SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images
Several machine learning studies have used optical coherence tomography (OCT) for multiple sclerosis (MS) classification with promising outcomes. Infrared reflectance scanning laser ophthalmoscopy (IR-SLO) captures high-resolution fundus images, commonly combined with OCT for fixed B-scan positions....
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creator | Arian, Roya Aghababaei, Ali Soltanipour, Asieh Khodabandeh, Zahra Rakhshani, Sajed Iyer, Shwasa B Ashtari, Fereshteh Rabbani, Hossein Kafieh, Raheleh |
description | Several machine learning studies have used optical coherence tomography (OCT) for multiple sclerosis (MS) classification with promising outcomes. Infrared reflectance scanning laser ophthalmoscopy (IR-SLO) captures high-resolution fundus images, commonly combined with OCT for fixed B-scan positions. However, no machine learning research has utilized IR-SLO images for automated MS diagnosis.
This study utilized a dataset comprised of IR-SLO images and OCT data from Isfahan, Iran, encompassing 32 MS and 70 healthy individuals. A number of convolutional neural networks (CNNs)-namely, VGG-16, VGG-19, ResNet-50, ResNet-101, and a custom architecture-were trained with both IR-SLO images and OCT thickness maps as two separate input datasets. The highest performing models for each modality were then integrated to create a bimodal model that receives the combination of OCT thickness maps and IR-SLO images. Subject-wise data splitting was employed to prevent data leakage among training, validation, and testing sets.
Overall, images of the 102 patients from the internal dataset were divided into test, validation, and training subsets. Subsequently, we employed a bootstrapping approach on the training data through iterative sampling with replacement. The performance of the proposed bimodal model was evaluated on the internal test dataset, demonstrating an accuracy of 92.40% ± 4.1% (95% confidence interval [CI], 83.61-98.08), sensitivity of 95.43% ± 5.75% (95% CI, 83.71-100.0), specificity of 92.82% ± 3.72% (95% CI, 81.15-96.77), area under the receiver operating characteristic (AUROC) curve of 96.99% ± 2.99% (95% CI, 86.11-99.78), and area under the precision-recall curve (AUPRC) of 97.27% ± 2.94% (95% CI, 86.83-99.83). Furthermore, to assess the model generalization ability, we examined its performance on an external test dataset following the same bootstrap methodology, achieving promising results, with accuracy of 85.43% ± 0.08% (95% CI, 71.43-100.0), sensitivity of 97.33% ± 0.06% (95% CI, 83.33-100.0), specificity of 84.6% ± 0.10% (95% CI, 71.43-100.0), AUROC curve of 99.67% ± 0.02% (95% CI, 95.63-100.0), and AUPRC of 99.65% ± 0.02% (95% CI, 94.90-100.0).
Incorporating both modalities improves the performance of automated diagnosis of MS, showcasing the potential of utilizing IR-SLO as a complementary tool alongside OCT.
