Active interface bulging in Bacillus subtilis swarms promotes self-assembly and biofilm formation
Microbial communities such as biofilms are commonly found at interfaces. However, it is unclear how the physical environment of interfaces may contribute to the development and behavior of surface-associated microbial communities. Combining multimode imaging, single-cell tracking, and numerical simu...
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Veröffentlicht in: | Proceedings of the National Academy of Sciences - PNAS 2024-07, Vol.121 (31), p.e2322025121 |
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creator | Liu, Siyu Li, Ye Xu, Haoran Kearns, Daniel B Wu, Yilin |
description | Microbial communities such as biofilms are commonly found at interfaces. However, it is unclear how the physical environment of interfaces may contribute to the development and behavior of surface-associated microbial communities. Combining multimode imaging, single-cell tracking, and numerical simulations, here, we found that activity-induced interface bulging promotes colony biofilm formation in
swarms presumably via segregation and enrichment of sessile cells in the bulging area. Specifically, the diffusivity of passive particles is ~50% lower inside the bulging area than elsewhere, which enables a diffusion-trapping mechanism for self-assembly and may account for the enrichment of sessile cells. We also uncovered a quasilinear relation between cell speed and surface-packing density that underlies the process of active interface bulging. Guided by the speed-density relation, we demonstrated reversible formation of liquid bulges by manipulating the speed and local density of cells with light. Over the course of development, the active bulges turned into striped biofilm structures, which eventually give rise to a large-scale ridge pattern. Our findings reveal a unique physical mechanism of biofilm formation at air-solid interface, which is pertinent to engineering living materials and directed self-assembly in active fluids. |
doi_str_mv | 10.1073/pnas.2322025121 |
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swarms presumably via segregation and enrichment of sessile cells in the bulging area. Specifically, the diffusivity of passive particles is ~50% lower inside the bulging area than elsewhere, which enables a diffusion-trapping mechanism for self-assembly and may account for the enrichment of sessile cells. We also uncovered a quasilinear relation between cell speed and surface-packing density that underlies the process of active interface bulging. Guided by the speed-density relation, we demonstrated reversible formation of liquid bulges by manipulating the speed and local density of cells with light. Over the course of development, the active bulges turned into striped biofilm structures, which eventually give rise to a large-scale ridge pattern. Our findings reveal a unique physical mechanism of biofilm formation at air-solid interface, which is pertinent to engineering living materials and directed self-assembly in active fluids.</description><identifier>ISSN: 0027-8424</identifier><identifier>ISSN: 1091-6490</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.2322025121</identifier><identifier>PMID: 39052827</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Bacillus subtilis ; Bacillus subtilis - physiology ; Biofilms ; Biofilms - growth & development ; Biological Sciences ; Diffusion rate ; Interfaces ; Microbial activity ; Microbiomes ; Microorganisms ; Packing density ; Physical Sciences ; Self-assembly ; Swarming behavior</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2024-07, Vol.121 (31), p.e2322025121</ispartof><rights>Copyright National Academy of Sciences Jul 30, 2024</rights><rights>Copyright © 2024 the Author(s). Published by PNAS. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c376t-cff22be807cea230c0f31087f76e546bf1a9447aa8b75d27437df2d0dd382ddc3</cites><orcidid>0000-0002-3460-8378 ; 0000-0001-9613-297X ; 0000-0002-0392-2137</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11295035/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11295035/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39052827$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Siyu</creatorcontrib><creatorcontrib>Li, Ye</creatorcontrib><creatorcontrib>Xu, Haoran</creatorcontrib><creatorcontrib>Kearns, Daniel B</creatorcontrib><creatorcontrib>Wu, Yilin</creatorcontrib><title>Active interface bulging in Bacillus subtilis swarms promotes self-assembly and biofilm formation</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Microbial communities such as biofilms are commonly found at interfaces. However, it is unclear how the physical environment of interfaces may contribute to the development and behavior of surface-associated microbial communities. Combining multimode imaging, single-cell tracking, and numerical simulations, here, we found that activity-induced interface bulging promotes colony biofilm formation in
