Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases
Pyridoxal 5′-phosphate (PLP)-dependent enzymes are the most versatile biocatalysts for synthesizing nonproteinogenic amino acids. α,α-Disubstituted quaternary amino acids, such as 1-aminocyclopentane-1-carboxylic acid (cycloleucine), are useful building blocks for pharmaceuticals. In this study, sta...
Gespeichert in:
Veröffentlicht in: | Journal of the American Chemical Society 2024-05, Vol.146 (21), p.14672-14684 |
---|---|
Hauptverfasser: | , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | 14684 |
---|---|
container_issue | 21 |
container_start_page | 14672 |
container_title | Journal of the American Chemical Society |
container_volume | 146 |
creator | Abad, Abner N. D. Seshadri, Kaushik Ohashi, Masao Delgadillo, David A. de Moraes, Lygia S. Nagasawa, Kyle K. Liu, Mengting Johnson, Samuel Nelson, Hosea M. Tang, Yi |
description | Pyridoxal 5′-phosphate (PLP)-dependent enzymes are the most versatile biocatalysts for synthesizing nonproteinogenic amino acids. α,α-Disubstituted quaternary amino acids, such as 1-aminocyclopentane-1-carboxylic acid (cycloleucine), are useful building blocks for pharmaceuticals. In this study, starting with the biosynthesis of fusarilin A, we discovered a family of PLP-dependent enzymes that can facilitate tandem carbon–carbon forming steps to catalyze an overall [3 + 2]-annulation. In the first step, the cycloleucine synthases use SAM as the latent electrophile and an in situ-generated enamine as the nucleophile for γ-substitution. Whereas previously characterized γ-replacement enzymes protonate the resulting α-carbon and release the acyclic amino acid, cycloleucine synthases can catalyze an additional, intramolecular aldol or Mannich reaction with the nucleophilic α-carbon to form the substituted cyclopentane. Overall, the net [3 + 2]-annulation reaction can lead to 2-hydroxy or 2-aminocycloleucine products. These studies further expand the biocatalytic scope of PLP-dependent enzymes. |
doi_str_mv | 10.1021/jacs.4c02142 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11390345</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3153553827</sourcerecordid><originalsourceid>FETCH-LOGICAL-a413t-4e5aabe1614d336e7859431a5afb5dfdfeb36b7d7aafc5ac05c310929787f1b53</originalsourceid><addsrcrecordid>eNqFkc-O0zAQhy3Eii2FG2eUIwfS9cR2kp4QSpc_0kqsBJw4WBNnskmV2sVOKrInnolH4klI1LILEhIn2_Ln34znY-wZ8BXwBC62aMJKmmkrkwdsASrhsYIkfcgWnPMkzvJUnLPHIWyno0xyeMTORZ5JkeewYF82bTDuQH6M0FZR0aBH05Nvb7FvnY1cHV2Pvq3cN-wi9fP7j_i6cWHfYE_xhvZkK7J9VIymcx0NprUUfRxt32Cg8ISd1dgFenpal-zzm8tPxbv46sPb98XrqxgliD6WpBBLghRkJURKWa7WUgAqrEtV1VVNpUjLrMoQa6PQcGUE8HWyzvKshlKJJXt1zN0P5Y4qM3XksdN73-7Qj9phq_--sW2jb9xBA4g1F3JOeHFK8O7rQKHXu2ks1HVoyQ1BC1BCKZEn2f9RrpScHMCMvjyixrsQPNV3LQHXszs9u9MndxP-_M9v3MG_Zd2Xnl9t3eDtNNV_Z_0C-eWlgA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3055452017</pqid></control><display><type>article</type><title>Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases</title><source>MEDLINE</source><source>ACS Publications</source><creator>Abad, Abner N. D. ; Seshadri, Kaushik ; Ohashi, Masao ; Delgadillo, David A. ; de Moraes, Lygia S. ; Nagasawa, Kyle K. ; Liu, Mengting ; Johnson, Samuel ; Nelson, Hosea M. ; Tang, Yi</creator><creatorcontrib>Abad, Abner N. D. ; Seshadri, Kaushik ; Ohashi, Masao ; Delgadillo, David A. ; de Moraes, Lygia S. ; Nagasawa, Kyle K. ; Liu, Mengting ; Johnson, Samuel ; Nelson, Hosea M. ; Tang, Yi</creatorcontrib><description>Pyridoxal 5′-phosphate (PLP)-dependent enzymes are the most versatile biocatalysts for synthesizing nonproteinogenic amino