Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma
Pathogenic variants in TBK1, MYOC, and OPTN are associated with primary open-angle glaucoma (POAG) with severe visual field defects. This study aims to understand further POAG-related pathogenic variant(s) based on a cohort of East Asian populations that have not been well-characterized. We conducte...
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Veröffentlicht in: | Genetics in Medicine Open 2024, Vol.2, p.100839, Article 100839 |
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creator | Shiga, Yukihiro Hashimoto, Kazuki Fujita, Kosuke Maekawa, Shigeto Sato, Kota Kubo, Shintaroh Kawase, Kazuhide Tokumo, Kana Kiuchi, Yoshiaki Mori, Sotaro Nakamura, Makoto Iwata, Takeshi Nishiguchi, Koji M. Nakazawa, Toru |
description | Pathogenic variants in TBK1, MYOC, and OPTN are associated with primary open-angle glaucoma (POAG) with severe visual field defects. This study aims to understand further POAG-related pathogenic variant(s) based on a cohort of East Asian populations that have not been well-characterized.
We conducted a comprehensive screening of TBK1, MYOC, and OPTN variants in 174 POAG Japanese patients, followed by 8380 population-specific genome sequencing data references, segregation analysis, and functional protein assays to determine pathogenic variants.
Despite the small sample size, 4 variants were novel, 2 of which p.(Cys5Trp) and p.(Thr293Met) were in the MYOC gene, and 2 p.(Asn51Thr), and p.(Gln142His) were in the OPTN. Notably, the OPTN p.(Asn51Thr) missense variant adjacent to the p.(Glu50Lys) variant, a well-known POAG pathogenic variant, was segregated from all proband’s family members with POAG. Moreover, in silico and in vitro analyses revealed that the OPTN p.(Asn51Thr) protein increased binding instability, interactions of the OPTN-TBK1 complex, and enhanced protein insolubility, likewise the p.(Glu50Lys) protein.
Our findings may provide further genetic insights into rare variants of POAG and support the clear conclusion that OPTN p.(Asn51Thr) is a novel likely pathogenic variant.
[Display omitted] |
doi_str_mv | 10.1016/j.gimo.2023.100839 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11613796</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S2949774423008488</els_id><sourcerecordid>3146665800</sourcerecordid><originalsourceid>FETCH-LOGICAL-c2529-3b818d195df599f450439ecffcc49ef8a558560104d47d8645987610c7432a683</originalsourceid><addsrcrecordid>eNp9kUtr3DAUhUVpaUKSP9BF0TJdeCJZD0ulUIbQRyA0WUy2FYp85dFgS67kGei_r4eZhmSTlS7Suece3Q-hD5QsKKHyarPowpAWNanZfEEU02_Qaa25rpqG87fP6hN0UcqGEFLrmjVMvkcnTEuphVan6PdNC3EKPjg7hRRx8vjufvULj4vLZYmCrtb502e8xDHtoMejndapgxgc3tkcbJxwiHjMYbD5L04jxMrGrgfc9Xbr0mDP0Ttv-wIXx_MMPXz_trr-Wd3e_bi5Xt5Wrha1rtijoqqlWrReaO25IJxpcN47xzV4ZYVQQhJKeMubVkk-Z28kJa7hrLZSsTP09eA7bh8HaN38p2x7c0xmkg3m5UsMa9OlnaFUUtZoOTtcHh1y-rOFMpkhFAd9byOkbTGMcimlUITM0vogdTmVksE_zaHE7OGYjdnDMXs45gBnbvr4POFTy38Us-DLQQDznnYBsikuQHTQhgxuMm0Kr_n_A45cn0A</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3146665800</pqid></control><display><type>article</type><title>Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma</title><source>DOAJ Directory of Open Access Journals</source><creator>Shiga, Yukihiro ; Hashimoto, Kazuki ; Fujita, Kosuke ; Maekawa, Shigeto ; Sato, Kota ; Kubo, Shintaroh ; Kawase, Kazuhide ; Tokumo, Kana ; Kiuchi, Yoshiaki ; Mori, Sotaro ; Nakamura, Makoto ; Iwata, Takeshi ; Nishiguchi, Koji M. ; Nakazawa, Toru</creator><creatorcontrib>Shiga, Yukihiro ; Hashimoto, Kazuki ; Fujita, Kosuke ; Maekawa, Shigeto ; Sato, Kota ; Kubo, Shintaroh ; Kawase, Kazuhide ; Tokumo, Kana ; Kiuchi, Yoshiaki ; Mori, Sotaro ; Nakamura, Makoto ; Iwata, Takeshi ; Nishiguchi, Koji M. ; Nakazawa, Toru ; Japan Glaucoma Society Omics Group (JGS-OG)</creatorcontrib><description>Pathogenic variants in TBK1, MYOC, and OPTN are associated with primary open-angle glaucoma (POAG) with severe visual field defects. This study aims to understand further POAG-related pathogenic variant(s) based on a cohort of East Asian populations that have not been well-characterized.