Should the results of our proposed bimodal model be validated in future work with larger and more diverse datasets, diagnosis of MS based on both |
doi_str_mv | 10.1167/tvst.13.7.13 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11262482</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3081780867</sourcerecordid><originalsourceid>FETCH-LOGICAL-c272t-db9b42c874cc86739587fa0ed77f9d90a2a552bdfda56cc36b58f1b42e1f66283</originalsourceid><addsrcrecordid>eNpVkU1v1DAQhi0EotXSG2fkIweyxE5iJ1wQLC2stLAS256tiTP5QI4dbG-l_R384Sa0VMWH8UjzzjOjeQl5zdI1Y0K-j7chrlm2lnN4Rs45E3nCi4o9f5KfkYsQfqXzE2WR5-IlOcuqlEnBq3Py57DbJz8wfqCXtgerB9vR70cTh8kgPWiD3oUh0C8DdPZv9hlPzjZ0P8VBg6Eb16NHq5Feu9F1Hqb-RG_Cgtna1oPHhv7E1qCOsKgOGqxdqjsI6GdMH3swowvaTSe6HaHD8Iq8aMEEvHj4V-Tm6vJ68y3Z7b9uN592ieaSx6SpqzrnupS51qWQWVWUsoUUGynbqqlS4FAUvG7aBgqhdSbqomzZ3IKsFYKX2Yp8vOdOx3rERqONHoya_DCCPykHg_q_Yodede5WMcYFz0s-E94-ELz7fcQQ1TgEjcaARXcMKktLJst02W5F3t1L9XzR4LF9nMNStXipFi8Vy5Scwyx_83S3R_E_57I724Ce9A</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3081780867</pqid></control><display><type>article</type><title>SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Arian, Roya ; Aghababaei, Ali ; Soltanipour, Asieh ; Khodabandeh, Zahra ; Rakhshani, Sajed ; Iyer, Shwasa B ; Ashtari, Fereshteh ; Rabbani, Hossein ; Kafieh, Raheleh</creator><creatorcontrib>Arian, Roya ; Aghababaei, Ali ; Soltanipour, Asieh ; Khodabandeh, Zahra ; Rakhshani, Sajed ; Iyer, Shwasa B ; Ashtari, Fereshteh ; Rabbani, Hossein ; Kafieh, Raheleh</creatorcontrib><description>Several machine learning studies have used optical coherence tomography (OCT) for multiple sclerosis (MS) classification with promising outcomes. Infrared reflectance scanning laser ophthalmoscopy (IR-SLO) captures high-resolution fundus images, commonly combined with OCT for fixed B-scan positions. However, no machine learning research has utilized IR-SLO images for automated MS diagnosis.
This study utilized a dataset comprised of IR-SLO images and OCT data from Isfahan, Iran, encompassing 32 MS and 70 healthy individuals. A number of convolutional neural networks (CNNs)-namely, VGG-16, VGG-19, ResNet-50, ResNet-101, and a custom architecture-were trained with both IR-SLO images and OCT thickness maps as two separate input datasets. The highest performing models for each modality were then integrated to create a bimodal model that receives the combination of OCT thickness maps and IR-SLO images. Subject-wise data splitting was employed to prevent data leakage among training, validation, and testing sets.
Overall, images of the 102 patients from the internal dataset were divided into test, validation, and training subsets. Subsequently, we employed a bootstrapping approach on the training data through iterative sampling with replacement. The performance of the proposed bimodal model was evaluated on the internal test dataset, demonstrating an accuracy of 92.40% ± 4.1% (95% confidence interval [CI], 83.61-98.08), sensitivity of 95.43% ± 5.75% (95% CI, 83.71-100.0), specificity of 92.82% ± 3.72% (95% CI, 81.15-96.77), area under the receiver operating characteristic (AUROC) curve of 96.99% ± 2.99% (95% CI, 86.11-99.78), and area under the precision-recall curve (AUPRC) of 97.27% ± 2.94% (95% CI, 86.83-99.83). Furthermore, to assess the model generalization ability, we examined its performance on an external test dataset following the same bootstrap methodology, achieving promising results, with accuracy of 85.43% ± 0.08% (95% CI, 71.43-100.0), sensitivity of 97.33% ± 0.06% (95% CI, 83.33-100.0), specificity of 84.6% ± 0.10% (95% CI, 71.43-100.0), AUROC curve of 99.67% ± 0.02% (95% CI, 95.63-100.0), and AUPRC of 99.65% ± 0.02% (95% CI, 94.90-100.0).
Incorporating both modalities improves the performance of automated diagnosis of MS, showcasing the potential of utilizing IR-SLO as a complementary tool alongside OCT.