acids. α,α-Disubstituted quaternary amino acids, such as 1-aminocyclopentane-1-carboxylic acid (cycloleucine), are useful building blocks for pharmaceuticals. In this study, starting with the biosynthesis of fusarilin A, we discovered a family of PLP-dependent enzymes that can facilitate tandem carbon–carbon forming steps to catalyze an overall [3 + 2]-annulation. In the first step, the cycloleucine synthases use SAM as the latent electrophile and an in situ-generated enamine as the nucleophile for γ-substitution. Whereas previously characterized γ-replacement enzymes protonate the resulting α-carbon and release the acyclic amino acid, cycloleucine synthases can catalyze an additional, intramolecular aldol or Mannich reaction with the nucleophilic α-carbon to form the substituted cyclopentane. Overall, the net [3 + 2]-annulation reaction can lead to 2-hydroxy or 2-aminocycloleucine products. These studies further expand the biocatalytic scope of PLP-dependent enzymes.</description><identifier>ISSN: 0002-7863</identifier><identifier>ISSN: 1520-5126</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/jacs.4c02142</identifier><identifier>PMID: 38743881</identifier><language>eng</language><publisher>United States: American Chemical Society</publisher><subject>amino acids ; Biocatalysis ; biosynthesis ; Cyclopentanes - chemistry ; Cyclopentanes - metabolism ; drugs ; enamines ; family ; Lewis acids ; Lewis bases ; Molecular Structure ; pyridoxal ; Pyridoxal Phosphate - chemistry ; Pyridoxal Phosphate - metabolism</subject><ispartof>Journal of the American Chemical Society, 2024-05, Vol.146 (21), p.14672-14684</ispartof><rights>2024 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a413t-4e5aabe1614d336e7859431a5afb5dfdfeb36b7d7aafc5ac05c310929787f1b53</citedby><cites>FETCH-LOGICAL-a413t-4e5aabe1614d336e7859431a5afb5dfdfeb36b7d7aafc5ac05c310929787f1b53</cites><orcidid>0000-0001-7103-541X ; 0000-0001-9167-733X ; 0000-0003-1597-0141 ; 0000-0002-0897-4470</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://pubs.acs.org/doi/pdf/10.1021/jacs.4c02142$$EPDF$$P50$$Gacs$$H</linktopdf><linktohtml>$$Uhttps://pubs.acs.org/doi/10.1021/jacs.4c02142$$EHTML$$P50$$Gacs$$H</linktohtml><link.rule.ids>230,314,776,780,881,2751,27055,27903,27904,56717,56767</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38743881$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Abad, Abner N. D.</creatorcontrib><creatorcontrib>Seshadri, Kaushik</creatorcontrib><creatorcontrib>Ohashi, Masao</creatorcontrib><creatorcontrib>Delgadillo, David A.</creatorcontrib><creatorcontrib>de Moraes, Lygia S.</creatorcontrib><creatorcontrib>Nagasawa, Kyle K.</creatorcontrib><creatorcontrib>Liu, Mengting</creatorcontrib><creatorcontrib>Johnson, Samuel</creatorcontrib><creatorcontrib>Nelson, Hosea M.</creatorcontrib><creatorcontrib>Tang, Yi</creatorcontrib><title>Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases</title><title>Journal of the American Chemical Society</title><addtitle>J. Am. Chem. Soc</addtitle><description>Pyridoxal 5′-phosphate (PLP)-dependent enzymes are the most versatile biocatalysts for synthesizing nonproteinogenic amino acids. α,α-Disubstituted quaternary amino acids, such as 1-aminocyclopentane-1-carboxylic acid (cycloleucine), are useful building blocks for pharmaceuticals. In this study, starting with the biosynthesis of fusarilin A, we discovered a family of PLP-dependent enzymes that can facilitate tandem carbon–carbon forming steps to catalyze an overall [3 + 2]-annulation. In the first step, the cycloleucine synthases use SAM as the latent electrophile and an in situ-generated enamine as the nucleophile for γ-substitution. Whereas previously characterized γ-replacement enzymes protonate the resulting α-carbon and release the acyclic amino acid, cycloleucine synthases can catalyze an additional, intramolecular aldol or Mannich reaction with the nucleophilic α-carbon to form the substituted cyclopentane. Overall, the net [3 + 2]-annulation reaction can lead to 2-hydroxy or 2-aminocycloleucine products. These studies further expand the biocatalytic scope of PLP-dependent enzymes.