Fragment Finder: a web-based software to identify similar three-dimensional structural motif
FF (Fragment Finder) is a web-based interactive search engine developed to retrieve the user-desired similar 3D structural fragments from the selected subset of 25 or 90% non-homologous protein chains. The search is based on the comparison of the main chain backbone conformational angles (φ and ϕ)....
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| Veröffentlicht in: | Nucleic acids research 2005-07, Vol.33 (suppl-2), p.W85-W88 |
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| container_end_page | W88 |
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| container_issue | suppl-2 |
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| container_title | Nucleic acids research |
| container_volume | 33 |
| creator | Ananthalakshmi, P. Kumar, Ch. Kiran Jeyasimhan, M. Sumathi, K. Sekar, K. |
| description | FF (Fragment Finder) is a web-based interactive search engine developed to retrieve the user-desired similar 3D structural fragments from the selected subset of 25 or 90% non-homologous protein chains. The search is based on the comparison of the main chain backbone conformational angles (φ and ϕ). Additionally, the queried motifs can be superimposed to find out how similar the structural fragments are, so that the information can be effectively used in molecular modeling. The engine has facilities to view the resultant superposed or individual 3D structure(s) on the client machine. The proposed web server is made freely accessible at the following URL: http://cluster.physics.iisc.ernet.in/ff/ or http://144.16.71.148/ff/. |
| doi_str_mv | 10.1093/nar/gki353 |
| format | Article |
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| fulltext | fulltext |
| identifier | ISSN: 0305-1048 |
| ispartof | Nucleic acids research, 2005-07, Vol.33 (suppl-2), p.W85-W88 |
| issn | 0305-1048 1362-4962 |
| language | eng |
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| source | MEDLINE; DOAJ Directory of Open Access Journals; Oxford Journals Open Access Collection; PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Amino Acid Motifs Internet Molecular Structure Proteins - chemistry Software |
| title | Fragment Finder: a web-based software to identify similar three-dimensional structural motif |
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