We conducted a comprehensive screening of TBK1, MYOC, and OPTN variants in 174 POAG Japanese patients, followed by 8380 population-specific genome sequencing data references, segregation analysis, and functional protein assays to determine pathogenic variants.
Despite the small sample size, 4 variants were novel, 2 of which p.(Cys5Trp) and p.(Thr293Met) were in the MYOC gene, and 2 p.(Asn51Thr), and p.(Gln142His) were in the OPTN. Notably, the OPTN p.(Asn51Thr) missense variant adjacent to the p.(Glu50Lys) variant, a well-known POAG pathogenic variant, was segregated from all proband’s family members with POAG. Moreover, in silico and in vitro analyses revealed that the OPTN p.(Asn51Thr) protein increased binding instability, interactions of the OPTN-TBK1 complex, and enhanced protein insolubility, likewise the p.(Glu50Lys) protein.
Our findings may provide further genetic insights into rare variants of POAG and support the clear conclusion that OPTN p.(Asn51Thr) is a novel likely pathogenic variant.
[Display omitted]</description><identifier>ISSN: 2949-7744</identifier><identifier>EISSN: 2949-7744</identifier><identifier>DOI: 10.1016/j.gimo.2023.100839</identifier><identifier>PMID: 39669598</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Genetics ; Glaucoma ; Myocilin (MYOC) ; Optineurin (OPTN) ; TANK Binding Kinase 1 (TBK1)</subject><ispartof>Genetics in Medicine Open, 2024, Vol.2, p.100839, Article 100839</ispartof><rights>2023 The Authors</rights><rights>2023 The Authors.</rights><rights>2023 The Authors 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c2529-3b818d195df599f450439ecffcc49ef8a558560104d47d8645987610c7432a683</cites><orcidid>0000-0001-5531-7409</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,864,885,4023,27922,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39669598$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shiga, Yukihiro</creatorcontrib><creatorcontrib>Hashimoto, Kazuki</creatorcontrib><creatorcontrib>Fujita, Kosuke</creatorcontrib><creatorcontrib>Maekawa, Shigeto</creatorcontrib><creatorcontrib>Sato, Kota</creatorcontrib><creatorcontrib>Kubo, Shintaroh</creatorcontrib><creatorcontrib>Kawase, Kazuhide</creatorcontrib><creatorcontrib>Tokumo, Kana</creatorcontrib><creatorcontrib>Kiuchi, Yoshiaki</creatorcontrib><creatorcontrib>Mori, Sotaro</creatorcontrib><creatorcontrib>Nakamura, Makoto</creatorcontrib><creatorcontrib>Iwata, Takeshi</creatorcontrib><creatorcontrib>Nishiguchi, Koji M.</creatorcontrib><creatorcontrib>Nakazawa, Toru</creatorcontrib><creatorcontrib>Japan Glaucoma Society Omics Group (JGS-OG)</creatorcontrib><title>Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma</title><title>Genetics in Medicine Open</title><addtitle>Genet Med Open</addtitle><description>Pathogenic variants in TBK1, MYOC, and OPTN are associated with primary open-angle glaucoma (POAG) with severe visual field defects. This study aims to understand further POAG-related pathogenic variant(s) based on a cohort of East Asian populations that have not been well-characterized.
