Proteomic characterization of a foraminiferal test's organic matrix
Foraminifera are unicellular protists capable of precipitating calcite tests, which fossilize and preserve geochemical signatures of past environmental conditions dating back to the Cambrian period. The biomineralization mechanisms responsible for the mineral structures, which are key to interpretin...
Gespeichert in:
Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2024-12, Vol.121 (50), p.e2417845121 |
---|---|
Hauptverfasser: | , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 50 |
container_start_page | e2417845121 |
container_title | Proceedings of the National Academy of Sciences - PNAS |
container_volume | 121 |
creator | Prada, Fiorella Haramaty, Liti Livnah, Oded Shaul, Racheli Abramovich, Sigal Mass, Tali Rosenthal, Yair Falkowski, Paul G |
description | Foraminifera are unicellular protists capable of precipitating calcite tests, which fossilize and preserve geochemical signatures of past environmental conditions dating back to the Cambrian period. The biomineralization mechanisms responsible for the mineral structures, which are key to interpreting palaeoceanographic signals, are poorly understood. Here, we present an extensive analysis of the test-bound proteins. Using liquid chromatography-tandem mass spectrometry, we identify 373 test-bound proteins in the large benthic foraminifer
, the majority of which are highly acidic and rich in negatively charged residues. We detect proteins involved in vesicle formation and active Ca
trafficking, but in contrast, do not find similar proteins involved in Mg
transport. Considering findings from this study and previous ones, we propose a dual ion transport model involving seawater vacuolization, followed by the active release of Ca
from the initial vacuoles and subsequent uptake into newly formed Ca-rich vesicles that consequently enrich the calcification fluid. We further speculate that Mg
passively leaks through the membrane from the remaining Mg-rich vesicles, into the calcifying fluid, at much lower concentrations than in seawater. This hypothesis could not only explain the low Mg/Ca ratio in foraminiferal tests compared to inorganic calcite, but could possibly also account for its elevated sensitivity to temperature compared with inorganically precipitated CaCO
. |
doi_str_mv | 10.1073/pnas.2417845121 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11648905</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3145214471</sourcerecordid><originalsourceid>FETCH-LOGICAL-c265t-6a62d8be2d161435f16832e04703f6a7a75ba3909c92395b2cc7548296547a5a3</originalsourceid><addsrcrecordid>eNpdkc1PGzEQxS1UBCFw7q1aqYdy2cTjz_WpqqLyISHBAc7WxPEGo-w6tTcV9K_HEWlaOM1hfu_NPD1CPgOdANV8uu4xT5gA3QgJDA7ICKiBWglDP5ERpUzXjWDimJzk_EQpNbKhR-SYGyUYGDkis7sUBx-74Cr3iAnd4FP4g0OIfRXbCqs2JuxCH1qfcFUNPg_fchXTEvsi6XBI4fmUHLa4yv5sN8fk4eLn_eyqvrm9vJ79uKkdU3KoFSq2aOaeLUCB4LIF1XDmqdCUtwo1ajlHbqhxhnEj58w5LUXDjJJCo0Q-Jt_ffNebeecXzvdD-cmuU-gwvdiIwb7f9OHRLuNvC6BEY6gsDuc7hxR_bUoW24Xs_GqFvY-bbDmIckxJbQr69QP6FDepL_m2lGQghIZCTd8ol2LOybf7b4DabUN225D911BRfPk_xJ7_Wwl_BQDFjCc</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3145214471</pqid></control><display><type>article</type><title>Proteomic characterization of a foraminiferal test's organic matrix</title><source>MEDLINE</source><source>Alma/SFX Local Collection</source><creator>Prada, Fiorella ; Haramaty, Liti ; Livnah, Oded ; Shaul, Racheli ; Abramovich, Sigal ; Mass, Tali ; Rosenthal, Yair ; Falkowski, Paul G</creator><creatorcontrib>Prada, Fiorella ; Haramaty, Liti ; Livnah, Oded ; Shaul, Racheli ; Abramovich, Sigal ; Mass, Tali ; Rosenthal, Yair ; Falkowski, Paul G</creatorcontrib><description>Foraminifera are unicellular protists capable of precipitating calcite tests, which fossilize and preserve geochemical signatures of past environmental conditions dating back to the Cambrian period. The biomineralization mechanisms responsible for the mineral structures, which are key to interpreting palaeoceanographic signals, are poorly understood. Here, we present an extensive analysis of the test-bound proteins. Using liquid chromatography-tandem mass spectrometry, we identify 373 test-bound proteins in the large benthic foraminifer
, the majority of which are highly acidic and rich in negatively charged residues. We detect proteins involved in vesicle formation and active Ca
