TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis
We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulat...
Gespeichert in:
| Veröffentlicht in: | Nucleic acids research 2005-07, Vol.33 (suppl-2), p.W393-W396 |
|---|---|
| Hauptverfasser: | , , , , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | W396 |
|---|---|
| container_issue | suppl-2 |
| container_start_page | W393 |
| container_title | Nucleic acids research |
| container_volume | 33 |
| creator | Aerts, Stein Van Loo, Peter Thijs, Gert Mayer, Herbert de Martin, Rainer Moreau, Yves De Moor, Bart |
| description | We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php. |
| doi_str_mv | 10.1093/nar/gki354 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1160115</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>20440482</sourcerecordid><originalsourceid>FETCH-LOGICAL-c569t-72d3d07f0289cbe9d7cf2a2327cf625b03f35fab701ee0afd9ff6fb73ae3590b3</originalsourceid><addsrcrecordid>eNqFkUuLFDEUhYMoTju68QdI4cKFUM7Nu-JCGNpHC40DMgPiJqSqku5MpyttUjXa_94M3YyPzawu3PvdA-cchJ5jeINB0bPBpLPVxlPOHqAZpoLUTAnyEM2AAq8xsOYEPcn5GgAzzNljdIK5aoApOUNfLy-u5udfKvK2Gte2MiHUfujClP2NreLODlWOU-ps9TOmTWuHbl25mKpkV1MwY0z7KtsfU9mX38GEffb5KXrkTMj22XGeoquPHy7ni3p58enz_HxZd1yosZakpz1IB6RRXWtVLztHDKGkTEF4C9RR7kwrAVsLxvXKOeFaSY2lXEFLT9G7g-5uare27-wwJhP0LvmtSXsdjdf_Xga_1qt4ozEWgDEvAq-OAikWD3nUW587G4IZbJyyFlJJJhp8L0iAsZIyuRfEkjcNUFXAl_-B1yXmEuCtGAjZcJAFen2AuhRzTtbdecOgb5vXpXl9aL7AL_5O4w96rLoA9QHwebS_7u4mbYpRKrlefPuu2fL9opFCakJ_A-34ujs</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>200678507</pqid></control><display><type>article</type><title>TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis</title><source>Oxford Journals Open Access Collection</source><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Aerts, Stein ; Van Loo, Peter ; Thijs, Gert ; Mayer, Herbert ; de Martin, Rainer ; Moreau, Yves ; De Moor, Bart</creator><creatorcontrib>Aerts, Stein ; Van Loo, Peter ; Thijs, Gert ; Mayer, Herbert ; de Martin, Rainer ; Moreau, Yves ; De Moor, Bart</creatorcontrib><description>We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php.</description><identifier>ISSN: 0305-1048</identifier><identifier>EISSN: 1362-4962</identifier><identifier>DOI: 10.1093/nar/gki354</identifier><identifier>PMID: 15980497</identifier><identifier>CODEN: NARHAD</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Algorithms ; Gene Expression Regulation ; Genomics ; Internet ; Regulatory Sequences, Nucleic Acid ; Sequence Analysis, DNA - methods ; Software ; User-Computer Interface</subject><ispartof>Nucleic acids research, 2005-07, Vol.33 (suppl-2), p.W393-W396</ispartof><rights>Copyright Oxford University Press(England) Jul 1, 2005</rights><rights>The Author 2005. Published by Oxford University Press. All rights reserved 2005</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c569t-72d3d07f0289cbe9d7cf2a2327cf625b03f35fab701ee0afd9ff6fb73ae3590b3</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160115/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160115/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/15980497$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Aerts, Stein</creatorcontrib><creatorcontrib>Van Loo, Peter</creatorcontrib><creatorcontrib>Thijs, Gert</creatorcontrib><creatorcontrib>Mayer, Herbert</creatorcontrib><creatorcontrib>de Martin, Rainer</creatorcontrib><creatorcontrib>Moreau, Yves</creatorcontrib><creatorcontrib>De Moor, Bart</creatorcontrib><title>TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis</title><title>Nucleic acids research</title><addtitle>Nucl. Acids Res</addtitle><description>We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php.