib>Zhong, Zhaohui</creatorcontrib><creatorcontrib>Chen, Weilan</creatorcontrib><creatorcontrib>Ma, Bingtian</creatorcontrib><creatorcontrib>Qin, Peng</creatorcontrib><creatorcontrib>Wang, Yuping</creatorcontrib><creatorcontrib>Li, Shigui</creatorcontrib><title>The LCG1‐OsBP5/OsEBP89‐Wx module regulates the grain chalkiness and taste quality in rice</title><title>Plant biotechnology journal</title><addtitle>Plant Biotechnol J</addtitle><description>Summary
It is well known that the overall quality of japonica/geng rice is superior to that of indica/xian rice varieties. However, the molecular mechanisms underlying the quality disparities between these two subspecies of rice are still largely unknown. In this study, we have pinpointed a gene homologous to SLR1, termed LCG1, exhibiting significant expression during early caryopsis development and playing a specific role in regulating rice chalkiness and taste by affecting the accumulation of grain storage components, starch granule structure and chain length distribution of amylopectin. LCG1 physically interacts with OsBP5 and indirectly influences the expression of the amylose synthesis gene Waxy (Wx) by hindering the transcriptional activity of the OsBP5/OsEBP89 complex. Notably, sequence variations in the promoter region of LCG1 result in enhanced transcription in japonica rice accessions. This leads to elevated LCG1 expression in CSSL‐LCG1Nip, thereby enhancing rice quality. Our research elucidates the molecular mechanism underlying the impact of the LCG1‐OsBP5/OsEBP89‐Wx regulatory pathway on rice chalkiness and taste quality, offering new genetic resources for improving the indica rice quality.</description><subject>Amylopectin</subject><subject>Amylose</subject><subject>Biosynthesis</subject><subject>Chromosomes</subject><subject>Cloning</subject><subject>Edible Grain - genetics</subject><subject>Edible Grain - metabolism</subject><subject>Gene Expression Regulation, Plant</subject><subject>Genes</subject><subject>Genetic resources</subject><subject>grain chalkiness</subject><subject>Grain storage</subject><subject>LCG1</subject><subject>Molecular modelling</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Oryza - metabolism</subject><subject>OsBP5/OsEBP89 complex</subject><subject>Plant growth</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - metabolism</subject><subject>Proteins</subject><subject>Regulatory sequences</subject><subject>Rice</subject><subject>Signal transduction</subject><subject>Taste</subject><subject>taste quality</subject><subject>Transcription factors</subject><subject>Waxy gene</subject><issn>1467-7644</issn><issn>1467-7652</issn><issn>1467-7652</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2025</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kctqGzEUhkVJaS7toi9QBNkkC8e6a2ZVYpMbGOxFSldFyJpjW6k840gzSbzLI-QZ-yRV6sQ0hWojifPx8R9-hD5TckLz6a-m_oQKoeU7tEeF0j2tJNvZvoXYRfsp3RDCqJLqA9rlJacs83vox_UC8Gh4QX89Po3TYCL743Q2mBRl_n9_wMum6gLgCPMu2BYSbjM-j9bX2C1s-OlrSAnbusKtTS3g284G365xnkfv4CN6P7MhwaeX-wB9Oz-7Hl72RuOLq-HpqOdYWcpeqeXUCcahdBVVbMYqIqkkTLmKOV0UkjlSMcWnrOKMcUXAzaQVhRCFk1nAD9DXjXfVTZdQOajbaINZRb-0cW0a683bSe0XZt7cGUqVZprzbDh6McTmtoPUmqVPDkKwNTRdMpySQqucgWb08B_0pulinffLlCgZIZqLTB1vKBeblCLMtmkoMc-tmdya-dNaZr_8HX9LvtaUgf4GuPcB1v83mcngaqP8DdqToM8</recordid><startdate>202501</startdate><enddate>202501</enddate><creator>Tu, Bin</creator><creator>Zhang, Tao</creator><creator>Liu, Pin</creator><creator>Yang, Wen</creator><creator>Zheng, Ling</creator><creator>Dai, Ying</creator><creator>Wang, Hao</creator><creator>Lin, Song</creator><creator>Zhang, Zehua</creator><creator>Zheng, Xiaohang</creator><creator>Yuan, Mengting</creator><creator>Chen, Yong</creator><creator>Zhu, Xiaobo</creator><creator>Yuan, Hua</creator><creator>Li, Ting</creator><creator>Xiong, Jiawei</creator><creator>Zhong, Zhaohui</creator><creator>Chen, Weilan</creator><creator>Ma, Bingtian</creator><creator>Qin, Peng</creator><creator>Wang, Yuping</creator><creator>Li, Shigui</creator><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>L6V</scope><scope>LK8</scope><scope>M7P</scope><scope>M7S</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>PTHSS</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7111-3235</orcidid><orcidid>https://orcid.org/0000-0002-7187-8123</orcidid></search><sort><creationdate>202501</creationdate><title>The LCG1‐OsBP5/OsEBP89‐Wx module regulates the grain chalkiness and taste quality in rice</title><author>Tu, Bin ; Zhang, Tao ; Liu, Pin ; Yang, Wen ; Zheng, Ling ; Dai, Ying ; Wang, Hao ; Lin, Song ; Zhang, Zehua ; Zheng, Xiaohang ; Yuan, Mengting ; Chen, Yong ; Zhu, Xiaobo ; Yuan, Hua ; Li, Ting ; Xiong, Jiawei ; Zhong, Zhaohui ; Chen, Weilan ; Ma, Bingtian ; Qin, Peng ; Wang, Yuping ; Li, Shigui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2995-975bc423e9cd162f2d0515026cd2c78852c0d263b2d322360ecf5a48448c59953</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2025</creationdate><topic>Amylopectin</topic><topic>Amylose</topic><topic>Biosynthesis</topic><topic>Chromosomes</topic><topic>Cloning</topic><topic>Edible