trafficking, but in contrast, do not find similar proteins involved in Mg
transport. Considering findings from this study and previous ones, we propose a dual ion transport model involving seawater vacuolization, followed by the active release of Ca
from the initial vacuoles and subsequent uptake into newly formed Ca-rich vesicles that consequently enrich the calcification fluid. We further speculate that Mg
passively leaks through the membrane from the remaining Mg-rich vesicles, into the calcifying fluid, at much lower concentrations than in seawater. This hypothesis could not only explain the low Mg/Ca ratio in foraminiferal tests compared to inorganic calcite, but could possibly also account for its elevated sensitivity to temperature compared with inorganically precipitated CaCO
.</description><identifier>ISSN: 0027-8424</identifier><identifier>ISSN: 1091-6490</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.2417845121</identifier><identifier>PMID: 39642195</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Biological Sciences ; Biomineralization - physiology ; Calcification ; Calcite ; Calcium - metabolism ; Calcium carbonate ; Calcium Carbonate - chemistry ; Calcium Carbonate - metabolism ; Calcium influx ; Calcium ions ; Calcium transport ; Cambrian ; Chemical analysis ; Chromatography, Liquid - methods ; Environmental conditions ; Foraminifera - chemistry ; Foraminifera - metabolism ; Fossil foraminifera ; Fossils ; Ion transport ; Liquid chromatography ; Magnesium ; Magnesium - analysis ; Magnesium - metabolism ; Mass spectrometry ; Mass spectroscopy ; Mineralization ; Physical Sciences ; Protein transport ; Proteins ; Proteome - metabolism ; Proteomics ; Proteomics - methods ; Seawater ; Seawater - chemistry ; Tandem Mass Spectrometry - methods ; Vacuoles ; Vesicles ; Water analysis</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2024-12, Vol.121 (50), p.e2417845121</ispartof><rights>Copyright National Academy of Sciences Dec 10, 2024</rights><rights>Copyright © 2024 the Author(s). Published by PNAS. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c265t-6a62d8be2d161435f16832e04703f6a7a75ba3909c92395b2cc7548296547a5a3</cites><orcidid>0000-0002-7298-290X ; 0000-0003-3124-1387 ; 0000-0002-2353-1969</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39642195$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Prada, Fiorella</creatorcontrib><creatorcontrib>Haramaty, Liti</creatorcontrib><creatorcontrib>Livnah, Oded</creatorcontrib><creatorcontrib>Shaul, Racheli</creatorcontrib><creatorcontrib>Abramovich, Sigal</creatorcontrib><creatorcontrib>Mass, Tali</creatorcontrib><creatorcontrib>Rosenthal, Yair</creatorcontrib><creatorcontrib>Falkowski, Paul G</creatorcontrib><title>Proteomic characterization of a foraminiferal test's organic matrix</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Foraminifera are unicellular protists capable of precipitating calcite tests, which fossilize and preserve geochemical signatures of past environmental conditions dating back to the Cambrian period. The biomineralization mechanisms responsible for the mineral structures, which are key to interpreting palaeoceanographic signals, are poorly understood. Here, we present an extensive analysis of the test-bound proteins. Using liquid chromatography-tandem mass spectrometry, we identify 373 test-bound proteins in the large benthic foraminifer
, the majority of which are highly acidic and rich in negatively charged residues. We detect proteins involved in vesicle formation and active Ca
trafficking, but in contrast, do not find similar proteins involved in Mg
transport. Considering findings from this study and previous ones, we propose a dual ion transport model involving seawater vacuolization, followed by the active release of Ca
from the initial vacuoles and subsequent uptake into newly formed Ca-rich vesicles that consequently enrich the calcification fluid. We further speculate that Mg
passively leaks through the membrane from the remaining Mg-rich vesicles, into the calcifying fluid, at much lower concentrations than in seawater. This hypothesis could not only explain the low Mg/Ca ratio in foraminiferal tests compared to inorganic calcite, but could possibly also account for its elevated sensitivity to temperature compared with inorganically precipitated CaCO
