PatchDock and SymmDock: servers for rigid and symmetric docking
Here, we describe two freely available web servers for molecular docking. The PatchDock method performs structure prediction of protein–protein and protein–small molecule complexes. The SymmDock method predicts the structure of a homomultimer with cyclic symmetry given the structure of the monomeric...
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| Veröffentlicht in: | Nucleic acids research 2005-07, Vol.33 (suppl-2), p.W363-W367 |
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| container_issue | suppl-2 |
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| container_title | Nucleic acids research |
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| creator | Schneidman-Duhovny, Dina Inbar, Yuval Nussinov, Ruth Wolfson, Haim J. |
| description | Here, we describe two freely available web servers for molecular docking. The PatchDock method performs structure prediction of protein–protein and protein–small molecule complexes. The SymmDock method predicts the structure of a homomultimer with cyclic symmetry given the structure of the monomeric unit. The inputs to the servers are either protein PDB codes or uploaded protein structures. The services are available at http://bioinfo3d.cs.tau.ac.il. The methods behind the servers are very efficient, allowing large-scale docking experiments. |
| doi_str_mv | 10.1093/nar/gki481 |
| format | Article |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Algorithms Internet Ligands Multiprotein Complexes - chemistry Protein Conformation Software User-Computer Interface |
| title | PatchDock and SymmDock: servers for rigid and symmetric docking |
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