An Analysis of Genetic Polymorphisms in 76 Genes Related to the Development of Ovarian Tumors of Different Aggressiveness
Borderline ovarian tumors (BOTS) are rare neoplasms of intermediate aggressiveness between cystadenomas and low-grade ovarian cancers (lgOvCa), which they share some molecular resemblances with. In contrast to the most frequent and well-described high-grade ovarian carcinomas (hgOvCa), the molecular...
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description | Borderline ovarian tumors (BOTS) are rare neoplasms of intermediate aggressiveness between cystadenomas and low-grade ovarian cancers (lgOvCa), which they share some molecular resemblances with. In contrast to the most frequent and well-described high-grade ovarian carcinomas (hgOvCa), the molecular background of BOTS and lgOvCa is less thoroughly characterized. Here, we aimed to analyze genetic variants in crucial tumor suppressors and oncogenes in BOTS (with or without the
V600E mutation), lgOvCa, and hgOvCa in two gene panels using next-generation sequencing. Then, we verified the existence of selected polymorphisms by Sanger sequencing. Finally, Western blot analyses were carried out to check the impact of the selected polymorphisms on the expression of the corresponding proteins. Our study contributes to the molecular characterization of ovarian neoplasms, demonstrating divergent polymorphic patterns pointing to distinct signaling pathways engaged in their development. Certain mutations seem to play an important role in BOTS without the
V600E variant (
) and in lgOvCa (
and
), but not in hgOvCa. Additionally, based on multivariable regression analyses, potential biomarkers in BOTS (
) and hgOvCa (
,
,
,
) were identified. Noteworthy, for some of the analyzed genes, such as
,
, and
,
,
, the status of BRCA1/2 and TP53, respectively, turned out to be crucial. Our results shed new light on the similarities and differences in the polymorphic patterns between ovarian tumors of diverse aggressiveness. Furthermore, the biomarkers identified herein are of potential use as predictors of the prognosis and/or response to therapy. |
doi_str_mv | 10.3390/ijms252010876 |
format | Article |
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V600E mutation), lgOvCa, and hgOvCa in two gene panels using next-generation sequencing. Then, we verified the existence of selected polymorphisms by Sanger sequencing. Finally, Western blot analyses were carried out to check the impact of the selected polymorphisms on the expression of the corresponding proteins. Our study contributes to the molecular characterization of ovarian neoplasms, demonstrating divergent polymorphic patterns pointing to distinct signaling pathways engaged in their development. Certain mutations seem to play an important role in BOTS without the
V600E variant (
) and in lgOvCa (
and
), but not in hgOvCa. Additionally, based on multivariable regression analyses, potential biomarkers in BOTS (
) and hgOvCa (
,
,
,
) were identified. Noteworthy, for some of the analyzed genes, such as
,
, and
,
,
, the status of BRCA1/2 and TP53, respectively, turned out to be crucial. Our results shed new light on the similarities and differences in the polymorphic patterns between ovarian tumors of diverse aggressiveness. Furthermore, the biomarkers identified herein are of potential use as predictors of the prognosis and/or response to therapy.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms252010876</identifier><identifier>PMID: 39456660</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Adult ; Aged ; Biomarkers, Tumor - genetics ; Development and progression ; Female ; Genes ; Genetic aspects ; Genetic polymorphisms ; Health aspects ; Humans ; Middle Aged ; Mutation ; Ovarian cancer ; Ovarian Neoplasms - genetics ; Ovarian Neoplasms - pathology ; Ovarian tumors ; Physiological aspects ; Polymorphism, Genetic ; Proteins ; Proto-Oncogene Proteins B-raf - genetics ; Tumors</subject><ispartof>International journal of molecular sciences, 2024-10, Vol.25 (20), p.10876</ispartof><rights>COPYRIGHT 2024 MDPI AG</rights><rights>2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 by the authors. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c369t-546755f5a9a5c0d7a7494a29418ca3935489477127c1aaaa64153619523101ac3</cites><orcidid>0000-0003-1670-0274 ; 0000-0002-7542-3898</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11507582/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11507582/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39456660$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Szafron, Laura A</creatorcontrib><creatorcontrib>Sobiczewski, Piotr</creatorcontrib><creatorcontrib>Dansonka-Mieszkowska, Agnieszka</creatorcontrib><creatorcontrib>Kupryjanczyk, Jolanta</creatorcontrib><creatorcontrib>Szafron, Lukasz M</creatorcontrib><title>An Analysis of Genetic Polymorphisms in 76 Genes Related to the Development of Ovarian Tumors of Different Aggressiveness</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>Borderline ovarian tumors (BOTS) are rare neoplasms of intermediate aggressiveness between cystadenomas and low-grade ovarian cancers (lgOvCa), which they share some molecular resemblances with. In contrast to the most frequent and well-described high-grade ovarian carcinomas (hgOvCa), the molecular background of BOTS and lgOvCa is less thoroughly characterized. Here, we aimed to analyze genetic variants in crucial tumor suppressors and oncogenes in BOTS (with or without the
V600E mutation), lgOvCa, and hgOvCa in two gene panels using next-generation sequencing. Then, we verified the existence of selected polymorphisms by Sanger sequencing. Finally, Western blot analyses were carried out to check the impact of the selected polymorphisms on the expression of the corresponding proteins. Our study contributes to the molecular characterization of ovarian neoplasms, demonstrating divergent polymorphic patterns pointing to distinct signaling pathways engaged in their development. Certain mutations seem to play an important role in BOTS without the
V600E variant (
) and in lgOvCa (
and
), but not in hgOvCa. Additionally, based on multivariable regression analyses, potential biomarkers in BOTS (
) and hgOvCa (
,
,
,
) were identified. Noteworthy, for some of the analyzed genes, such as
,
, and
,
,
, the status of BRCA1/2 and TP53, respectively, turned out to be crucial. Our results shed new light on the similarities and differences in the polymorphic patterns between ovarian tumors of diverse aggressiveness. Furthermore, the biomarkers identified herein are of potential use as predictors of the prognosis and/or response to therapy.</description><subject>Adult</subject><subject>Aged</subject><subject>Biomarkers, Tumor - genetics</subject><subject>Development and progression</subject><subject>Female</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic polymorphisms</subject><subject>Health aspects</subject><subject>Humans</subject><subject>Middle Aged</subject><subject>Mutation</subject><subject>Ovarian cancer</subject><subject>Ovarian Neoplasms - genetics</subject><subject>Ovarian Neoplasms - pathology</subject><subject>Ovarian tumors</subject><subject>Physiological aspects</subject><subject>Polymorphism, Genetic</subject><subject>Proteins</subject><subject>Proto-Oncogene Proteins B-raf - genetics</subject><subject>Tumors</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNptks1rFDEYxgdRbK0evUrAi5ep-c7kJEO_FAoVqecQs-_sZplJ1mRmYf97M9u6dEuTQ0Ke3_MkeXmr6iPB54xp_NWvh0wFxQQ3Sr6qTgmntMZYqtdP9ifVu5zXGFNGhX5bnTDNhZQSn1a7NqA22H6XfUaxQzcQYPQO_Yz9bohps_J5yMgHpORey-gX9HaEBRojGleALmELfdwMEMbZf7e1yduA7qfi3ide-q6DNMvtcpkgZ7-dc_L76k1n-wwfHtez6vf11f3F9_r27ubHRXtbOyb1WAsulRCdsNoKhxfKKq65pZqTxlmmmeCN5koRqhyxZUhOBJNEC8oIJtaxs-rbQ-5m-jPAwpWXJNubTfKDTTsTrTfHSvArs4xbQ4jASjS0JHx5TEjx7wR5NIPPDvreBohTNoxQgiUWDSvo52foOk6p1HdPYcklKdiBWtoejA9dLBe7OdS0DeFMUyHnrPMXqDIXMHgXA3S-nB8Z6geDSzHnBN3hkwSbuVnMUbMU_tPTyhzo_93B_gFNObis</recordid><startdate>20241010</startdate><enddate>20241010</enddate><creator>Szafron, Laura A</creator><creator>Sobiczewski, Piotr</creator><creator>Dansonka-Mieszkowska, Agnieszka</creator><creator>Kupryjanczyk, Jolanta</creator><creator>Szafron, Lukasz M</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-1670-0274</orcidid><orcidid>https://orcid.org/0000-0002-7542-3898</orcidid></search><sort><creationdate>20241010</creationdate><title>An Analysis of Genetic Polymorphisms in 76 Genes Related to the Development of Ovarian Tumors of