Should the results of our proposed bimodal model be validated in future work with larger and more diverse datasets, diagnosis of MS based on both OCT and IR-SLO can be reliably integrated into routine clinical practice.</description><identifier>ISSN: 2164-2591</identifier><identifier>EISSN: 2164-2591</identifier><identifier>DOI: 10.1167/tvst.13.7.13</identifier><identifier>PMID: 39017629</identifier><language>eng</language><publisher>United States: The Association for Research in Vision and Ophthalmology</publisher><subject>Adult ; Artificial Intelligence ; Female ; Humans ; Infrared Rays ; Machine Learning ; Male ; Middle Aged ; Multiple Sclerosis - diagnosis ; Multiple Sclerosis - diagnostic imaging ; Multiple Sclerosis - pathology ; Neural Networks, Computer ; Ophthalmoscopy - methods ; ROC Curve ; Tomography, Optical Coherence - methods</subject><ispartof>Translational vision science & technology, 2024-07, Vol.13 (7), p.13</ispartof><rights>Copyright 2024 The Authors 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c272t-db9b42c874cc86739587fa0ed77f9d90a2a552bdfda56cc36b58f1b42e1f66283</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11262482/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11262482/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39017629$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Arian, Roya</creatorcontrib><creatorcontrib>Aghababaei, Ali</creatorcontrib><creatorcontrib>Soltanipour, Asieh</creatorcontrib><creatorcontrib>Khodabandeh, Zahra</creatorcontrib><creatorcontrib>Rakhshani, Sajed</creatorcontrib><creatorcontrib>Iyer, Shwasa B</creatorcontrib><creatorcontrib>Ashtari, Fereshteh</creatorcontrib><creatorcontrib>Rabbani, Hossein</creatorcontrib><creatorcontrib>Kafieh, Raheleh</creatorcontrib><title>SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images</title><title>Translational vision science & technology</title><addtitle>Transl Vis Sci Technol</addtitle><description>Several machine learning studies have used optical coherence tomography (OCT) for multiple sclerosis (MS) classification with promising outcomes. Infrared reflectance scanning laser ophthalmoscopy (IR-SLO) captures high-resolution fundus images, commonly combined with OCT for fixed B-scan positions. However, no machine learning research has utilized IR-SLO images for automated MS diagnosis.
This study utilized a dataset comprised of IR-SLO images and OCT data from Isfahan, Iran, encompassing 32 MS and 70 healthy individuals. A number of convolutional neural networks (CNNs)-namely, VGG-16, VGG-19, ResNet-50, ResNet-101, and a custom architecture-were trained with both IR-SLO images and OCT thickness maps as two separate input datasets. The highest performing models for each modality were then integrated to create a bimodal model that receives the combination of OCT thickness maps and IR-SLO images. Subject-wise data splitting was employed to prevent data leakage among training, validation, and testing sets.
Overall, images of the 102 patients from the internal dataset were divided into test, validation, and training subsets. Subsequently, we employed a bootstrapping approach on the training data through iterative sampling with replacement. The performance of the proposed bimodal model was evaluated on the internal test dataset, demonstrating an accuracy of 92.40% ± 4.1% (95% confidence interval [CI], 83.61-98.08), sensitivity of 95.43% ± 5.75% (95% CI, 83.71-100.0), specificity of 92.82% ± 3.72% (95% CI, 81.15-96.77), area under the receiver operating characteristic (AUROC) curve of 96.99% ± 2.99% (95% CI, 86.11-99.78), and area under the precision-recall curve (AUPRC) of 97.27% ± 2.94% (95% CI, 86.83-99.83). Furthermore, to assess the model generalization ability, we examined its performance on an external test dataset following the same bootstrap methodology, achieving promising results, with accuracy of 85.43% ± 0.08% (95% CI, 71.43-100.0), sensitivity of 97.33% ± 0.06% (95% CI, 83.33-100.0), specificity of 84.6% ± 0.10% (95% CI, 71.43-100.0), AUROC curve of 99.67% ± 0.02% (95% CI, 95.63-100.0), and AUPRC of 99.65% ± 0.02% (95% CI, 94.90-100.0).
Incorporating both modalities improves the performance of automated diagnosis of MS, showcasing the potential of utilizing IR-SLO as a complementary tool alongside OCT.