</description><subject>amino acids</subject><subject>Biocatalysis</subject><subject>biosynthesis</subject><subject>Cyclopentanes - chemistry</subject><subject>Cyclopentanes - metabolism</subject><subject>drugs</subject><subject>enamines</subject><subject>family</subject><subject>Lewis acids</subject><subject>Lewis bases</subject><subject>Molecular Structure</subject><subject>pyridoxal</subject><subject>Pyridoxal Phosphate - chemistry</subject><subject>Pyridoxal Phosphate - metabolism</subject><issn>0002-7863</issn><issn>1520-5126</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkc-O0zAQhy3Eii2FG2eUIwfS9cR2kp4QSpc_0kqsBJw4WBNnskmV2sVOKrInnolH4klI1LILEhIn2_Ln34znY-wZ8BXwBC62aMJKmmkrkwdsASrhsYIkfcgWnPMkzvJUnLPHIWyno0xyeMTORZ5JkeewYF82bTDuQH6M0FZR0aBH05Nvb7FvnY1cHV2Pvq3cN-wi9fP7j_i6cWHfYE_xhvZkK7J9VIymcx0NprUUfRxt32Cg8ISd1dgFenpal-zzm8tPxbv46sPb98XrqxgliD6WpBBLghRkJURKWa7WUgAqrEtV1VVNpUjLrMoQa6PQcGUE8HWyzvKshlKJJXt1zN0P5Y4qM3XksdN73-7Qj9phq_--sW2jb9xBA4g1F3JOeHFK8O7rQKHXu2ks1HVoyQ1BC1BCKZEn2f9RrpScHMCMvjyixrsQPNV3LQHXszs9u9MndxP-_M9v3MG_Zd2Xnl9t3eDtNNV_Z_0C-eWlgA</recordid><startdate>20240529</startdate><enddate>20240529</enddate><creator>Abad, Abner N. D.</creator><creator>Seshadri, Kaushik</creator><creator>Ohashi, Masao</creator><creator>Delgadillo, David A.</creator><creator>de Moraes, Lygia S.</creator><creator>Nagasawa, Kyle K.</creator><creator>Liu, Mengting</creator><creator>Johnson, Samuel</creator><creator>Nelson, Hosea M.</creator><creator>Tang, Yi</creator><general>American Chemical Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7S9</scope><scope>L.6</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-7103-541X</orcidid><orcidid>https://orcid.org/0000-0001-9167-733X</orcidid><orcidid>https://orcid.org/0000-0003-1597-0141</orcidid><orcidid>https://orcid.org/0000-0002-0897-4470</orcidid></search><sort><creationdate>20240529</creationdate><title>Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases</title><author>Abad, Abner N. D. ; Seshadri, Kaushik ; Ohashi, Masao ; Delgadillo, David A. ; de Moraes, Lygia S. ; Nagasawa, Kyle K. ; Liu, Mengting ; Johnson, Samuel ; Nelson, Hosea M. ; Tang, Yi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a413t-4e5aabe1614d336e7859431a5afb5dfdfeb36b7d7aafc5ac05c310929787f1b53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>amino acids</topic><topic>Biocatalysis</topic><topic>biosynthesis</topic><topic>Cyclopentanes - chemistry</topic><topic>Cyclopentanes - metabolism</topic><topic>drugs</topic><topic>enamines</topic><topic>family</topic><topic>Lewis acids</topic><topic>Lewis bases</topic><topic>Molecular Structure</topic><topic>pyridoxal</topic><topic>Pyridoxal Phosphate - chemistry</topic><topic>Pyridoxal Phosphate - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Abad, Abner N. D.</creatorcontrib><creatorcontrib>Seshadri, Kaushik</creatorcontrib><creatorcontrib>Ohashi, Masao</creatorcontrib><creatorcontrib>Delgadillo, David A.</creatorcontrib><creatorcontrib>de Moraes, Lygia S.</creatorcontrib><creatorcontrib>Nagasawa, Kyle K.