Different Aggressiveness</title><author>Szafron, Laura A ; Sobiczewski, Piotr ; Dansonka-Mieszkowska, Agnieszka ; Kupryjanczyk, Jolanta ; Szafron, Lukasz M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c369t-546755f5a9a5c0d7a7494a29418ca3935489477127c1aaaa64153619523101ac3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Biomarkers, Tumor - genetics</topic><topic>Development and progression</topic><topic>Female</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genetic polymorphisms</topic><topic>Health aspects</topic><topic>Humans</topic><topic>Middle Aged</topic><topic>Mutation</topic><topic>Ovarian cancer</topic><topic>Ovarian Neoplasms - genetics</topic><topic>Ovarian Neoplasms - pathology</topic><topic>Ovarian tumors</topic><topic>Physiological aspects</topic><topic>Polymorphism, Genetic</topic><topic>Proteins</topic><topic>Proto-Oncogene Proteins B-raf - genetics</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Szafron, Laura A</creatorcontrib><creatorcontrib>Sobiczewski, Piotr</creatorcontrib><creatorcontrib>Dansonka-Mieszkowska, Agnieszka</creatorcontrib><creatorcontrib>Kupryjanczyk, Jolanta</creatorcontrib><creatorcontrib>Szafron, Lukasz M</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Szafron, Laura A</au><au>Sobiczewski, Piotr</au><au>Dansonka-Mieszkowska, Agnieszka</au><au>Kupryjanczyk, Jolanta</au><au>Szafron, Lukasz M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An Analysis of Genetic Polymorphisms in 76 Genes Related to the Development of Ovarian Tumors of Different Aggressiveness</atitle><jtitle>International journal of molecular sciences</jtitle><addtitle>Int J Mol Sci</addtitle><date>2024-10-10</date><risdate>2024</risdate><volume>25</volume><issue>20</issue><spage>10876</spage><pages>10876-</pages><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>Borderline ovarian tumors (BOTS) are rare neoplasms of intermediate aggressiveness between cystadenomas and low-grade ovarian cancers (lgOvCa), which they share some molecular resemblances with. In contrast to the most frequent and well-described high-grade ovarian carcinomas (hgOvCa), the molecular background of BOTS and lgOvCa is less thoroughly characterized. Here, we aimed to analyze genetic variants in crucial tumor suppressors and oncogenes in BOTS (with or without the
V600E mutation), lgOvCa, and hgOvCa in two gene panels using next-generation sequencing. Then, we verified the existence of selected polymorphisms by Sanger sequencing. Finally, Western blot analyses were carried out to check the impact of the selected polymorphisms on the expression of the corresponding proteins. Our study contributes to the molecular characterization of ovarian neoplasms, demonstrating divergent polymorphic patterns pointing to distinct signaling pathways engaged in their development. Certain mutations seem to play an important role in BOTS without the
V600E variant (
) and in lgOvCa (
and
), but not in hgOvCa. Additionally, based on multivariable regression analyses, potential biomarkers in BOTS (
) and hgOvCa (
,
,
,
) were identified. Noteworthy, for some of the analyzed genes, such as
,
, and
,
,
, the status of BRCA1/2 and TP53, respectively, turned out to be crucial. Our results shed new light on the similarities and differences in the polymorphic patterns between ovarian tumors of diverse aggressiveness. Furthermore, the biomarkers identified herein are of potential use as predictors of the prognosis and/or response to therapy.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>39456660</pmid><doi>10.3390/ijms252010876</doi><orcidid>https://orcid.org/0000-0003-1670-0274</orcidid><orcidid>https://orcid.org/0000-0002-7542-3898</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adult Aged Biomarkers, Tumor - genetics Development and progression Female Genes Genetic aspects Genetic polymorphisms Health aspects Humans Middle Aged Mutation Ovarian cancer Ovarian Neoplasms - genetics Ovarian Neoplasms - pathology Ovarian tumors Physiological aspects Polymorphism, Genetic Proteins Proto-Oncogene Proteins B-raf - genetics Tumors |
title | An Analysis of Genetic Polymorphisms in 76 Genes Related to the Development of Ovarian Tumors of Different Aggressiveness |
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