Should the results of our proposed bimodal model be validated in future work with larger and more diverse datasets, diagnosis of MS based on both OCT and IR-SLO can be reliably integrated into routine clinical practice.</description><subject>Adult</subject><subject>Artificial Intelligence</subject><subject>Female</subject><subject>Humans</subject><subject>Infrared Rays</subject><subject>Machine Learning</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Multiple Sclerosis - diagnosis</subject><subject>Multiple Sclerosis - diagnostic imaging</subject><subject>Multiple Sclerosis - pathology</subject><subject>Neural Networks, Computer</subject><subject>Ophthalmoscopy - methods</subject><subject>ROC Curve</subject><subject>Tomography, Optical Coherence - methods</subject><issn>2164-2591</issn><issn>2164-2591</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkU1v1DAQhi0EotXSG2fkIweyxE5iJ1wQLC2stLAS256tiTP5QI4dbG-l_R384Sa0VMWH8UjzzjOjeQl5zdI1Y0K-j7chrlm2lnN4Rs45E3nCi4o9f5KfkYsQfqXzE2WR5-IlOcuqlEnBq3Py57DbJz8wfqCXtgerB9vR70cTh8kgPWiD3oUh0C8DdPZv9hlPzjZ0P8VBg6Eb16NHq5Feu9F1Hqb-RG_Cgtna1oPHhv7E1qCOsKgOGqxdqjsI6GdMH3swowvaTSe6HaHD8Iq8aMEEvHj4V-Tm6vJ68y3Z7b9uN592ieaSx6SpqzrnupS51qWQWVWUsoUUGynbqqlS4FAUvG7aBgqhdSbqomzZ3IKsFYKX2Yp8vOdOx3rERqONHoya_DCCPykHg_q_Yodede5WMcYFz0s-E94-ELz7fcQQ1TgEjcaARXcMKktLJst02W5F3t1L9XzR4LF9nMNStXipFi8Vy5Scwyx_83S3R_E_57I724Ce9A</recordid><startdate>20240701</startdate><enddate>20240701</enddate><creator>Arian, Roya</creator><creator>Aghababaei, Ali</creator><creator>Soltanipour, Asieh</creator><creator>Khodabandeh, Zahra</creator><creator>Rakhshani, Sajed</creator><creator>Iyer, Shwasa B</creator><creator>Ashtari, Fereshteh</creator><creator>Rabbani, Hossein</creator><creator>Kafieh, Raheleh</creator><general>The Association for Research in Vision and Ophthalmology</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20240701</creationdate><title>SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images</title><author>Arian, Roya ; Aghababaei, Ali ; Soltanipour, Asieh ; Khodabandeh, Zahra ; Rakhshani, Sajed ; Iyer, Shwasa B ; Ashtari, Fereshteh ; Rabbani, Hossein ; Kafieh, Raheleh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c272t-db9b42c874cc86739587fa0ed77f9d90a2a552bdfda56cc36b58f1b42e1f66283</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adult</topic><topic>Artificial Intelligence</topic><topic>Female</topic><topic>Humans</topic><topic>Infrared Rays</topic><topic>Machine Learning</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Multiple Sclerosis - diagnosis</topic><topic>Multiple Sclerosis - diagnostic imaging</topic><topic>Multiple Sclerosis - pathology</topic><topic>Neural Networks, Computer</topic><topic>Ophthalmoscopy - methods</topic><topic>ROC Curve</topic><topic>Tomography, Optical Coherence - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Arian, Roya</creatorcontrib><creatorcontrib>Aghababaei, Ali</creatorcontrib><creatorcontrib>Soltanipour, Asieh</creatorcontrib><creatorcontrib>Khodabandeh, Zahra</creatorcontrib><creatorcontrib>Rakhshani, Sajed</creatorcontrib><creatorcontrib>Iyer, Shwasa B</creatorcontrib><creatorcontrib>Ashtari, Fereshteh</creatorcontrib><creatorcontrib>Rabbani, Hossein</creatorcontrib><creatorcontrib>Kafieh, Raheleh</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Translational vision science & technology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arian, Roya</au><au>Aghababaei, Ali</au><au>Soltanipour, Asieh</au><au>Khodabandeh, Zahra</au><au>Rakhshani, Sajed</au><au>Iyer, Shwasa B</au><au>Ashtari, Fereshteh</au><au>Rabbani, Hossein</au><au>Kafieh, Raheleh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images</atitle><jtitle>Translational vision science & technology</jtitle><addtitle>Transl Vis Sci Technol</addtitle><date>2024-07-01</date><risdate>2024</risdate><volume>13</volume><issue>7</issue><spage>13</spage><pages>13-</pages><issn>2164-2591</issn><eissn>2164-2591</eissn><abstract>Several machine learning studies have used optical coherence tomography (OCT) for multiple sclerosis (MS) classification with promising outcomes. Infrared reflectance scanning laser ophthalmoscopy (IR-SLO) captures high-resolution fundus images, commonly combined with OCT for fixed B-scan positions. However, no machine learning research has utilized IR-SLO images for automated MS diagnosis.