We conducted a comprehensive screening of TBK1, MYOC, and OPTN variants in 174 POAG Japanese patients, followed by 8380 population-specific genome sequencing data references, segregation analysis, and functional protein assays to determine pathogenic variants.
Despite the small sample size, 4 variants were novel, 2 of which p.(Cys5Trp) and p.(Thr293Met) were in the MYOC gene, and 2 p.(Asn51Thr), and p.(Gln142His) were in the OPTN. Notably, the OPTN p.(Asn51Thr) missense variant adjacent to the p.(Glu50Lys) variant, a well-known POAG pathogenic variant, was segregated from all proband’s family members with POAG. Moreover, in silico and in vitro analyses revealed that the OPTN p.(Asn51Thr) protein increased binding instability, interactions of the OPTN-TBK1 complex, and enhanced protein insolubility, likewise the p.(Glu50Lys) protein.
Our findings may provide further genetic insights into rare variants of POAG and support the clear conclusion that OPTN p.(Asn51Thr) is a novel likely pathogenic variant.
[Display omitted]</description><subject>Genetics</subject><subject>Glaucoma</subject><subject>Myocilin (MYOC)</subject><subject>Optineurin (OPTN)</subject><subject>TANK Binding Kinase 1 (TBK1)</subject><issn>2949-7744</issn><issn>2949-7744</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kUtr3DAUhUVpaUKSP9BF0TJdeCJZD0ulUIbQRyA0WUy2FYp85dFgS67kGei_r4eZhmSTlS7Suece3Q-hD5QsKKHyarPowpAWNanZfEEU02_Qaa25rpqG87fP6hN0UcqGEFLrmjVMvkcnTEuphVan6PdNC3EKPjg7hRRx8vjufvULj4vLZYmCrtb502e8xDHtoMejndapgxgc3tkcbJxwiHjMYbD5L04jxMrGrgfc9Xbr0mDP0Ttv-wIXx_MMPXz_trr-Wd3e_bi5Xt5Wrha1rtijoqqlWrReaO25IJxpcN47xzV4ZYVQQhJKeMubVkk-Z28kJa7hrLZSsTP09eA7bh8HaN38p2x7c0xmkg3m5UsMa9OlnaFUUtZoOTtcHh1y-rOFMpkhFAd9byOkbTGMcimlUITM0vogdTmVksE_zaHE7OGYjdnDMXs45gBnbvr4POFTy38Us-DLQQDznnYBsikuQHTQhgxuMm0Kr_n_A45cn0A</recordid><startdate>2024</startdate><enddate>2024</enddate><creator>Shiga, Yukihiro</creator><creator>Hashimoto, Kazuki</creator><creator>Fujita, Kosuke</creator><creator>Maekawa, Shigeto</creator><creator>Sato, Kota</creator><creator>Kubo, Shintaroh</creator><creator>Kawase, Kazuhide</creator><creator>Tokumo, Kana</creator><creator>Kiuchi, Yoshiaki</creator><creator>Mori, Sotaro</creator><creator>Nakamura, Makoto</creator><creator>Iwata, Takeshi</creator><creator>Nishiguchi, Koji M.</creator><creator>Nakazawa, Toru</creator><general>Elsevier Inc</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-5531-7409</orcidid></search><sort><creationdate>2024</creationdate><title>Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma</title><author>Shiga, Yukihiro ; Hashimoto, Kazuki ; Fujita, Kosuke ; Maekawa, Shigeto ; Sato, Kota ; Kubo, Shintaroh ; Kawase, Kazuhide ; Tokumo, Kana ; Kiuchi, Yoshiaki ; Mori, Sotaro ; Nakamura, Makoto ; Iwata, Takeshi ; Nishiguchi, Koji M. ; Nakazawa, Toru</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c2529-3b818d195df599f450439ecffcc49ef8a558560104d47d8645987610c7432a683</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Genetics</topic><topic>Glaucoma</topic><topic>Myocilin (MYOC)</topic><topic>Optineurin (OPTN)</topic><topic>TANK Binding Kinase 1 (TBK1)</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shiga, Yukihiro</creatorcontrib><creatorcontrib>Hashimoto, Kazuki</creatorcontrib><creatorcontrib>Fujita, Kosuke</creatorcontrib><creatorcontrib>Maekawa, Shigeto</creatorcontrib><creatorcontrib>Sato, Kota</creatorcontrib><creatorcontrib>Kubo, Shintaroh</creatorcontrib><creatorcontrib>Kawase, Kazuhide</creatorcontrib><creatorcontrib>Tokumo, Kana</creatorcontrib><creatorcontrib>Kiuchi, Yoshiaki</creatorcontrib><creatorcontrib>Mori, Sotaro</creatorcontrib><creatorcontrib>Nakamura, Makoto</creatorcontrib><creatorcontrib>Iwata, Takeshi</creatorcontrib><creatorcontrib>Nishiguchi, Koji M.</creatorcontrib><creatorcontrib>Nakazawa, Toru</creatorcontrib><creatorcontrib>Japan Glaucoma Society Omics Group (JGS-OG)</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genetics in Medicine Open</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shiga, Yukihiro</au><au>Hashimoto, Kazuki</au><au>Fujita, Kosuke</au><au>Maekawa, Shigeto</au><au>Sato, Kota</au><au>Kubo, Shintaroh</au><au>Kawase, Kazuhide</au><au>Tokumo, Kana</au><au>Kiuchi, Yoshiaki</au><au>Mori, Sotaro</au><au>Nakamura, Makoto</au><au>Iwata, Takeshi</au><au>Nishiguchi, Koji M.</au><au>Nakazawa, Toru</au><aucorp>Japan Glaucoma Society Omics Group (JGS-OG)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma</atitle><jtitle>Genetics in Medicine Open</jtitle><addtitle>Genet Med Open</addtitle><date>2024</date><risdate>2024</risdate><volume>2</volume><spage>100839</spage><pages>100839-</pages><artnum>100839</artnum><issn>2949-7744</issn><eissn>2949-7744</eissn><abstract>Pathogenic variants in TBK1, MYOC, and OPTN are associated with primary open-angle glaucoma (POAG) with severe visual field defects. This study aims to understand further POAG-related pathogenic variant(s) based on a cohort of East Asian populations that have not been well-characterized.
We conducted a comprehensive screening of TBK1, MYOC, and OPTN variants in 174 POAG Japanese patients, followed by 8380 population-specific genome sequencing data references, segregation analysis, and functional protein assays to determine pathogenic variants.
Despite the small sample size, 4 variants were novel, 2 of which p.(Cys5Trp) and p.(Thr293Met) were in the MYOC gene, and 2 p.(Asn51Thr), and p.(Gln142His) were in the OPTN. Notably, the OPTN p.(Asn51Thr) missense variant adjacent to the p.(Glu50Lys) variant, a well-known POAG pathogenic variant, was segregated from all proband’s family members with POAG. Moreover, in silico and in vitro analyses revealed that the OPTN p.(Asn51Thr) protein increased binding instability, interactions of the OPTN-TBK1 complex, and enhanced protein insolubility, likewise the p.(Glu50Lys) protein.
Our findings may provide further genetic insights into rare variants of POAG and support the clear conclusion that OPTN p.(Asn51Thr) is a novel likely pathogenic variant.
[Display omitted]</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>39669598</pmid><doi>10.1016/j.gimo.2023.100839</doi><orcidid>https://orcid.org/0000-0001-5531-7409</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Genetics Glaucoma Myocilin (MYOC) Optineurin (OPTN) TANK Binding Kinase 1 (TBK1) |
title | Identification of OPTN p.(Asn51Thr): A novel pathogenic variant in primary open-angle glaucoma |
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