</creatorcontrib><creatorcontrib>Liu, Mengting</creatorcontrib><creatorcontrib>Johnson, Samuel</creatorcontrib><creatorcontrib>Nelson, Hosea M.</creatorcontrib><creatorcontrib>Tang, Yi</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>AGRICOLA</collection><collection>AGRICOLA - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of the American Chemical Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abad, Abner N. D.</au><au>Seshadri, Kaushik</au><au>Ohashi, Masao</au><au>Delgadillo, David A.</au><au>de Moraes, Lygia S.</au><au>Nagasawa, Kyle K.</au><au>Liu, Mengting</au><au>Johnson, Samuel</au><au>Nelson, Hosea M.</au><au>Tang, Yi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>2024-05-29</date><risdate>2024</risdate><volume>146</volume><issue>21</issue><spage>14672</spage><epage>14684</epage><pages>14672-14684</pages><issn>0002-7863</issn><issn>1520-5126</issn><eissn>1520-5126</eissn><abstract>Pyridoxal 5′-phosphate (PLP)-dependent enzymes are the most versatile biocatalysts for synthesizing nonproteinogenic amino acids. α,α-Disubstituted quaternary amino acids, such as 1-aminocyclopentane-1-carboxylic acid (cycloleucine), are useful building blocks for pharmaceuticals. In this study, starting with the biosynthesis of fusarilin A, we discovered a family of PLP-dependent enzymes that can facilitate tandem carbon–carbon forming steps to catalyze an overall [3 + 2]-annulation. In the first step, the cycloleucine synthases use SAM as the latent electrophile and an in situ-generated enamine as the nucleophile for γ-substitution. Whereas previously characterized γ-replacement enzymes protonate the resulting α-carbon and release the acyclic amino acid, cycloleucine synthases can catalyze an additional, intramolecular aldol or Mannich reaction with the nucleophilic α-carbon to form the substituted cyclopentane. Overall, the net [3 + 2]-annulation reaction can lead to 2-hydroxy or 2-aminocycloleucine products. These studies further expand the biocatalytic scope of PLP-dependent enzymes.</abstract><cop>United States</cop><pub>American Chemical Society</pub><pmid>38743881</pmid><doi>10.1021/jacs.4c02142</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-7103-541X</orcidid><orcidid>https://orcid.org/0000-0001-9167-733X</orcidid><orcidid>https://orcid.org/0000-0003-1597-0141</orcidid><orcidid>https://orcid.org/0000-0002-0897-4470</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0002-7863 |
ispartof | Journal of the American Chemical Society, 2024-05, Vol.146 (21), p.14672-14684 |
issn | 0002-7863 1520-5126 1520-5126 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11390345 |
source | MEDLINE; ACS Publications |
subjects | amino acids Biocatalysis biosynthesis Cyclopentanes - chemistry Cyclopentanes - metabolism drugs enamines family Lewis acids Lewis bases Molecular Structure pyridoxal Pyridoxal Phosphate - chemistry Pyridoxal Phosphate - metabolism |
title | Discovery and Characterization of Pyridoxal 5′-Phosphate-Dependent Cycloleucine Synthases |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-23T08%3A19%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Discovery%20and%20Characterization%20of%20Pyridoxal%205%E2%80%B2-Phosphate-Dependent%20Cycloleucine%20Synthases&rft.jtitle=Journal%20of%20the%20American%20Chemical%20Society&rft.au=Abad,%20Abner%20N.%20D.&rft.date=2024-05-29&rft.volume=146&rft.issue=21&rft.spage=14672&rft.epage=14684&rft.pages=14672-14684&rft.issn=0002-7863&rft.eissn=1520-5126&rft_id=info:doi/10.1021/jacs.4c02142&rft_dat=%3Cproquest_pubme%3E3153553827%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3055452017&rft_id=info:pmid/38743881&rfr_iscdi=true |