.</description><subject>Biological Sciences</subject><subject>Biomineralization - physiology</subject><subject>Calcification</subject><subject>Calcite</subject><subject>Calcium - metabolism</subject><subject>Calcium carbonate</subject><subject>Calcium Carbonate - chemistry</subject><subject>Calcium Carbonate - metabolism</subject><subject>Calcium influx</subject><subject>Calcium ions</subject><subject>Calcium transport</subject><subject>Cambrian</subject><subject>Chemical analysis</subject><subject>Chromatography, Liquid - methods</subject><subject>Environmental conditions</subject><subject>Foraminifera - chemistry</subject><subject>Foraminifera - metabolism</subject><subject>Fossil foraminifera</subject><subject>Fossils</subject><subject>Ion transport</subject><subject>Liquid chromatography</subject><subject>Magnesium</subject><subject>Magnesium - analysis</subject><subject>Magnesium - metabolism</subject><subject>Mass spectrometry</subject><subject>Mass spectroscopy</subject><subject>Mineralization</subject><subject>Physical Sciences</subject><subject>Protein transport</subject><subject>Proteins</subject><subject>Proteome - metabolism</subject><subject>Proteomics</subject><subject>Proteomics - methods</subject><subject>Seawater</subject><subject>Seawater - chemistry</subject><subject>Tandem Mass Spectrometry - methods</subject><subject>Vacuoles</subject><subject>Vesicles</subject><subject>Water analysis</subject><issn>0027-8424</issn><issn>1091-6490</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkc1PGzEQxS1UBCFw7q1aqYdy2cTjz_WpqqLyISHBAc7WxPEGo-w6tTcV9K_HEWlaOM1hfu_NPD1CPgOdANV8uu4xT5gA3QgJDA7ICKiBWglDP5ERpUzXjWDimJzk_EQpNbKhR-SYGyUYGDkis7sUBx-74Cr3iAnd4FP4g0OIfRXbCqs2JuxCH1qfcFUNPg_fchXTEvsi6XBI4fmUHLa4yv5sN8fk4eLn_eyqvrm9vJ79uKkdU3KoFSq2aOaeLUCB4LIF1XDmqdCUtwo1ajlHbqhxhnEj58w5LUXDjJJCo0Q-Jt_ffNebeecXzvdD-cmuU-gwvdiIwb7f9OHRLuNvC6BEY6gsDuc7hxR_bUoW24Xs_GqFvY-bbDmIckxJbQr69QP6FDepL_m2lGQghIZCTd8ol2LOybf7b4DabUN225D911BRfPk_xJ7_Wwl_BQDFjCc</recordid><startdate>20241210</startdate><enddate>20241210</enddate><creator>Prada, Fiorella</creator><creator>Haramaty, Liti</creator><creator>Livnah, Oded</creator><creator>Shaul, Racheli</creator><creator>Abramovich, Sigal</creator><creator>Mass, Tali</creator><creator>Rosenthal, Yair</creator><creator>Falkowski, Paul G</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7298-290X</orcidid><orcidid>https://orcid.org/0000-0003-3124-1387</orcidid><orcidid>https://orcid.org/0000-0002-2353-1969</orcidid></search><sort><creationdate>20241210</creationdate><title>Proteomic characterization of a foraminiferal test's organic matrix</title><author>Prada, Fiorella ; Haramaty, Liti ; Livnah, Oded ; Shaul, Racheli ; Abramovich, Sigal ; Mass, Tali ; Rosenthal, Yair ; Falkowski, Paul G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c265t-6a62d8be2d161435f16832e04703f6a7a75ba3909c92395b2cc7548296547a5a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Biological Sciences</topic><topic>Biomineralization - physiology</topic><topic>Calcification</topic><topic>Calcite</topic><topic>Calcium - metabolism</topic><topic>Calcium carbonate</topic><topic>Calcium Carbonate - chemistry</topic><topic>Calcium Carbonate - metabolism</topic><topic>Calcium influx</topic><topic>Calcium ions</topic><topic>Calcium transport</topic><topic>Cambrian</topic><topic>Chemical analysis</topic><topic>Chromatography, Liquid - methods</topic><topic>Environmental conditions</topic><topic>Foraminifera - chemistry</topic><topic>Foraminifera - metabolism</topic><topic>Fossil foraminifera</topic><topic>Fossils</topic><topic>Ion transport</topic><topic>Liquid chromatography</topic><topic>Magnesium</topic><topic>Magnesium - analysis</topic><topic>Magnesium - metabolism</topic><topic>Mass spectrometry</topic><topic>Mass spectroscopy</topic><topic>Mineralization</topic><topic>Physical Sciences</topic><topic>Protein transport</topic><topic>Proteins</topic><topic>Proteome - metabolism</topic><topic>Proteomics</topic><topic>Proteomics - methods</topic><topic>Seawater</topic><topic>Seawater - chemistry</topic><topic>Tandem Mass Spectrometry - methods</topic><topic>Vacuoles</topic><topic>Vesicles</topic><topic>Water analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Prada, Fiorella</creatorcontrib><creatorcontrib>Haramaty, Liti</creatorcontrib><creatorcontrib>Livnah, Oded</creatorcontrib><creatorcontrib>Shaul, Racheli</creatorcontrib><creatorcontrib>Abramovich, Sigal</creatorcontrib><creatorcontrib>Mass, Tali</creatorcontrib><creatorcontrib>Rosenthal, Yair</creatorcontrib><creatorcontrib>Falkowski, Paul G</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Prada, Fiorella</au><au>Haramaty, Liti</au><au>Livnah, Oded</au><au>Shaul, Racheli</au><au>Abramovich, Sigal</au><au>Mass, Tali</au><au>Rosenthal, Yair</au><au>Falkowski, Paul G</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Proteomic characterization of a foraminiferal test's organic matrix</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2024-12-10</date><risdate>2024</risdate><volume>121</volume><issue>50</issue><spage>e2417845121</spage><pages>e2417845121-</pages><issn>0027-8424</issn><issn>1091-6490</issn><eissn>1091-6490</eissn><abstract>Foraminifera are unicellular protists capable of precipitating calcite tests, which fossilize and preserve geochemical signatures of past environmental conditions dating back to the Cambrian period. The biomineralization mechanisms responsible for the mineral structures, which are key to interpreting palaeoceanographic signals, are poorly understood. Here, we present an extensive analysis of the test-bound proteins. Using liquid chromatography-tandem mass spectrometry, we identify 373 test-bound proteins in the large benthic foraminifer
, the majority of which are highly acidic and rich in negatively charged residues. We detect proteins involved in vesicle formation and active Ca
trafficking, but in contrast, do not find similar proteins involved in Mg
transport. Considering findings from this study and previous ones, we propose a dual ion transport model involving seawater vacuolization, followed by the active release of Ca
from the initial vacuoles and subsequent uptake into newly formed Ca-rich vesicles that consequently enrich the calcification fluid. We further speculate that Mg
passively leaks through the membrane from the remaining Mg-rich vesicles, into the calcifying fluid, at much lower concentrations than in seawater. This hypothesis could not only explain the low Mg/Ca ratio in foraminiferal tests compared to inorganic calcite, but could possibly also account for its elevated sensitivity to temperature compared with inorganically precipitated CaCO
.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>39642195</pmid><doi>10.1073/pnas.2417845121</doi><orcidid>https://orcid.org/0000-0002-7298-290X</orcidid><orcidid>https://orcid.org/0000-0003-3124-1387</orcidid><orcidid>https://orcid.org/0000-0002-2353-1969</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0027-8424 |
ispartof | Proceedings of the National Academy of Sciences - PNAS, 2024-12, Vol.121 (50), p.e2417845121 |
issn | 0027-8424 1091-6490 1091-6490 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11648905 |
source | MEDLINE; Alma/SFX Local Collection |
subjects | Biological Sciences Biomineralization - physiology Calcification Calcite Calcium - metabolism Calcium carbonate Calcium Carbonate - chemistry Calcium Carbonate - metabolism Calcium influx Calcium ions Calcium transport Cambrian Chemical analysis Chromatography, Liquid - methods Environmental conditions Foraminifera - chemistry Foraminifera - metabolism Fossil foraminifera Fossils Ion transport Liquid chromatography Magnesium Magnesium - analysis Magnesium - metabolism Mass spectrometry Mass spectroscopy Mineralization Physical Sciences Protein transport Proteins Proteome - metabolism Proteomics Proteomics - methods Seawater Seawater - chemistry Tandem Mass Spectrometry - methods Vacuoles Vesicles Water analysis |
title | Proteomic characterization of a foraminiferal test's organic matrix |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-08T00%3A32%3A52IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Proteomic%20characterization%20of%20a%20foraminiferal%20test's%20organic%20matrix&rft.jtitle=Proceedings%20of%20the%20National%20Academy%20of%20Sciences%20-%20PNAS&rft.au=Prada,%20Fiorella&rft.date=2024-12-10&rft.volume=121&rft.issue=50&rft.spage=e2417845121&rft.pages=e2417845121-&rft.issn=0027-8424&rft.eissn=1091-6490&rft_id=info:doi/10.1073/pnas.2417845121&rft_dat=%3Cproquest_pubme%3E3145214471%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3145214471&rft_id=info:pmid/39642195&rfr_iscdi=true |