swarms presumably via segregation and enrichment of sessile cells in the bulging area. Specifically, the diffusivity of passive particles is ~50% lower inside the bulging area than elsewhere, which enables a diffusion-trapping mechanism for self-assembly and may account for the enrichment of sessile cells. We also uncovered a quasilinear relation between cell speed and surface-packing density that underlies the process of active interface bulging. Guided by the speed-density relation, we demonstrated reversible formation of liquid bulges by manipulating the speed and local density of cells with light. Over the course of development, the active bulges turned into striped biofilm structures, which eventually give rise to a large-scale ridge pattern. Our findings reveal a unique physical mechanism of biofilm formation at air-solid interface, which is pertinent to engineering living materials and directed self-assembly in active fluids.</description><subject>Bacillus subtilis</subject><subject>Bacillus subtilis - physiology</subject><subject>Biofilms</subject><subject>Biofilms - growth & development</subject><subject>Biological Sciences</subject><subject>Diffusion rate</subject><subject>Interfaces</subject><subject>Microbial activity</subject><subject>Microbiomes</subject><subject>Microorganisms</subject><subject>Packing density</subject><subject>Physical Sciences</subject><subject>Self-assembly</subject><subject>Swarming behavior</subject><issn>0027-8424</issn><issn>1091-6490</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkU1P3DAQhq0K1N0CZ24oEpdesju2kzg5VQtqCxJSL-VsTfyxNXLsrZ0s4t83Kz5Ke_J45plXM_MSck5hRUHw9S5gXjHOGLCaMvqBLCl0tGyqDo7IEoCJsq1YtSCfcn4AgK5u4SNZ8A5q1jKxJLhRo9ubwoXRJIvKFP3kty5s50xxhcp5P-UiT_3ovJuDR0xDLnYpDnE08994W2LOZuj9U4FBF72L1vmhsDENOLoYTsmxRZ_N2ct7Qu6_ff15fVPe_fh-e725KxUXzVgqaxnrTQtCGWQcFFhOoRVWNKaumt5S7KpKILa9qDUTFRfaMg1a85ZprfgJ-fKsu5v6wWhlwpjQy11yA6YnGdHJfyvB_ZLbuJeUsq4GXs8Kn18UUvw9mTzKwWVlvMdg4pQlh7YSArqGzujlf-hDnFKY9ztQYr4vbQ6C62dKpZhzMvZtGgry4J88-Cf_-jd3XLxf4o1_NYz_AcIcmRw</recordid><startdate>20240730</startdate><enddate>20240730</enddate><creator>Liu, Siyu</creator><creator>Li, Ye</creator><creator>Xu, Haoran</creator><creator>Kearns, Daniel B</creator><creator>Wu, Yilin</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-3460-8378</orcidid><orcidid>https://orcid.org/0000-0001-9613-297X</orcidid><orcidid>https://orcid.org/0000-0002-0392-2137</orcidid></search><sort><creationdate>20240730</creationdate><title>Active interface bulging in Bacillus subtilis swarms promotes self-assembly and biofilm formation</title><author>Liu, Siyu ; Li, Ye ; Xu, Haoran ; Kearns, Daniel B ; Wu, Yilin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c376t-cff22be807cea230c0f31087f76e546bf1a9447aa8b75d27437df2d0dd382ddc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Bacillus subtilis</topic><topic>Bacillus subtilis - physiology</topic><topic>Biofilms</topic><topic>Biofilms - growth & development</topic><topic>Biological Sciences</topic><topic>Diffusion rate</topic><topic>Interfaces</topic><topic>Microbial activity</topic><topic>Microbiomes</topic><topic>Microorganisms</topic><topic>Packing density</topic><topic>Physical Sciences</topic><topic>Self-assembly</topic><topic>Swarming behavior</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Siyu</creatorcontrib><creatorcontrib>Li, Ye</creatorcontrib><creatorcontrib>Xu, Haoran</creatorcontrib><creatorcontrib>Kearns, Daniel B</creatorcontrib><creatorcontrib>Wu, Yilin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Siyu</au><au>Li, Ye</au><au>Xu, Haoran</au><au>Kearns, Daniel B</au><au>Wu, Yilin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Active interface bulging in Bacillus subtilis swarms promotes self-assembly and biofilm formation</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2024-07-30</date><risdate>2024</risdate><volume>121</volume><issue>31</issue><spage>e2322025121</spage><pages>e2322025121-</pages><issn>0027-8424</issn><issn>1091-6490</issn><eissn>1091-6490</eissn><abstract>Microbial communities such as biofilms are commonly found at interfaces. 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swarms presumably via segregation and enrichment of sessile cells in the bulging area. Specifically, the diffusivity of passive particles is ~50% lower inside the bulging area than elsewhere, which enables a diffusion-trapping mechanism for self-assembly and may account for the enrichment of sessile cells. We also uncovered a quasilinear relation between cell speed and surface-packing density that underlies the process of active interface bulging. Guided by the speed-density relation, we demonstrated reversible formation of liquid bulges by manipulating the speed and local density of cells with light. Over the course of development, the active bulges turned into striped biofilm structures, which eventually give rise to a large-scale ridge pattern. Our findings reveal a unique physical mechanism of biofilm formation at air-solid interface, which is pertinent to engineering living materials and directed self-assembly in active fluids.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>39052827</pmid><doi>10.1073/pnas.2322025121</doi><orcidid>https://orcid.org/0000-0002-3460-8378</orcidid><orcidid>https://orcid.org/0000-0001-9613-297X</orcidid><orcidid>https://orcid.org/0000-0002-0392-2137</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Bacillus subtilis Bacillus subtilis - physiology Biofilms Biofilms - growth & development Biological Sciences Diffusion rate Interfaces Microbial activity Microbiomes Microorganisms Packing density Physical Sciences Self-assembly Swarming behavior |
title | Active interface bulging in Bacillus subtilis swarms promotes self-assembly and biofilm formation |
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