This study utilized a dataset comprised of IR-SLO images and OCT data from Isfahan, Iran, encompassing 32 MS and 70 healthy individuals. A number of convolutional neural networks (CNNs)-namely, VGG-16, VGG-19, ResNet-50, ResNet-101, and a custom architecture-were trained with both IR-SLO images and OCT thickness maps as two separate input datasets. The highest performing models for each modality were then integrated to create a bimodal model that receives the combination of OCT thickness maps and IR-SLO images. Subject-wise data splitting was employed to prevent data leakage among training, validation, and testing sets.
Overall, images of the 102 patients from the internal dataset were divided into test, validation, and training subsets. Subsequently, we employed a bootstrapping approach on the training data through iterative sampling with replacement. The performance of the proposed bimodal model was evaluated on the internal test dataset, demonstrating an accuracy of 92.40% ± 4.1% (95% confidence interval [CI], 83.61-98.08), sensitivity of 95.43% ± 5.75% (95% CI, 83.71-100.0), specificity of 92.82% ± 3.72% (95% CI, 81.15-96.77), area under the receiver operating characteristic (AUROC) curve of 96.99% ± 2.99% (95% CI, 86.11-99.78), and area under the precision-recall curve (AUPRC) of 97.27% ± 2.94% (95% CI, 86.83-99.83). Furthermore, to assess the model generalization ability, we examined its performance on an external test dataset following the same bootstrap methodology, achieving promising results, with accuracy of 85.43% ± 0.08% (95% CI, 71.43-100.0), sensitivity of 97.33% ± 0.06% (95% CI, 83.33-100.0), specificity of 84.6% ± 0.10% (95% CI, 71.43-100.0), AUROC curve of 99.67% ± 0.02% (95% CI, 95.63-100.0), and AUPRC of 99.65% ± 0.02% (95% CI, 94.90-100.0).
Incorporating both modalities improves the performance of automated diagnosis of MS, showcasing the potential of utilizing IR-SLO as a complementary tool alongside OCT.
Should the results of our proposed bimodal model be validated in future work with larger and more diverse datasets, diagnosis of MS based on both OCT and IR-SLO can be reliably integrated into routine clinical practice.</abstract><cop>United States</cop><pub>The Association for Research in Vision and Ophthalmology</pub><pmid>39017629</pmid><doi>10.1167/tvst.13.7.13</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adult Artificial Intelligence Female Humans Infrared Rays Machine Learning Male Middle Aged Multiple Sclerosis - diagnosis Multiple Sclerosis - diagnostic imaging Multiple Sclerosis - pathology Neural Networks, Computer Ophthalmoscopy - methods ROC Curve Tomography, Optical Coherence - methods |
title | SLO-Net: Enhancing Multiple Sclerosis Diagnosis Beyond Optical Coherence Tomography Using Infrared Reflectance Scanning Laser Ophthalmoscopy Images |
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