</description><subject>Algorithms</subject><subject>Gene Expression Regulation</subject><subject>Genomics</subject><subject>Internet</subject><subject>Regulatory Sequences, Nucleic Acid</subject><subject>Sequence Analysis, DNA - methods</subject><subject>Software</subject><subject>User-Computer Interface</subject><issn>0305-1048</issn><issn>1362-4962</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUuLFDEUhYMoTju68QdI4cKFUM7Nu-JCGNpHC40DMgPiJqSqku5MpyttUjXa_94M3YyPzawu3PvdA-cchJ5jeINB0bPBpLPVxlPOHqAZpoLUTAnyEM2AAq8xsOYEPcn5GgAzzNljdIK5aoApOUNfLy-u5udfKvK2Gte2MiHUfujClP2NreLODlWOU-ps9TOmTWuHbl25mKpkV1MwY0z7KtsfU9mX38GEffb5KXrkTMj22XGeoquPHy7ni3p58enz_HxZd1yosZakpz1IB6RRXWtVLztHDKGkTEF4C9RR7kwrAVsLxvXKOeFaSY2lXEFLT9G7g-5uare27-wwJhP0LvmtSXsdjdf_Xga_1qt4ozEWgDEvAq-OAikWD3nUW587G4IZbJyyFlJJJhp8L0iAsZIyuRfEkjcNUFXAl_-B1yXmEuCtGAjZcJAFen2AuhRzTtbdecOgb5vXpXl9aL7AL_5O4w96rLoA9QHwebS_7u4mbYpRKrlefPuu2fL9opFCakJ_A-34ujs</recordid><startdate>20050701</startdate><enddate>20050701</enddate><creator>Aerts, Stein</creator><creator>Van Loo, Peter</creator><creator>Thijs, Gert</creator><creator>Mayer, Herbert</creator><creator>de Martin, Rainer</creator><creator>Moreau, Yves</creator><creator>De Moor, Bart</creator><general>Oxford University Press</general><general>Oxford Publishing Limited (England)</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7QO</scope><scope>7QP</scope><scope>7QR</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20050701</creationdate><title>TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis</title><author>Aerts, Stein ; Van Loo, Peter ; Thijs, Gert ; Mayer, Herbert ; de Martin, Rainer ; Moreau, Yves ; De Moor, Bart</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c569t-72d3d07f0289cbe9d7cf2a2327cf625b03f35fab701ee0afd9ff6fb73ae3590b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>Algorithms</topic><topic>Gene Expression Regulation</topic><topic>Genomics</topic><topic>Internet</topic><topic>Regulatory Sequences, Nucleic Acid</topic><topic>Sequence Analysis, DNA - methods</topic><topic>Software</topic><topic>User-Computer Interface</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Aerts, Stein</creatorcontrib><creatorcontrib>Van Loo, Peter</creatorcontrib><creatorcontrib>Thijs, Gert</creatorcontrib><creatorcontrib>Mayer, Herbert</creatorcontrib><creatorcontrib>de Martin, Rainer</creatorcontrib><creatorcontrib>Moreau, Yves</creatorcontrib><creatorcontrib>De Moor, Bart</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Nucleic acids research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Aerts, Stein</au><au>Van Loo, Peter</au><au>Thijs, Gert</au><au>Mayer, Herbert</au><au>de Martin, Rainer</au><au>Moreau, Yves</au><au>De Moor, Bart</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis</atitle><jtitle>Nucleic acids research</jtitle><addtitle>Nucl. Acids Res</addtitle><date>2005-07-01</date><risdate>2005</risdate><volume>33</volume><issue>suppl-2</issue><spage>W393</spage><epage>W396</epage><pages>W393-W396</pages><issn>0305-1048</issn><eissn>1362-4962</eissn><coden>NARHAD</coden><abstract>We present the second and improved release of the TOUCAN workbench for cis-regulatory sequence analysis. TOUCAN implements and integrates fast state-of-the-art methods and strategies in gene regulation bioinformatics, including algorithms for comparative genomics and for the detection of cis-regulatory modules. This second release of TOUCAN has become open source and thereby carries the potential to evolve rapidly. The main goal of TOUCAN is to allow a user to come to testable hypotheses regarding the regulation of a gene or of a set of co-regulated genes. TOUCAN can be launched from this location: http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>15980497</pmid><doi>10.1093/nar/gki354</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 2005-07, Vol.33 (suppl-2), p.W393-W396 |
| issn | 0305-1048 1362-4962 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_1160115 |
| source | Oxford Journals Open Access Collection; MEDLINE; DOAJ Directory of Open Access Journals; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Algorithms Gene Expression Regulation Genomics Internet Regulatory Sequences, Nucleic Acid Sequence Analysis, DNA - methods Software User-Computer Interface |
| title | TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-31T21%3A23%3A57IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=TOUCAN%202:%20the%20all-inclusive%20open%20source%20workbench%20for%20regulatory%20sequence%20analysis&rft.jtitle=Nucleic%20acids%20research&rft.au=Aerts,%20Stein&rft.date=2005-07-01&rft.volume=33&rft.issue=suppl-2&rft.spage=W393&rft.epage=W396&rft.pages=W393-W396&rft.issn=0305-1048&rft.eissn=1362-4962&rft.coden=NARHAD&rft_id=info:doi/10.1093/nar/gki354&rft_dat=%3Cproquest_pubme%3E20440482%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=200678507&rft_id=info:pmid/15980497&rfr_iscdi=true |