Grain - genetics</topic><topic>Edible Grain - metabolism</topic><topic>Gene Expression Regulation, Plant</topic><topic>Genes</topic><topic>Genetic resources</topic><topic>grain chalkiness</topic><topic>Grain storage</topic><topic>LCG1</topic><topic>Molecular modelling</topic><topic>Oryza - genetics</topic><topic>Oryza - growth & development</topic><topic>Oryza - metabolism</topic><topic>OsBP5/OsEBP89 complex</topic><topic>Plant growth</topic><topic>Plant Proteins - genetics</topic><topic>Plant Proteins - metabolism</topic><topic>Proteins</topic><topic>Regulatory sequences</topic><topic>Rice</topic><topic>Signal transduction</topic><topic>Taste</topic><topic>taste quality</topic><topic>Transcription factors</topic><topic>Waxy gene</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tu, Bin</creatorcontrib><creatorcontrib>Zhang, Tao</creatorcontrib><creatorcontrib>Liu, Pin</creatorcontrib><creatorcontrib>Yang, Wen</creatorcontrib><creatorcontrib>Zheng, Ling</creatorcontrib><creatorcontrib>Dai, Ying</creatorcontrib><creatorcontrib>Wang, Hao</creatorcontrib><creatorcontrib>Lin, Song</creatorcontrib><creatorcontrib>Zhang, Zehua</creatorcontrib><creatorcontrib>Zheng, Xiaohang</creatorcontrib><creatorcontrib>Yuan, Mengting</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Zhu, Xiaobo</creatorcontrib><creatorcontrib>Yuan, Hua</creatorcontrib><creatorcontrib>Li, Ting</creatorcontrib><creatorcontrib>Xiong, Jiawei</creatorcontrib><creatorcontrib>Zhong, Zhaohui</creatorcontrib><creatorcontrib>Chen, Weilan</creatorcontrib><creatorcontrib>Ma, Bingtian</creatorcontrib><creatorcontrib>Qin, Peng</creatorcontrib><creatorcontrib>Wang, Yuping</creatorcontrib><creatorcontrib>Li, Shigui</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Engineering Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Engineering Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Engineering Collection</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Plant biotechnology journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tu, Bin</au><au>Zhang, Tao</au><au>Liu, Pin</au><au>Yang, Wen</au><au>Zheng, Ling</au><au>Dai, Ying</au><au>Wang, Hao</au><au>Lin, Song</au><au>Zhang, Zehua</au><au>Zheng, Xiaohang</au><au>Yuan, Mengting</au><au>Chen, Yong</au><au>Zhu, Xiaobo</au><au>Yuan, Hua</au><au>Li, Ting</au><au>Xiong, Jiawei</au><au>Zhong, Zhaohui</au><au>Chen, Weilan</au><au>Ma, Bingtian</au><au>Qin, Peng</au><au>Wang, Yuping</au><au>Li, Shigui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The LCG1‐OsBP5/OsEBP89‐Wx module regulates the grain chalkiness and taste quality in rice</atitle><jtitle>Plant biotechnology journal</jtitle><addtitle>Plant Biotechnol J</addtitle><date>2025-01</date><risdate>2025</risdate><volume>23</volume><issue>1</issue><spage>36</spage><epage>50</epage><pages>36-50</pages><issn>1467-7644</issn><issn>1467-7652</issn><eissn>1467-7652</eissn><abstract>Summary
It is well known that the overall quality of japonica/geng rice is superior to that of indica/xian rice varieties. However, the molecular mechanisms underlying the quality disparities between these two subspecies of rice are still largely unknown. In this study, we have pinpointed a gene homologous to SLR1, termed LCG1, exhibiting significant expression during early caryopsis development and playing a specific role in regulating rice chalkiness and taste by affecting the accumulation of grain storage components, starch granule structure and chain length distribution of amylopectin. LCG1 physically interacts with OsBP5 and indirectly influences the expression of the amylose synthesis gene Waxy (Wx) by hindering the transcriptional activity of the OsBP5/OsEBP89 complex. Notably, sequence variations in the promoter region of LCG1 result in enhanced transcription in japonica rice accessions. This leads to elevated LCG1 expression in CSSL‐LCG1Nip, thereby enhancing rice quality. Our research elucidates the molecular mechanism underlying the impact of the LCG1‐OsBP5/OsEBP89‐Wx regulatory pathway on rice chalkiness and taste quality, offering new genetic resources for improving the indica rice quality.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>39312475</pmid><doi>10.1111/pbi.14475</doi><tpages>15</tpages><orcidid>https://orcid.org/0000-0002-7111-3235</orcidid><orcidid>https://orcid.org/0000-0002-7187-8123</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Amylopectin Amylose Biosynthesis Chromosomes Cloning Edible Grain - genetics Edible Grain - metabolism Gene Expression Regulation, Plant Genes Genetic resources grain chalkiness Grain storage LCG1 Molecular modelling Oryza - genetics Oryza - growth & development Oryza - metabolism OsBP5/OsEBP89 complex Plant growth Plant Proteins - genetics Plant Proteins - metabolism Proteins Regulatory sequences Rice Signal transduction Taste taste quality Transcription factors Waxy gene |
| title | The LCG1‐OsBP5/OsEBP89‐Wx module regulates the grain chalkiness and taste quality in rice |
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